source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr3	4088730	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	4	A13,B130,B73,C79
typical_cds_rare	Chr3	4088732	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	4	A10,B104,B48,D6
lof_cds	Chr3	4088746	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	43	A10,A13,A15,A16,A2,A9,B100,B104,B105,B118,B125,B130,B136,B139,B140,B2,B22,B23,B26,B32,B4,B48,B59,B73,B78,B83,B87,B90,B92,B94,C13,C27,C28,C35,C49,C59,C74,C75,C79,D10,D4,D6,D9
lof_cds	Chr3	4088772	ATC	A	INDEL	2bp_deletion	frameshift_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	24	A9,B100,B104,B106,B110,B118,B125,B139,B27,B32,B35,B4,B59,B78,B83,B87,B90,B92,B97,C35,C49,C59,C75,D9
typical_cds_rare	Chr3	4088792	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	1	B94
lof_cds	Chr3	4088805	G	GGT	INDEL	2bp_insertion	frameshift_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	3	B64,B85,C37
typical_cds_rare	Chr3	4088805	G	GGT	INDEL	2bp_insertion	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	3	B64,B85,C37
lof_cds	Chr3	4088807	CAA	C	INDEL	2bp_deletion	frameshift_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	3	B64,B85,C37
typical_cds_rare	Chr3	4088807	CAA	C	INDEL	2bp_deletion	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	3	B64,B85,C37
lof_cds	Chr3	4088887	G	GC	INDEL	1bp_insertion	frameshift_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	4	B103,B105,B22,B23
typical_cds_rare	Chr3	4088887	G	GC	INDEL	1bp_insertion	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	4	B103,B105,B22,B23
typical_cds_rare	Chr3	4088888	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	1	D6
typical_cds_rare	Chr3	4088892	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	1	D6
typical_cds_rare	Chr3	4088897	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	1	D6
lof_cds	Chr3	4088941	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	1	B122
typical_cds_rare	Chr3	4088941	A	AG	INDEL	1bp_insertion	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	1	B122
typical_cds_rare	Chr3	4088955	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	2	C13,C70
lof_cds	Chr3	4088968	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	1	A23
typical_cds_rare	Chr3	4088968	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	1	A23
typical_cds_rare	Chr3	4089071	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	2	B138,C71
lof_cds	Chr3	4089072	A	AC	INDEL	1bp_insertion	frameshift_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	4	B109,B37,B82,C77
typical_cds_rare	Chr3	4089072	A	AC	INDEL	1bp_insertion	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	4	B109,B37,B82,C77
lof_cds	Chr3	4089075	CT	C	INDEL	1bp_deletion	frameshift_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	29	A1,A6,B106,B115,B122,B138,B140,B18,B22,B27,B30,B32,B41,B44,B78,B81,B91,B96,C12,C13,C24,C27,C39,C50,C55,C62,C71,C76,D6
lof_cds	Chr3	4089082	C	CCG	INDEL	2bp_insertion	frameshift_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	12	B106,B138,B140,B22,B32,B78,C13,C27,C39,C55,C71,C76
lof_cds	Chr3	4089083	C	CGA	INDEL	2bp_insertion	frameshift_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	17	A1,A6,B115,B122,B18,B27,B30,B41,B44,B81,B91,B96,C12,C24,C50,C62,D6
typical_cds_rare	Chr3	4089192	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	1	D9
typical_cds_rare	Chr3	4089279	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	2	B111,B74
typical_cds_rare	Chr3	4089337	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	1	B41
typical_cds_rare	Chr3	4089464	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	2	D11,D5
typical_cds_rare	Chr3	4091505	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	2	A5,B53
typical_cds_rare	Chr3	4091546	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	4	A5,B53,C78,D7
typical_cds_rare	Chr3	4091570	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	1	A5
typical_cds_rare	Chr3	4091611	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	1	D8
typical_cds_rare	Chr3	4091614	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	4	B132,B3,B61,D7
lof_cds	Chr3	4091669	ATC	A	INDEL	2bp_deletion	frameshift_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	1	B10
typical_cds_rare	Chr3	4091669	ATC	A	INDEL	2bp_deletion	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	1	B10
typical_cds_rare	Chr3	4091713	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	1	D8
typical_cds_rare	Chr3	4091724	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	2	B52,B64
lof_cds	Chr3	4091793	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	1	C40
typical_cds_rare	Chr3	4091793	TA	T	INDEL	1bp_deletion	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	1	C40
lof_cds	Chr3	4091861	AGC	A	INDEL	2bp_deletion	frameshift_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	4	B136,B28,C52,C84
typical_cds_rare	Chr3	4091861	AGC	A	INDEL	2bp_deletion	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	4	B136,B28,C52,C84
typical_cds_rare	Chr3	4091881	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	1	C84
typical_cds_rare	Chr3	4091899	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	1	B101
typical_cds_rare	Chr3	4091919	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	5	B101,B13,B137,B21,B83
typical_cds_rare	Chr3	4091945	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	5	A23,B137,B34,B71,C42
typical_cds_rare	Chr3	4091953	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	1	C55
typical_cds_rare	Chr3	4091991	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	5	A22,B140,B2,C27,D6
lof_cds	Chr3	4091992	CT	C	INDEL	1bp_deletion	frameshift_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	11	A9,B118,B139,B35,B78,B87,B90,B92,C35,C75,D1
lof_cds	Chr3	4092005	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	3	A18,B12,B55
typical_cds_rare	Chr3	4092005	C	CA	INDEL	1bp_insertion	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	3	A18,B12,B55
typical_cds_rare	Chr3	4092008	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	4	B34,B75,B98,C60
typical_cds_rare	Chr3	4092064	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	4	B52,B64,C37,C54
lof_cds	Chr3	4092120	T	TTG	INDEL	2bp_insertion	frameshift_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	2	C38,D8
typical_cds_rare	Chr3	4092120	T	TTG	INDEL	2bp_insertion	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	2	C38,D8
lof_cds	Chr3	4092121	CCG	C	INDEL	2bp_deletion	frameshift_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	2	C38,D8
typical_cds_rare	Chr3	4092121	CCG	C	INDEL	2bp_deletion	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	2	C38,D8
typical_cds_rare	Chr3	4092126	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	2	C38,D8
typical_cds_rare	Chr3	4092129	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	1	D10
typical_cds_rare	Chr3	4092143	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	1	D10
lof_cds	Chr3	4092240	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	4	A13,B130,B73,C79
typical_cds_rare	Chr3	4092240	TC	T	INDEL	1bp_deletion	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	4	A13,B130,B73,C79
typical_cds_rare	Chr3	4092251	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	1	D10
typical_cds_rare	Chr3	4092375	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	1	B122
lof_cds	Chr3	4092389	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	1	D6
typical_cds_rare	Chr3	4092389	T	TG	INDEL	1bp_insertion	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	1	D6
typical_cds_rare	Chr3	4092445	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	4	B64,C37,C54,C8
lof_cds	Chr3	4092505	CG	C	INDEL	1bp_deletion	frameshift_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	1	C25
typical_cds_rare	Chr3	4092505	CG	C	INDEL	1bp_deletion	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	1	C25
lof_cds	Chr3	4092510	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	1	C25
typical_cds_rare	Chr3	4092510	A	AG	INDEL	1bp_insertion	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	1	C25
typical_cds_rare	Chr3	4092639	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018129	SmilChr03G000366	131018129	rna-XM_057946851.1	3	A13,B73,C79