source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr3	3889845	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	1	C65
typical_cds_rare	Chr3	3889891	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	1	B102
lof_cds	Chr3	3889912	G	GAA	INDEL	2bp_insertion	frameshift_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	60	A20,A21,B10,B100,B101,B106,B108,B111,B120,B121,B129,B132,B134,B137,B139,B16,B19,B28,B42,B43,B49,B51,B62,B66,B69,B70,B79,B82,B87,B89,B90,B92,B93,B97,C11,C15,C23,C25,C32,C38,C4,C50,C51,C52,C56,C61,C65,C68,C69,C7,C70,C72,C75,C77,C79,C82,C9,D2,D5,D9
typical_cds_rare	Chr3	3889924	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	4	A8,B135,C12,C65
typical_cds_rare	Chr3	3889925	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	1	B102
typical_cds_rare	Chr3	3889927	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	1	B102
lof_cds	Chr3	3889934	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	59	A20,A21,B10,B100,B101,B106,B108,B111,B120,B129,B132,B134,B137,B139,B16,B19,B27,B28,B42,B43,B49,B51,B62,B66,B69,B70,B79,B82,B87,B89,B90,B92,B93,B97,C11,C15,C23,C25,C32,C38,C4,C50,C51,C52,C56,C61,C65,C68,C69,C7,C70,C72,C75,C77,C79,C82,C9,D5,D9
typical_cds_rare	Chr3	3889937	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	1	B102
typical_cds_rare	Chr3	3889941	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	5	A24,B20,B42,C37,C78
typical_cds_rare	Chr3	3889965	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	1	B102
typical_cds_rare	Chr3	3889968	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	1	B102
typical_cds_rare	Chr3	3889969	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	2	B15,B72
typical_cds_rare	Chr3	3889986	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	1	C6
lof_cds	Chr3	3889992	TGG	T	INDEL	2bp_deletion	frameshift_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	1	B104
typical_cds_rare	Chr3	3889992	TGG	T	INDEL	2bp_deletion	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	1	B104
typical_cds_rare	Chr3	3889997	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	1	B75
typical_cds_rare	Chr3	3890015	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	5	B34,B8,B98,C33,C78
lof_cds	Chr3	3890064	TGA	T	INDEL	2bp_deletion	frameshift_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	6	B15,B49,B76,C19,C56,D6
lof_cds	Chr3	3890080	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	56	A20,B10,B100,B101,B106,B108,B111,B120,B121,B129,B132,B134,B137,B139,B16,B19,B27,B28,B42,B43,B51,B62,B66,B69,B70,B79,B82,B87,B89,B92,B93,B97,C11,C15,C23,C25,C32,C38,C50,C51,C52,C61,C65,C68,C69,C7,C70,C72,C75,C77,C79,C82,C9,D2,D5,D9
lof_cds	Chr3	3890123	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	1	B67
typical_cds_rare	Chr3	3890123	AT	A	INDEL	1bp_deletion	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	1	B67
typical_cds_rare	Chr3	3890155	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	3	A20,C78,C85
lof_cds	Chr3	3890166	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	6	B107,B131,C15,C39,C62,C66
typical_cds_rare	Chr3	3890182	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	4	B103,B13,B71,B81
lof_cds	Chr3	3890203	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	31	A6,B100,B122,B134,B15,B16,B20,B38,B49,B55,B6,B67,B70,B75,B76,B94,C13,C19,C29,C37,C38,C4,C46,C56,C61,C67,C79,C8,C83,D6,D7
lof_cds	Chr3	3890264	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	5	A8,B102,B135,C12,C65
typical_cds_rare	Chr3	3890264	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	5	A8,B102,B135,C12,C65
typical_cds_rare	Chr3	3890292	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	1	B67
lof_cds	Chr3	3890306	GC	G	INDEL	1bp_deletion	frameshift_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	2	B22,B59
typical_cds_rare	Chr3	3890306	GC	G	INDEL	1bp_deletion	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	2	B22,B59
lof_cds	Chr3	3890307	C	CCG	INDEL	2bp_insertion	frameshift_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	1	B17
typical_cds_rare	Chr3	3890307	C	CCG	INDEL	2bp_insertion	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	1	B17
typical_cds_rare	Chr3	3890319	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	1	B67
typical_cds_rare	Chr3	3890344	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	1	B131
typical_cds_rare	Chr3	3890362	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	2	C18,C2
typical_cds_rare	Chr3	3890443	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	2	A14,B8
lof_cds	Chr3	3890470	A	AAT	INDEL	2bp_insertion	stop_gained,frameshift_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	5	A9,B65,C18,C2,C69
typical_cds_rare	Chr3	3890470	A	AAT	INDEL	2bp_insertion	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	5	A9,B65,C18,C2,C69
lof_cds	Chr3	3890517	A	AAT	INDEL	2bp_insertion	frameshift_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945741.1	77	A20,A21,B100,B101,B102,B106,B108,B109,B111,B12,B120,B121,B129,B132,B133,B134,B137,B139,B16,B19,B27,B28,B3,B4,B42,B43,B48,B49,B51,B54,B56,B62,B66,B69,B71,B79,B82,B87,B89,B90,B92,B93,B95,B96,B97,C11,C12,C15,C22,C23,C25,C32,C38,C4,C45,C50,C51,C52,C56,C61,C65,C68,C69,C7,C70,C71,C72,C75,C77,C79,C82,C9,D2,D5,D6,D7,D9
typical_cds_rare	Chr3	3890675	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	3	B107,B122,C39
lof_cds	Chr3	3890699	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	79	A20,A21,B10,B101,B102,B106,B108,B109,B111,B12,B120,B121,B129,B132,B133,B134,B137,B139,B16,B19,B27,B28,B3,B4,B40,B42,B43,B49,B51,B54,B56,B62,B66,B69,B71,B79,B82,B89,B9,B90,B92,B93,B95,B96,B97,C11,C12,C15,C22,C23,C25,C26,C32,C38,C4,C42,C45,C50,C51,C52,C53,C56,C65,C68,C69,C7,C70,C71,C72,C75,C77,C79,C82,C9,D2,D5,D6,D7,D9
lof_cds	Chr3	3890762	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	1	B75
typical_cds_rare	Chr3	3890762	AC	A	INDEL	1bp_deletion	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	1	B75
typical_cds_rare	Chr3	3890791	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	1	C6
typical_cds_rare	Chr3	3890801	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	2	B75,D11
typical_cds_rare	Chr3	3890830	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	4	A14,B17,C54,D10
typical_cds_rare	Chr3	3890833	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	2	B74,D11
typical_cds_rare	Chr3	3890898	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	2	B22,B59
typical_cds_rare	Chr3	3890918	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	5	B3,B83,B97,C47,D2
typical_cds_rare	Chr3	3890925	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	3	B122,C4,C46
lof_cds	Chr3	3890931	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	23	A22,A4,A6,B114,B133,B135,B14,B140,B24,B36,B48,B69,B78,C1,C37,C38,C41,C44,C48,C61,C63,C64,C84
lof_cds	Chr3	3890944	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	27	A5,A9,B1,B103,B107,B113,B119,B126,B138,B21,B26,B32,B41,B53,B54,B59,B64,B65,B68,B9,C18,C22,C24,C49,C59,C6,C77
typical_cds_rare	Chr3	3890948	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	2	C33,D3
lof_cds	Chr3	3891015	GCT	G	INDEL	2bp_deletion	frameshift_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	46	A2,A20,A9,B100,B103,B107,B111,B113,B119,B121,B123,B135,B138,B2,B26,B27,B32,B41,B42,B43,B44,B5,B53,B79,B8,B83,B9,B93,B97,B98,C12,C13,C16,C22,C24,C26,C3,C30,C39,C47,C49,C53,C57,C59,C74,D11
lof_cds	Chr3	3891019	A	AAG	INDEL	2bp_insertion	frameshift_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	48	A2,A20,A9,B100,B103,B107,B111,B113,B119,B121,B123,B135,B138,B2,B20,B26,B27,B3,B32,B41,B42,B43,B44,B5,B53,B79,B8,B83,B9,B93,B97,B98,C12,C13,C16,C22,C24,C26,C3,C30,C39,C47,C49,C53,C57,C59,C74,D11
typical_cds_rare	Chr3	3891030	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	4	B111,B83,B97,C74
lof_cds	Chr3	3891063	CTT	C	INDEL	2bp_deletion	frameshift_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	42	A18,A19,A5,A9,B1,B107,B113,B119,B126,B128,B138,B139,B14,B21,B26,B29,B32,B4,B41,B5,B52,B53,B54,B64,B65,B68,B84,B95,B98,C11,C18,C2,C20,C28,C49,C54,C59,C60,C65,C69,C77,C79
lof_cds	Chr3	3891068	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	11	A22,B112,B126,B19,B24,B54,B86,C12,C19,C27,D4
lof_cds	Chr3	3891072	A	AGT	INDEL	2bp_insertion	frameshift_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	12	A20,A3,A6,B59,B63,B72,C24,C25,C78,C85,C87,C9
typical_cds_rare	Chr3	3891083	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	4	A14,B17,C54,C73
typical_cds_rare	Chr3	3891108	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	3	B114,C81,C84
lof_cds	Chr3	3891109	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	13	A13,A15,B119,B135,B52,B89,C21,C45,C47,C58,C63,C72,C80
typical_cds_rare	Chr3	3891120	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	2	B20,D11
lof_cds	Chr3	3891125	G	GTC	INDEL	2bp_insertion	frameshift_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	2	B20,D11
typical_cds_rare	Chr3	3891125	G	GTC	INDEL	2bp_insertion	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	2	B20,D11
lof_cds	Chr3	3891237	C	CAT	INDEL	2bp_insertion	frameshift_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	18	A13,B106,B130,B29,B30,B31,B36,B61,B72,B86,B87,B93,C11,C29,C36,C51,C65,C80
typical_cds_rare	Chr3	3891240	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	2	A22,C27
typical_cds_rare	Chr3	3891279	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	1	C6
typical_cds_rare	Chr3	3891315	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	1	B104
typical_cds_rare	Chr3	3891340	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	3	B10,C47,C77
typical_cds_rare	Chr3	3891348	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	5	B10,B27,B30,C47,C77
typical_cds_rare	Chr3	3891355	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	2	B27,B30
lof_cds	Chr3	3891365	CTT	C	INDEL	2bp_deletion	frameshift_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	4	B103,B71,B81,C57
typical_cds_rare	Chr3	3891365	CTT	C	INDEL	2bp_deletion	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	4	B103,B71,B81,C57
lof_cds	Chr3	3891442	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	1	C51
typical_cds_rare	Chr3	3891442	T	TG	INDEL	1bp_insertion	CDS_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	1	C51
lof_cds	Chr3	3891513	TGA	T	INDEL	2bp_deletion	frameshift_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	44	A13,A18,A19,B103,B106,B128,B139,B14,B26,B29,B34,B36,B4,B52,B63,B68,B71,B76,B8,B81,B84,B87,B93,B95,B98,C11,C20,C24,C28,C29,C31,C33,C36,C54,C57,C65,C69,C70,C78,C79,C8,C80,C84,C87
lof_cds	Chr3	3891541	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	19	B109,B12,B133,B137,B28,B4,B48,B54,B56,B71,B9,B95,B96,C22,C26,C45,C71,D5,D6
lof_cds	Chr3	3891544	AGG	A	INDEL	2bp_deletion	frameshift_variant	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	55	A18,A23,A8,A9,B102,B103,B107,B11,B111,B113,B119,B120,B135,B138,B139,B2,B20,B26,B27,B3,B30,B32,B41,B42,B43,B44,B5,B53,B59,B6,B64,B65,B79,B8,B83,B93,B97,B98,C12,C13,C16,C2,C24,C26,C39,C47,C49,C56,C57,C59,C74,C85,C86,D2,D7
lof_cds	Chr3	3891548	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131016933	SmilChr03G000344	131016933	rna-XM_057945740.1	93	A13,A14,A18,A19,A23,A8,A9,B102,B103,B106,B107,B11,B111,B113,B119,B120,B128,B135,B138,B139,B14,B2,B20,B26,B27,B29,B3,B30,B31,B32,B34,B36,B4,B41,B42,B43,B44,B5,B52,B53,B59,B6,B63,B64,B65,B68,B71,B72,B79,B8,B81,B83,B84,B86,B87,B93,B95,B97,B98,C11,C12,C13,C16,C2,C20,C24,C26,C28,C29,C33,C36,C39,C47,C49,C51,C54,C56,C57,C59,C65,C69,C70,C74,C78,C79,C8,C80,C84,C85,C86,C87,D2,D7