source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr3	1479125	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	2	B76,C27
typical_cds_rare	Chr3	1479125	A	AG	INDEL	1bp_insertion	CDS_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	2	B76,C27
typical_cds_rare	Chr3	1479143	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	2	A8,B45
lof_cds	Chr3	1479152	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	1	B6
typical_cds_rare	Chr3	1479152	TA	T	INDEL	1bp_deletion	CDS_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	1	B6
typical_cds_rare	Chr3	1479212	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	1	C2
typical_cds_rare	Chr3	1479236	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	2	A8,B37
lof_cds	Chr3	1479238	AGC	A	INDEL	2bp_deletion	frameshift_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	7	B125,B128,B131,B26,C20,C39,C6
lof_cds	Chr3	1479241	AAC	A	INDEL	2bp_deletion	frameshift_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	15	A16,A18,B109,B140,B22,B64,B84,C3,C33,C40,C41,C44,C50,C54,C59
lof_cds	Chr3	1479244	C	CTT	INDEL	2bp_insertion	frameshift_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	15	A16,A18,B109,B140,B22,B64,B84,C3,C33,C40,C41,C44,C50,C54,C59
typical_cds_rare	Chr3	1479246	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	1	C30
typical_cds_rare	Chr3	1479261	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	1	B131
typical_cds_rare	Chr3	1479262	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	4	B54,B9,C22,C26
typical_cds_rare	Chr3	1479268	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	2	B76,D8
typical_cds_rare	Chr3	1480703	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	3	B37,C17,C42
typical_cds_rare	Chr3	1482004	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	4	C11,C57,C69,C84
typical_cds_rare	Chr3	1482023	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	1	C2
typical_cds_rare	Chr3	1482058	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	1	A3
typical_cds_rare	Chr3	1482083	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	2	C57,C84
typical_cds_rare	Chr3	1482092	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	1	C30
lof_cds	Chr3	1482101	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	1	C15
typical_cds_rare	Chr3	1482101	TA	T	INDEL	1bp_deletion	CDS_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	1	C15
typical_cds_rare	Chr3	1485278	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	1	C2
lof_cds	Chr3	1485978	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	1	C43
typical_cds_rare	Chr3	1485978	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	1	C43
typical_cds_rare	Chr3	1485991	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	1	B80
typical_cds_rare	Chr3	1486008	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	3	B71,C62,C63
typical_cds_rare	Chr3	1486010	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	5	B108,B32,B73,C16,C87
typical_cds_rare	Chr3	1486049	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	1	B92
typical_cds_rare	Chr3	1486088	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	4	B129,C11,C2,C43
typical_cds_rare	Chr3	1486152	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	4	A3,B59,B93,C69
typical_cds_rare	Chr3	1486155	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1	2	A4,B59
lof_cds	Chr3	1486173	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1	2	A4,B59
typical_cds_rare	Chr3	1486173	A	AT	INDEL	1bp_insertion	CDS_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1	2	A4,B59
lof_cds	Chr3	1486174	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1	14	A3,A9,B108,B137,B32,B51,B59,C29,C3,C42,C43,C59,C69,C80
lof_cds	Chr3	1486199	T	TTA	INDEL	2bp_insertion	frameshift_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1	28	A1,A13,A21,A8,B10,B125,B126,B131,B15,B47,B56,B64,B65,B67,B69,B72,B79,B83,B96,C24,C35,C39,C44,C47,C49,C50,C70,C8
lof_cds	Chr3	1486200	TCA	T	INDEL	2bp_deletion	frameshift_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1	35	A13,A20,B105,B106,B108,B109,B118,B16,B30,B34,B38,B39,B48,B58,B6,B61,B72,B76,B80,C1,C13,C24,C26,C33,C35,C36,C37,C4,C42,C47,C56,C78,C81,C83,D6
lof_cds	Chr3	1486215	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1	50	A13,A18,A19,A21,A8,B10,B101,B103,B106,B125,B126,B131,B132,B135,B138,B15,B21,B23,B46,B47,B54,B56,B60,B64,B65,B67,B69,B72,B79,B80,B83,B96,B99,C24,C35,C39,C42,C44,C46,C47,C49,C50,C52,C60,C64,C70,C73,C8,C85,D2
lof_cds	Chr3	1486216	G	GGA	INDEL	2bp_insertion	frameshift_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1	49	A13,A18,A19,A21,A8,B10,B101,B103,B106,B125,B126,B131,B132,B135,B138,B15,B21,B23,B46,B47,B54,B56,B60,B64,B65,B67,B69,B72,B79,B80,B96,B99,C24,C35,C39,C42,C44,C46,C47,C49,C50,C52,C60,C64,C70,C73,C8,C85,D2
typical_cds_rare	Chr3	1486275	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	4	A5,B132,B19,B63
lof_cds	Chr3	1486285	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	1	B71
typical_cds_rare	Chr3	1486285	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	1	B71
typical_cds_rare	Chr3	1486301	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	1	C74
typical_cds_rare	Chr3	1486344	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	2	B59,C80
typical_cds_rare	Chr3	1486373	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	3	B46,C75,C80
lof_cds	Chr3	1486387	C	CGG	INDEL	2bp_insertion	frameshift_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	1	B53
typical_cds_rare	Chr3	1486387	C	CGG	INDEL	2bp_insertion	CDS_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	1	B53
typical_cds_rare	Chr3	1486435	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	1	C59
typical_cds_rare	Chr3	1486450	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	4	A21,B62,B87,C38
lof_cds	Chr3	1486454	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	3	A21,B53,D2
typical_cds_rare	Chr3	1486454	T	TG	INDEL	1bp_insertion	CDS_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	3	A21,B53,D2
lof_cds	Chr3	1486485	TTG	T	INDEL	2bp_deletion	frameshift_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	1	B41
typical_cds_rare	Chr3	1486485	TTG	T	INDEL	2bp_deletion	CDS_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	1	B41
typical_cds_rare	Chr3	1486495	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016886	SmilChr03G000135	131016886	rna-XM_057945674.1,rna-XM_057945675.1	2	D7,D8