source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr3	1263202	ATC	A	INDEL	2bp_deletion	frameshift_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	3	B68,B89,C53
lof_cds	Chr3	1263206	A	ACC	INDEL	2bp_insertion	frameshift_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	3	B68,B89,C53
typical_cds_rare	Chr3	1263206	A	ACC	INDEL	2bp_insertion	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	3	B68,B89,C53
lof_cds	Chr3	1263230	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	51	A16,A18,A23,A25,A6,A8,B10,B101,B110,B117,B122,B131,B134,B21,B23,B24,B3,B33,B35,B4,B44,B47,B51,B58,B67,B76,B77,B8,B80,B90,B94,B99,C13,C28,C3,C30,C41,C42,C43,C45,C54,C60,C62,C68,C74,C81,C84,D2,D4,D8,D9
lof_cds	Chr3	1263235	ACT	A	INDEL	2bp_deletion	frameshift_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	50	A16,A18,A23,A25,A6,A8,B10,B101,B110,B117,B122,B131,B134,B21,B23,B24,B3,B33,B35,B4,B44,B47,B51,B58,B67,B77,B8,B80,B90,B94,B99,C13,C28,C3,C30,C41,C42,C43,C45,C54,C60,C62,C68,C74,C81,C84,D2,D4,D8,D9
typical_cds_rare	Chr3	1263284	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	1	B8
typical_cds_rare	Chr3	1263316	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	2	C64,C66
typical_cds_rare	Chr3	1263343	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	3	B123,C14,C4
typical_cds_rare	Chr3	1263354	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	3	B123,C14,C4
typical_cds_rare	Chr3	1263372	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	2	B78,D9
typical_cds_rare	Chr3	1263410	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	1	C60
typical_cds_rare	Chr3	1263418	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	4	B41,C10,C74,D1
typical_cds_rare	Chr3	1263467	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	5	A6,B131,B42,B43,B59
typical_cds_rare	Chr3	1263484	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	3	C21,C44,C56
lof_cds	Chr3	1263487	AGT	A	INDEL	2bp_deletion	frameshift_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	5	B121,C21,C31,C33,C44
typical_cds_rare	Chr3	1263487	AGT	A	INDEL	2bp_deletion	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	5	B121,C21,C31,C33,C44
typical_cds_rare	Chr3	1263489	TA	*	INDEL	1bp_deletion	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	5	B121,C21,C31,C33,C44
lof_cds	Chr3	1263490	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	5	B121,C21,C31,C33,C44
typical_cds_rare	Chr3	1263490	AC	A	INDEL	1bp_deletion	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	5	B121,C21,C31,C33,C44
typical_cds_rare	Chr3	1263519	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	1	C31
typical_cds_rare	Chr3	1263520	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	1	C68
typical_cds_rare	Chr3	1263541	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	3	C24,C56,C71
typical_cds_rare	Chr3	1263548	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	5	B85,C56,C63,C64,C71
typical_cds_rare	Chr3	1263615	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	4	B1,C32,C59,C68
typical_cds_rare	Chr3	1263682	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	4	B34,B39,C1,C13
lof_cds	Chr3	1263758	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	8	B106,B112,B49,B82,C14,C77,C87,C9
lof_cds	Chr3	1263762	T	TGA	INDEL	2bp_insertion	frameshift_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	1	A11
typical_cds_rare	Chr3	1263762	T	TGA	INDEL	2bp_insertion	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	1	A11
typical_cds_rare	Chr3	1263837	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	5	B4,B49,B81,B97,C9
typical_cds_rare	Chr3	1263864	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	3	B4,B64,C64
typical_cds_rare	Chr3	1263899	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	2	B28,C43
typical_cds_rare	Chr3	1263937	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	3	B80,C28,C53
typical_cds_rare	Chr3	1263941	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	2	A18,B90
typical_cds_rare	Chr3	1263956	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	1	C62
lof_cds	Chr3	1263964	ACC	A	INDEL	2bp_deletion	frameshift_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	1	C2
typical_cds_rare	Chr3	1263964	ACC	A	INDEL	2bp_deletion	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	1	C2
typical_cds_rare	Chr3	1263966	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	3	A19,B22,C48
lof_cds	Chr3	1263968	T	TAC	INDEL	2bp_insertion	frameshift_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	1	C2
typical_cds_rare	Chr3	1263968	T	TAC	INDEL	2bp_insertion	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	1	C2
typical_cds_rare	Chr3	1263977	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	1	C2
typical_cds_rare	Chr3	1263993	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	3	B63,B97,C28
typical_cds_rare	Chr3	1263994	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	1	B97
typical_cds_rare	Chr3	1264013	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	1	B24
typical_cds_rare	Chr3	1264014	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	1	C31
typical_cds_rare	Chr3	1264034	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	3	B29,B60,B91
typical_cds_rare	Chr3	1264044	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	4	B105,B13,B34,B64
typical_cds_rare	Chr3	1264050	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	5	A18,B1,B90,C27,C33
typical_cds_rare	Chr3	1264059	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	4	B120,B122,B26,B64
lof_cds	Chr3	1264074	ATT	A	INDEL	2bp_deletion	frameshift_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	9	B133,B3,B30,B67,B86,B95,B96,C12,C65
typical_cds_rare	Chr3	1264127	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	3	A24,B58,C43
typical_cds_rare	Chr3	1264130	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	5	B107,B122,B13,B132,C85
typical_cds_rare	Chr3	1264143	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	2	C13,C71
typical_cds_rare	Chr3	1264146	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	5	B77,C13,C30,C71,C76
typical_cds_rare	Chr3	1264148	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	5	B107,B122,B13,B132,C85
lof_cds	Chr3	1264155	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	3	B30,B67,C59
typical_cds_rare	Chr3	1264155	AC	A	INDEL	1bp_deletion	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	3	B30,B67,C59
typical_cds_rare	Chr3	1264160	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	5	B128,B77,C38,C61,C77
lof_cds	Chr3	1264199	C	CGA	INDEL	2bp_insertion	frameshift_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	3	C48,C58,D11
typical_cds_rare	Chr3	1264199	C	CGA	INDEL	2bp_insertion	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	3	C48,C58,D11
typical_cds_rare	Chr3	1264209	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	2	B25,C68
typical_cds_rare	Chr3	1264213	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	1	D11
typical_cds_rare	Chr3	1264224	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	1	B85
typical_cds_rare	Chr3	1264234	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	5	B22,B28,B4,B48,D7
lof_cds	Chr3	1264243	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	15	A13,A19,A4,B112,B119,B18,B36,B6,B81,B83,C61,C74,C77,C79,C9
typical_cds_rare	Chr3	1264256	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	3	C10,C23,C55
typical_cds_rare	Chr3	1264273	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	5	B127,B135,B44,B82,C48
lof_cds	Chr3	1264276	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	2	B30,B67
typical_cds_rare	Chr3	1264276	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	2	B30,B67
lof_cds	Chr3	1264290	A	ATC	INDEL	2bp_insertion	frameshift_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	2	A21,D9
typical_cds_rare	Chr3	1264290	A	ATC	INDEL	2bp_insertion	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	2	A21,D9
typical_cds_rare	Chr3	1264331	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	4	B7,C28,C66,C73
typical_cds_rare	Chr3	1264412	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	2	A9,C18
typical_cds_rare	Chr3	1264461	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	2	B78,D9
lof_cds	Chr3	1264499	C	CG	INDEL	1bp_insertion	frameshift_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	2	B128,B77
typical_cds_rare	Chr3	1264499	C	CG	INDEL	1bp_insertion	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	2	B128,B77
typical_cds_rare	Chr3	1264511	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	1	B104
typical_cds_rare	Chr3	1264529	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	1	C58
typical_cds_rare	Chr3	1264582	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	2	B19,D1
typical_cds_rare	Chr3	1264601	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	3	B10,B89,C31
typical_cds_rare	Chr3	1264648	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	1	B92
lof_cds	Chr3	1264672	C	CG	INDEL	1bp_insertion	frameshift_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	5	A5,B41,B62,B92,B96
typical_cds_rare	Chr3	1264672	C	CG	INDEL	1bp_insertion	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	5	A5,B41,B62,B92,B96
typical_cds_rare	Chr3	1264688	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	2	C41,C84
typical_cds_rare	Chr3	1264789	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	4	B137,B25,B87,C46
typical_cds_rare	Chr3	1264797	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	5	B104,B12,B24,B35,B55
typical_cds_rare	Chr3	1264802	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	4	C30,C5,C76,D9
typical_cds_rare	Chr3	1264833	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	2	B10,C33
typical_cds_rare	Chr3	1264842	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	2	B31,B82
lof_cds	Chr3	1264846	G	GC	INDEL	1bp_insertion	frameshift_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	6	B63,B83,C21,C28,C32,C68
lof_cds	Chr3	1264854	C	CAT	INDEL	2bp_insertion	frameshift_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	10	A24,B16,B22,B58,B60,C33,C4,C43,C72,C86
lof_cds	Chr3	1264864	TTC	T	INDEL	2bp_deletion	frameshift_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	1	D10
typical_cds_rare	Chr3	1264864	TTC	T	INDEL	2bp_deletion	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	1	D10
lof_cds	Chr3	1264867	TTA	T	INDEL	2bp_deletion	frameshift_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	1	B2
typical_cds_rare	Chr3	1264867	TTA	T	INDEL	2bp_deletion	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	1	B2
typical_cds_rare	Chr3	1264930	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	4	A6,B15,B63,B83
typical_cds_rare	Chr3	1264988	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	1	A6
typical_cds_rare	Chr3	1264997	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	2	A6,B32
typical_cds_rare	Chr3	1265038	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	4	B12,B24,B35,B55
lof_cds	Chr3	1265053	GAC	G	INDEL	2bp_deletion	frameshift_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	3	B66,C23,C42
typical_cds_rare	Chr3	1265053	GAC	G	INDEL	2bp_deletion	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	3	B66,C23,C42
lof_cds	Chr3	1265056	T	TGG	INDEL	2bp_insertion	frameshift_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	5	B41,B71,C10,C74,D1
typical_cds_rare	Chr3	1265056	T	TGG	INDEL	2bp_insertion	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	5	B41,B71,C10,C74,D1
lof_cds	Chr3	1265058	A	AT	INDEL	1bp_insertion	stop_gained,frameshift_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	6	B34,B38,B39,C13,C80,D6
lof_cds	Chr3	1265070	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	5	B41,B71,C10,C74,D1
typical_cds_rare	Chr3	1265070	A	AT	INDEL	1bp_insertion	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	5	B41,B71,C10,C74,D1
lof_cds	Chr3	1265117	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	3	A6,B55,C31
typical_cds_rare	Chr3	1265117	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	3	A6,B55,C31
typical_cds_rare	Chr3	1265128	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	2	B66,C42
typical_cds_rare	Chr3	1265144	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	3	B54,C1,C58
typical_cds_rare	Chr3	1265145	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	3	A21,B66,C42
typical_cds_rare	Chr3	1265153	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015747	SmilChr03G000114	131015747	rna-XM_057944169.1	3	B137,B75,C84