source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr3	4009153	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	65	A10,A18,A2,A20,A21,A22,A25,A4,A7,A8,B106,B110,B115,B117,B118,B120,B121,B124,B125,B129,B130,B136,B138,B14,B140,B15,B29,B30,B31,B37,B45,B46,B48,B50,B59,B72,B8,B80,B86,B87,B89,B9,B90,B92,C12,C17,C26,C29,C3,C33,C34,C35,C36,C42,C46,C51,C52,C58,C60,C7,C72,C76,C78,D10,D3
lof_cds	Chr3	4009155	G	GC	INDEL	1bp_insertion	frameshift_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	74	A10,A18,A2,A20,A21,A22,A25,A4,A7,A8,A9,B106,B110,B117,B118,B120,B124,B125,B130,B132,B134,B136,B138,B139,B14,B140,B15,B20,B29,B30,B31,B34,B37,B45,B46,B48,B50,B59,B61,B72,B73,B8,B80,B86,B87,B89,B9,B92,B99,C12,C17,C18,C2,C26,C29,C3,C34,C35,C36,C42,C45,C46,C51,C52,C54,C58,C60,C7,C72,C76,C78,C85,D10,D3
typical_cds_rare	Chr3	4009212	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	2	B107,B122
lof_cds	Chr3	4009376	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	3	B117,B31,B34
typical_cds_rare	Chr3	4009376	GT	G	INDEL	1bp_deletion	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	3	B117,B31,B34
typical_cds_rare	Chr3	4009453	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	1	B83
lof_cds	Chr3	4009526	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	7	A13,A15,B108,B109,B80,C36,C81
typical_cds_rare	Chr3	4009545	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	1	B83
typical_cds_rare	Chr3	4009570	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	2	B83,C10
typical_cds_rare	Chr3	4009574	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	2	B68,C10
typical_cds_rare	Chr3	4009668	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	1	C31
typical_cds_rare	Chr3	4009672	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	2	B62,C70
typical_cds_rare	Chr3	4009692	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	1	B101
typical_cds_rare	Chr3	4009708	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	2	C44,D5
typical_cds_rare	Chr3	4009716	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	2	B28,C10
typical_cds_rare	Chr3	4009830	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	2	B50,C75
typical_cds_rare	Chr3	4009980	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	3	B62,C27,C70
typical_cds_rare	Chr3	4010104	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	2	C44,D5
typical_cds_rare	Chr3	4010119	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	4	A3,B50,C48,C53
typical_cds_rare	Chr3	4010151	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	3	B62,C27,C70
typical_cds_rare	Chr3	4010169	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	5	B110,B125,B46,B89,C76
typical_cds_rare	Chr3	4010175	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	2	C30,C5
typical_cds_rare	Chr3	4010180	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	5	A5,B75,B88,C69,C77
typical_cds_rare	Chr3	4010195	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	5	B110,B125,B46,B89,C76
typical_cds_rare	Chr3	4010197	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	3	B114,B75,C84
typical_cds_rare	Chr3	4010201	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	4	A20,B7,C79,D3
typical_cds_rare	Chr3	4010210	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	2	B138,D7
typical_cds_rare	Chr3	4010229	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	1	D7
typical_cds_rare	Chr3	4010233	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	2	B53,B8
typical_cds_rare	Chr3	4010282	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	1	C47
typical_cds_rare	Chr3	4010315	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	1	C54
typical_cds_rare	Chr3	4010323	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	4	B135,B2,B78,C64
typical_cds_rare	Chr3	4010374	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	1	B102
typical_cds_rare	Chr3	4010414	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	1	B9
lof_cds	Chr3	4010436	TGA	T	INDEL	2bp_deletion	frameshift_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	95	A10,A15,A16,A20,A22,A25,A3,A4,A7,B102,B104,B11,B110,B111,B114,B115,B118,B119,B12,B120,B121,B125,B130,B132,B136,B14,B140,B15,B16,B18,B24,B25,B26,B29,B32,B33,B35,B37,B38,B39,B4,B40,B45,B50,B53,B54,B59,B60,B64,B67,B70,B73,B74,B75,B77,B8,B80,B81,B85,B86,B9,B90,B91,B92,B93,B99,C14,C15,C17,C24,C26,C27,C29,C3,C30,C34,C39,C41,C42,C46,C47,C48,C49,C5,C53,C57,C59,C7,C75,C76,C77,C78,C84,C85,D3
typical_cds_rare	Chr3	4010454	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	4	B39,C33,D3,D6
lof_cds	Chr3	4010463	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	89	A10,A15,A16,A22,A25,A3,A4,A7,B102,B104,B11,B110,B111,B114,B115,B118,B119,B12,B120,B121,B125,B130,B132,B136,B140,B15,B16,B18,B24,B25,B26,B29,B32,B33,B37,B38,B39,B4,B40,B45,B50,B53,B54,B59,B60,B64,B67,B73,B74,B75,B77,B8,B80,B81,B85,B9,B91,B92,B93,B99,C14,C15,C17,C24,C26,C27,C29,C3,C30,C34,C39,C41,C42,C46,C47,C48,C49,C5,C53,C57,C59,C7,C75,C76,C77,C78,C84,C85,D3
typical_cds_rare	Chr3	4010472	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	2	B49,B55
lof_cds	Chr3	4010504	CAA	C	INDEL	2bp_deletion	frameshift_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	26	A10,A4,A7,B102,B13,B130,B140,B15,B24,B39,B50,B53,B59,B60,B8,B80,B81,C17,C29,C46,C48,C53,C59,C7,C75,C76
typical_cds_rare	Chr3	4010583	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	1	B40
typical_cds_rare	Chr3	4010588	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	1	B101
typical_cds_rare	Chr3	4010591	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	4	A20,B55,C78,D11
typical_cds_rare	Chr3	4010615	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	1	B1
lof_cds	Chr3	4010618	ACC	A	INDEL	2bp_deletion	frameshift_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	60	A20,A5,A7,B103,B105,B107,B111,B112,B119,B124,B128,B13,B135,B138,B14,B16,B22,B23,B24,B26,B29,B32,B39,B41,B5,B51,B56,B58,B64,B68,B71,B77,B87,B9,B91,B93,B96,B98,C13,C18,C2,C21,C22,C24,C30,C33,C38,C39,C48,C49,C54,C57,C69,C73,C75,C76,C77,D1,D3,D6
lof_cds	Chr3	4010621	T	TGA	INDEL	2bp_insertion	frameshift_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	54	A20,A5,A7,B103,B105,B107,B112,B119,B124,B128,B13,B135,B138,B14,B16,B22,B23,B24,B26,B32,B39,B41,B5,B51,B56,B58,B64,B68,B71,B77,B87,B9,B91,B96,B98,C13,C18,C2,C21,C22,C24,C33,C38,C39,C48,C49,C54,C57,C69,C73,C77,D1,D3,D6
typical_cds_rare	Chr3	4010652	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	4	B102,B12,B4,D7
lof_cds	Chr3	4010675	T	TCC	INDEL	2bp_insertion	frameshift_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	27	A10,A3,B102,B13,B136,B15,B24,B38,B39,B40,B50,B53,B59,B60,B73,B77,B80,B81,B9,B93,C29,C30,C46,C48,C53,C59,C75
lof_cds	Chr3	4010676	ATT	A	INDEL	2bp_deletion	frameshift_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	27	A10,A3,B102,B13,B136,B15,B24,B38,B39,B40,B50,B53,B59,B60,B73,B77,B80,B81,B9,B93,C29,C30,C46,C48,C53,C59,C75
lof_cds	Chr3	4010765	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	35	A10,A25,A3,A4,A7,B130,B136,B16,B24,B25,B26,B39,B4,B40,B53,B54,B59,B60,B77,B80,B81,B9,B93,C15,C17,C29,C3,C30,C37,C46,C48,C5,C53,C59,C76
lof_cds	Chr3	4010770	ATT	A	INDEL	2bp_deletion	frameshift_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	40	A10,A25,A3,A4,A7,B130,B131,B136,B16,B24,B25,B26,B39,B4,B40,B49,B53,B54,B59,B60,B77,B80,B81,B9,B93,C15,C17,C29,C3,C30,C33,C37,C46,C48,C5,C53,C59,C68,C76,C8
lof_cds	Chr3	4010778	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	29	A10,A25,A3,A4,A7,B130,B16,B24,B26,B39,B4,B53,B54,B59,B60,B77,B81,B9,C15,C17,C29,C3,C30,C37,C46,C48,C5,C59,C76
typical_cds_rare	Chr3	4010787	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	4	B26,B4,C30,C5
typical_cds_rare	Chr3	4010864	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	2	B111,B24
typical_cds_rare	Chr3	4010871	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	1	A5
lof_cds	Chr3	4011067	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	4	A9,B131,C33,D3
typical_cds_rare	Chr3	4011067	C	CA	INDEL	1bp_insertion	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	4	A9,B131,C33,D3
lof_cds	Chr3	4011069	GC	G	INDEL	1bp_deletion	frameshift_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	4	A9,B131,C33,D3
typical_cds_rare	Chr3	4011069	GC	G	INDEL	1bp_deletion	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	4	A9,B131,C33,D3
typical_cds_rare	Chr3	4011137	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	4	B103,B37,B63,C81
typical_cds_rare	Chr3	4011157	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	5	B13,B24,B69,C5,D1
typical_cds_rare	Chr3	4011179	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	5	B126,C1,C12,C86,D4
typical_cds_rare	Chr3	4011185	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	4	B129,C10,C17,C20
lof_cds	Chr3	4011187	GAT	G	INDEL	2bp_deletion	frameshift_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	1	B69
typical_cds_rare	Chr3	4011187	GAT	G	INDEL	2bp_deletion	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	1	B69
typical_cds_rare	Chr3	4011220	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	2	B129,B85
lof_cds	Chr3	4011252	GAA	G	INDEL	2bp_deletion	frameshift_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	8	A25,A3,B111,B140,B77,B8,B9,C17
lof_cds	Chr3	4011363	A	AC	INDEL	1bp_insertion	frameshift_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	3	B16,B86,B92
typical_cds_rare	Chr3	4011363	A	AC	INDEL	1bp_insertion	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	3	B16,B86,B92
lof_cds	Chr3	4011373	GGT	G	INDEL	2bp_deletion	frameshift_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	3	B16,B86,B92
typical_cds_rare	Chr3	4011373	GGT	G	INDEL	2bp_deletion	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	3	B16,B86,B92
lof_cds	Chr3	4011378	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	3	B16,B86,B92
typical_cds_rare	Chr3	4011378	TC	T	INDEL	1bp_deletion	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	3	B16,B86,B92
typical_cds_rare	Chr3	4011379	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131016844	SmilChr03G000357	131016844	rna-XM_057945615.1	5	B82,C26,C33,C35,C9