source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr3	1547355	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	1	D10
typical_cds_rare	Chr3	1547355	CA	C	INDEL	1bp_deletion	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	1	D10
typical_cds_rare	Chr3	1547459	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	3	B28,B81,C1
typical_cds_rare	Chr3	1547483	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	4	B54,B9,C22,C26
typical_cds_rare	Chr3	1547514	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	3	B135,B34,B63
lof_cds	Chr3	1547516	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	3	B58,B81,C79
typical_cds_rare	Chr3	1547516	T	TC	INDEL	1bp_insertion	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	3	B58,B81,C79
typical_cds_rare	Chr3	1547558	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	1	A7
lof_cds	Chr3	1547570	CCA	C	INDEL	2bp_deletion	frameshift_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	1	B81
typical_cds_rare	Chr3	1547570	CCA	C	INDEL	2bp_deletion	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	1	B81
lof_cds	Chr3	1547580	CCA	C	INDEL	2bp_deletion	frameshift_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	36	A13,A3,A5,A7,A8,B10,B105,B106,B110,B113,B132,B140,B19,B21,B3,B35,B37,B39,B50,B56,B63,B69,B71,B72,C10,C25,C40,C41,C44,C50,C54,C59,C61,C82,C85,D6
lof_cds	Chr3	1547583	A	AGG	INDEL	2bp_insertion	frameshift_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	35	A13,A3,A5,A7,A8,B10,B105,B106,B110,B113,B132,B140,B19,B21,B3,B35,B37,B39,B50,B56,B63,B69,B71,B72,C10,C25,C41,C44,C50,C54,C59,C61,C82,C85,D6
typical_cds_rare	Chr3	1547602	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	2	B124,B81
typical_cds_rare	Chr3	1547732	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	1	D7
typical_cds_rare	Chr3	1547734	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	2	B10,C36
typical_cds_rare	Chr3	1547785	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	5	B120,B56,C10,C30,C82
typical_cds_rare	Chr3	1547791	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	1	C10
typical_cds_rare	Chr3	1547832	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	5	B102,B3,B32,C21,C29
typical_cds_rare	Chr3	1547859	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	1	B132
typical_cds_rare	Chr3	1547861	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	4	B131,B64,C41,C54
lof_cds	Chr3	1547999	TTC	T	INDEL	2bp_deletion	frameshift_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	1	C84
typical_cds_rare	Chr3	1547999	TTC	T	INDEL	2bp_deletion	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	1	C84
typical_cds_rare	Chr3	1548050	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	1	B2
typical_cds_rare	Chr3	1548098	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	3	B2,B81,C9
typical_cds_rare	Chr3	1548156	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	5	A24,B131,C3,C54,C57
typical_cds_rare	Chr3	1548160	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	5	A24,B131,C3,C54,C57
typical_cds_rare	Chr3	1548171	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	3	B7,B83,C30
typical_cds_rare	Chr3	1548193	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	4	A19,B64,C37,D8
typical_cds_rare	Chr3	1548206	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	5	A10,A19,B128,C80,D8
typical_cds_rare	Chr3	1548232	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	4	B10,B137,B41,C52
typical_cds_rare	Chr3	1548309	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	1	C54
typical_cds_rare	Chr3	1548345	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	4	A19,B73,C62,C70
typical_cds_rare	Chr3	1548417	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	1	B139
lof_cds	Chr3	1548456	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	1	B23
typical_cds_rare	Chr3	1548456	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	1	B23
typical_cds_rare	Chr3	1548540	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	4	B125,B64,B77,B80
typical_cds_rare	Chr3	1552254	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	1	B69
lof_cds	Chr3	1552262	GCC	G	INDEL	2bp_deletion	frameshift_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	2	B45,C72
typical_cds_rare	Chr3	1552262	GCC	G	INDEL	2bp_deletion	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	2	B45,C72
typical_cds_rare	Chr3	1552274	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	3	C11,C14,C61
typical_cds_rare	Chr3	1552286	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	1	B29
lof_cds	Chr3	1558355	TTA	T	INDEL	2bp_deletion	frameshift_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	3	A14,B11,C33
typical_cds_rare	Chr3	1558355	TTA	T	INDEL	2bp_deletion	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	3	A14,B11,C33
typical_cds_rare	Chr3	1573744	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	3	A16,A2,C30
typical_cds_rare	Chr3	1573750	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	1	C62
typical_cds_rare	Chr3	1573808	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	5	B1,B42,B89,C15,C71
typical_cds_rare	Chr3	1573810	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	4	B1,B89,C15,C71
typical_cds_rare	Chr3	1573816	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	1	C8
lof_cds	Chr3	1573831	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	6	B1,B126,B89,C15,C30,C71
lof_cds	Chr3	1574788	TGG	T	INDEL	2bp_deletion	frameshift_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	7	C17,C37,C4,C40,C54,C67,D9
typical_cds_rare	Chr3	1574833	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	3	B3,B78,C43
lof_cds	Chr3	1574857	TTG	T	INDEL	2bp_deletion	frameshift_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	2	C30,C46
typical_cds_rare	Chr3	1574857	TTG	T	INDEL	2bp_deletion	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	2	C30,C46
typical_cds_rare	Chr3	1574875	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	5	B105,B117,C84,C9,D7
typical_cds_rare	Chr3	1574921	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	2	C11,C69
typical_cds_rare	Chr3	1574932	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	4	B22,C11,C48,C69
typical_cds_rare	Chr3	1590476	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	5	A4,B120,C15,C21,C80
typical_cds_rare	Chr3	1591595	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	3	B35,C44,D2
typical_cds_rare	Chr3	1595389	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	1	B85
typical_cds_rare	Chr3	1595405	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	2	B138,C46
typical_cds_rare	Chr3	1595407	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	2	B17,C52
typical_cds_rare	Chr3	1595462	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	2	B71,C62
typical_cds_rare	Chr3	1595464	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	1	C2
typical_cds_rare	Chr3	1595501	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	1	B111
typical_cds_rare	Chr3	1595521	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	5	B111,B124,B71,C62,C7
typical_cds_rare	Chr3	1595528	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	2	C11,C87
typical_cds_rare	Chr3	1595550	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	2	B34,B83
typical_cds_rare	Chr3	1595587	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	1	A23
typical_cds_rare	Chr3	1595590	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	1	B126
typical_cds_rare	Chr3	1607980	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	3	B1,B17,B36
lof_cds	Chr3	1607984	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	69	A18,A19,A23,A24,A7,B10,B109,B111,B113,B115,B118,B123,B125,B127,B13,B134,B14,B140,B18,B24,B26,B27,B31,B34,B38,B47,B56,B58,B6,B63,B69,B72,B73,B78,B79,B82,B83,B9,B93,B96,B97,B99,C25,C27,C30,C4,C40,C41,C44,C49,C54,C56,C57,C58,C63,C64,C66,C67,C7,C70,C78,C79,C8,C82,C84,D3,D6,D8,D9
typical_cds_rare	Chr3	1607991	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	2	B45,B60
lof_cds	Chr3	1607999	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	2	A9,B27
typical_cds_rare	Chr3	1607999	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	2	A9,B27
lof_cds	Chr3	1608202	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	65	A11,A2,A5,A9,B1,B10,B100,B105,B107,B11,B110,B119,B124,B129,B13,B130,B136,B3,B31,B32,B33,B37,B38,B55,B60,B67,B69,B70,B73,B76,B78,B82,B85,B88,B9,B98,C11,C12,C20,C21,C22,C23,C28,C29,C31,C32,C37,C39,C4,C41,C5,C50,C53,C58,C65,C68,C69,C71,C75,C76,C83,C87,C9,D1,D3
typical_cds_rare	Chr3	1608270	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	2	B25,B66
typical_cds_rare	Chr3	1608291	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	4	B80,C3,C45,C80
typical_cds_rare	Chr3	1608293	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	2	B82,C75
typical_cds_rare	Chr3	1608318	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	1	B70
typical_cds_rare	Chr3	1608323	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	3	B70,C20,C75
typical_cds_rare	Chr3	1608335	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016791	SmilChr03G000142	131016791	rna-XM_057945522.1	2	B29,C41