source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr3	1828765	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	2	B122,C5
typical_cds_rare	Chr3	1828809	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	5	B81,B97,C31,C49,C57
typical_cds_rare	Chr3	1828811	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	2	C6,C64
lof_cds	Chr3	1828827	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	20	A14,A20,A5,B1,B103,B106,B127,B138,B37,B41,B48,B8,B87,C21,C32,C41,C7,C77,C78,D4
lof_cds	Chr3	1828830	GC	G	INDEL	1bp_deletion	frameshift_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	20	A14,A20,A5,B1,B103,B106,B127,B138,B37,B41,B48,B8,B87,C21,C32,C41,C7,C77,C78,D4
typical_cds_rare	Chr3	1828873	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	3	B111,B68,D2
typical_cds_rare	Chr3	1828887	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	2	A22,C27
typical_cds_rare	Chr3	1828906	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	2	A20,B103
typical_cds_rare	Chr3	1828910	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	1	C33
typical_cds_rare	Chr3	1829007	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	1	B122
typical_cds_rare	Chr3	1829069	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	4	B26,B65,B82,C83
typical_cds_rare	Chr3	1829093	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	1	B26
typical_cds_rare	Chr3	1829103	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	3	B67,C44,C8
typical_cds_rare	Chr3	1829131	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	1	B122
typical_cds_rare	Chr3	1829166	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	2	A7,C85
typical_cds_rare	Chr3	1829195	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	2	B120,B132
typical_cds_rare	Chr3	1829198	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	1	B120
typical_cds_rare	Chr3	1829200	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	1	B122
typical_cds_rare	Chr3	1829214	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	1	C37
lof_cds	Chr3	1829220	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	1	C85
typical_cds_rare	Chr3	1829220	T	TA	INDEL	1bp_insertion	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	1	C85
lof_cds	Chr3	1829221	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	1	C85
typical_cds_rare	Chr3	1829221	T	TG	INDEL	1bp_insertion	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	1	C85
typical_cds_rare	Chr3	1829235	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	4	A5,B120,B64,C37
typical_cds_rare	Chr3	1829237	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	2	B30,C35
typical_cds_rare	Chr3	1829243	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	1	B108
typical_cds_rare	Chr3	1829246	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	3	C64,C66,D6
typical_cds_rare	Chr3	1829251	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	2	B21,C10
typical_cds_rare	Chr3	1829254	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	2	B30,C35
lof_cds	Chr3	1829312	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	1	B98
typical_cds_rare	Chr3	1829312	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	1	B98
typical_cds_rare	Chr3	1829331	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	2	A9,B61
typical_cds_rare	Chr3	1829333	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	1	A20
typical_cds_rare	Chr3	1829335	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	2	B21,B22
typical_cds_rare	Chr3	1829342	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	5	A16,B26,B4,C28,C71
typical_cds_rare	Chr3	1829381	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	1	B64
typical_cds_rare	Chr3	1829389	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	5	A4,A7,B136,B73,C27
typical_cds_rare	Chr3	1829396	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	5	B73,B75,C27,C60,C69
typical_cds_rare	Chr3	1829412	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	4	B113,B126,B25,B4
typical_cds_rare	Chr3	1829498	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	1	B99
typical_cds_rare	Chr3	1829507	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	1	B104
typical_cds_rare	Chr3	1829522	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	1	B104
typical_cds_rare	Chr3	1829543	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	2	B40,C46
typical_cds_rare	Chr3	1829546	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	4	B40,B58,C46,C73
lof_cds	Chr3	1829590	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	1	D1
typical_cds_rare	Chr3	1829590	TC	T	INDEL	1bp_deletion	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	1	D1
typical_cds_rare	Chr3	1829595	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	2	C13,D6
lof_cds	Chr3	1829621	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	2	B39,C7
typical_cds_rare	Chr3	1829621	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	2	B39,C7
lof_cds	Chr3	1829659	C	CG	INDEL	1bp_insertion	frameshift_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	12	A1,B134,B19,B34,B38,C1,C13,C43,C50,C82,D10,D6
lof_cds	Chr3	1829661	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	12	A1,B134,B19,B34,B38,C1,C13,C43,C50,C82,D10,D6
lof_cds	Chr3	1829729	GAA	G	INDEL	2bp_deletion	frameshift_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	9	A2,B115,B133,B35,B49,B55,B74,C14,C31
lof_cds	Chr3	1829733	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	9	A2,B115,B133,B35,B49,B55,B74,C14,C31
lof_cds	Chr3	1829736	AAC	A	INDEL	2bp_deletion	frameshift_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	49	A10,A15,A25,A3,A4,A7,B102,B11,B110,B111,B121,B13,B130,B140,B15,B16,B18,B24,B26,B33,B39,B4,B40,B50,B53,B60,B73,B74,B77,B8,B80,B81,B9,B93,B99,C14,C17,C27,C29,C30,C39,C42,C46,C48,C5,C53,C59,C7,C75
typical_cds_rare	Chr3	1829775	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	2	B115,B49
lof_cds	Chr3	1829783	T	TCA	INDEL	2bp_insertion	frameshift_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	125	A10,A13,A15,A20,A22,A25,A3,A4,A7,B101,B102,B104,B11,B110,B111,B112,B113,B114,B119,B12,B121,B124,B128,B13,B130,B132,B134,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B24,B25,B26,B27,B29,B32,B33,B35,B36,B37,B39,B4,B40,B41,B45,B46,B50,B52,B53,B54,B59,B60,B61,B63,B64,B67,B69,B70,B73,B74,B77,B8,B80,B85,B86,B9,B90,B91,B93,B95,B97,B99,C11,C14,C15,C17,C22,C24,C25,C26,C27,C29,C30,C31,C32,C34,C38,C39,C41,C42,C45,C46,C47,C5,C53,C54,C59,C60,C61,C62,C68,C69,C7,C72,C74,C75,C76,C77,C78,C79,C82,C84,C85,D10,D2,D3,D7,D9
lof_cds	Chr3	1829784	TTG	T	INDEL	2bp_deletion	frameshift_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	124	A10,A13,A15,A20,A22,A25,A3,A4,A7,B101,B102,B104,B11,B110,B111,B112,B113,B114,B119,B12,B121,B124,B128,B13,B130,B134,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B24,B25,B26,B27,B29,B32,B33,B35,B36,B37,B39,B4,B40,B41,B45,B46,B50,B52,B53,B54,B59,B60,B61,B63,B64,B67,B69,B70,B73,B74,B77,B8,B80,B85,B86,B9,B90,B91,B93,B95,B97,B99,C11,C14,C15,C17,C22,C24,C25,C26,C27,C29,C30,C31,C32,C34,C38,C39,C41,C42,C45,C46,C47,C5,C53,C54,C59,C60,C61,C62,C68,C69,C7,C72,C74,C75,C76,C77,C78,C79,C82,C84,C85,D10,D2,D3,D7,D9
typical_cds_rare	Chr3	1829799	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	1	A8
typical_cds_rare	Chr3	1829817	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	2	B115,B49
typical_cds_rare	Chr3	1829831	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	1	D10
typical_cds_rare	Chr3	1829866	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	4	A2,B113,C24,C74
lof_cds	Chr3	1829868	ATG	A	INDEL	2bp_deletion	frameshift_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	29	A20,B111,B121,B124,B15,B16,B26,B29,B32,B36,B40,B45,B50,B53,B80,B90,C24,C25,C26,C27,C31,C39,C53,C62,C74,C82,D2,D7,D9
lof_cds	Chr3	1829935	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	4	B40,C24,C53,C74
typical_cds_rare	Chr3	1829935	TG	T	INDEL	1bp_deletion	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	4	B40,C24,C53,C74
lof_cds	Chr3	1829938	A	AC	INDEL	1bp_insertion	frameshift_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	3	B113,C24,C74
typical_cds_rare	Chr3	1829938	A	AC	INDEL	1bp_insertion	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	3	B113,C24,C74
lof_cds	Chr3	1829946	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	3	B40,C24,C53
typical_cds_rare	Chr3	1829946	T	TC	INDEL	1bp_insertion	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	3	B40,C24,C53
lof_cds	Chr3	1829947	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	3	B113,C24,C74
typical_cds_rare	Chr3	1829947	AT	A	INDEL	1bp_deletion	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	3	B113,C24,C74
typical_cds_rare	Chr3	1829949	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	3	B40,B58,C53
typical_cds_rare	Chr3	1829952	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	3	B40,C24,C53
lof_cds	Chr3	1829960	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	3	B113,C24,C74
typical_cds_rare	Chr3	1829960	C	CT	INDEL	1bp_insertion	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	3	B113,C24,C74
lof_cds	Chr3	1829961	A	ATT	INDEL	2bp_insertion	frameshift_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	3	B113,C24,C74
typical_cds_rare	Chr3	1829961	A	ATT	INDEL	2bp_insertion	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	3	B113,C24,C74
typical_cds_rare	Chr3	1829971	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	3	B113,C24,C74
typical_cds_rare	Chr3	1829972	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	3	B113,C24,C74
lof_cds	Chr3	1830028	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	1	B104
typical_cds_rare	Chr3	1830028	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	1	B104
lof_cds	Chr3	1830041	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	4	A8,B46,B7,D10
typical_cds_rare	Chr3	1830041	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	4	A8,B46,B7,D10
typical_cds_rare	Chr3	1830069	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	2	B21,B93
typical_cds_rare	Chr3	1830077	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	2	B21,B93
typical_cds_rare	Chr3	1830090	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	3	A10,B59,C42
typical_cds_rare	Chr3	1830116	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	1	C41
typical_cds_rare	Chr3	1830137	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	5	B104,B112,C30,C41,C87
typical_cds_rare	Chr3	1830170	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	3	B135,B23,C48
typical_cds_rare	Chr3	1830189	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	3	A14,B53,C41
typical_cds_rare	Chr3	1830191	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	3	A14,B53,C41
lof_cds	Chr3	1830192	GC	G	INDEL	1bp_deletion	frameshift_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	8	B122,B131,B133,B4,B63,B65,C49,C60
lof_cds	Chr3	1830197	CGG	C	INDEL	2bp_deletion	frameshift_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	7	B122,B131,B133,B63,B65,C49,C60
typical_cds_rare	Chr3	1830203	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	2	A1,A8
typical_cds_rare	Chr3	1830229	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	2	A1,A8
typical_cds_rare	Chr3	1830252	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	4	A1,A8,B70,C49
lof_cds	Chr3	1830261	T	TGA	INDEL	2bp_insertion	frameshift_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	2	A1,A8
typical_cds_rare	Chr3	1830261	T	TGA	INDEL	2bp_insertion	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	2	A1,A8
lof_cds	Chr3	1830418	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	5	A20,A6,C24,C78,C85
typical_cds_rare	Chr3	1830418	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	5	A20,A6,C24,C78,C85
typical_cds_rare	Chr3	1830443	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	1	B103
typical_cds_rare	Chr3	1830458	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	1	B103
typical_cds_rare	Chr3	1830482	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016855	SmilChr03G000167	131016855	rna-XM_057945636.1	4	B128,B13,C22,C82