source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr3	4440044	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	3	B107,B122,C60
lof_cds	Chr3	4440049	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	5	A24,A9,B55,C61,D7
typical_cds_rare	Chr3	4440049	TC	T	INDEL	1bp_deletion	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	5	A24,A9,B55,C61,D7
typical_cds_rare	Chr3	4440053	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	3	B122,B68,B75
typical_cds_rare	Chr3	4440059	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	1	C65
lof_cds	Chr3	4440092	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	6	B104,B108,B131,B18,C16,C81
typical_cds_rare	Chr3	4440104	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	3	B135,B2,C12
typical_cds_rare	Chr3	4440108	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	2	B109,C45
typical_cds_rare	Chr3	4440136	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	5	B65,C12,C30,C59,C71
lof_cds	Chr3	4440143	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	1	B131
typical_cds_rare	Chr3	4440143	CA	C	INDEL	1bp_deletion	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	1	B131
typical_cds_rare	Chr3	4440159	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	2	C1,C56
typical_cds_rare	Chr3	4440172	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	1	B59
typical_cds_rare	Chr3	4440188	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	3	B22,B23,C39
lof_cds	Chr3	4440190	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	2	A20,C85
typical_cds_rare	Chr3	4440190	T	TG	INDEL	1bp_insertion	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	2	A20,C85
lof_cds	Chr3	4440194	GC	G	INDEL	1bp_deletion	frameshift_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	2	A20,C85
typical_cds_rare	Chr3	4440194	GC	G	INDEL	1bp_deletion	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	2	A20,C85
lof_cds	Chr3	4440196	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	21	B105,B112,B127,B139,B15,B18,B5,B63,B65,B77,B95,C13,C20,C3,C39,C53,C6,C62,C70,C9,D3
typical_cds_rare	Chr3	4440225	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	5	B124,B28,B32,C49,C78
typical_cds_rare	Chr3	4440228	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	5	B30,B48,B61,C26,C42
typical_cds_rare	Chr3	4440233	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	1	B104
typical_cds_rare	Chr3	4440300	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	3	B20,C48,D3
typical_cds_rare	Chr3	4440304	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	1	C8
lof_cds	Chr3	4440362	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	4	B54,B9,C22,C26
typical_cds_rare	Chr3	4440362	TC	T	INDEL	1bp_deletion	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	4	B54,B9,C22,C26
typical_cds_rare	Chr3	4440377	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	1	B76
typical_cds_rare	Chr3	4440432	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	1	B107
typical_cds_rare	Chr3	4440455	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	2	A11,C58
typical_cds_rare	Chr3	4440459	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	2	B23,C48
lof_cds	Chr3	4440470	ATT	A	INDEL	2bp_deletion	frameshift_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	4	B1,C28,C32,C68
typical_cds_rare	Chr3	4440470	ATT	A	INDEL	2bp_deletion	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	4	B1,C28,C32,C68
lof_cds	Chr3	4440482	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	23	B114,B121,B16,B22,B56,B58,B60,B84,B96,B97,B98,C11,C16,C41,C51,C64,C65,C69,C78,C84,C86,D11,D2
typical_cds_rare	Chr3	4440494	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	2	B2,B9
typical_cds_rare	Chr3	4440524	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	2	B139,B69
typical_cds_rare	Chr3	4440528	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	1	C72
lof_cds	Chr3	4440550	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	4	A16,B18,B4,C39
typical_cds_rare	Chr3	4440550	AT	A	INDEL	1bp_deletion	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	4	A16,B18,B4,C39
typical_cds_rare	Chr3	4440554	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	4	B139,B69,C33,D3
typical_cds_rare	Chr3	4440555	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	1	B85
typical_cds_rare	Chr3	4440567	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	2	B129,C63
typical_cds_rare	Chr3	4440580	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	2	B102,B94
typical_cds_rare	Chr3	4440613	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	2	A11,B13
typical_cds_rare	Chr3	4440664	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	1	C8
lof_cds	Chr3	4440665	GAT	G	INDEL	2bp_deletion	frameshift_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	1	B59
typical_cds_rare	Chr3	4440665	GAT	G	INDEL	2bp_deletion	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	1	B59
typical_cds_rare	Chr3	4440671	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	1	B59
lof_cds	Chr3	4440679	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	4	B115,B89,B90,B92
typical_cds_rare	Chr3	4440679	AG	A	INDEL	1bp_deletion	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	4	B115,B89,B90,B92
lof_cds	Chr3	4440685	GAA	G	INDEL	2bp_deletion	frameshift_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	2	B62,D6
typical_cds_rare	Chr3	4440685	GAA	G	INDEL	2bp_deletion	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	2	B62,D6
lof_cds	Chr3	4440703	CT	C	INDEL	1bp_deletion	frameshift_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	1	B62
typical_cds_rare	Chr3	4440703	CT	C	INDEL	1bp_deletion	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	1	B62
lof_cds	Chr3	4440721	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	8	B100,B134,B16,B70,C15,C37,C79,D9
typical_cds_rare	Chr3	4440748	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	4	B104,B131,B20,C8
typical_cds_rare	Chr3	4440779	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	1	B75
lof_cds	Chr3	4440786	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	7	A10,B137,B27,B46,B74,B83,C46
typical_cds_rare	Chr3	4440796	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	3	B21,B41,C78
typical_cds_rare	Chr3	4440826	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	1	A11
typical_cds_rare	Chr3	4440839	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	5	A20,B106,B139,B87,C7
typical_cds_rare	Chr3	4440851	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	1	A15
typical_cds_rare	Chr3	4440857	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	1	C48
lof_cds	Chr3	4440888	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	4	B30,B31,B72,C26
typical_cds_rare	Chr3	4440888	TC	T	INDEL	1bp_deletion	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	4	B30,B31,B72,C26
typical_cds_rare	Chr3	4440905	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	1	C87
lof_cds	Chr3	4440920	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	3	B55,C31,D7
typical_cds_rare	Chr3	4440920	T	TA	INDEL	1bp_insertion	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	3	B55,C31,D7
typical_cds_rare	Chr3	4440934	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	2	A14,C40
typical_cds_rare	Chr3	4440944	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	1	C33
lof_cds	Chr3	4440953	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	1	B29
typical_cds_rare	Chr3	4440953	C	CA	INDEL	1bp_insertion	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	1	B29
typical_cds_rare	Chr3	4440954	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	4	B54,B55,C21,C87
lof_cds	Chr3	4440959	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	5	B33,B5,C46,C65,D11
typical_cds_rare	Chr3	4440959	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	5	B33,B5,C46,C65,D11
typical_cds_rare	Chr3	4441013	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	2	A14,B76
lof_cds	Chr3	4441057	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	29	A20,A3,A7,B105,B106,B111,B120,B130,B138,B15,B37,B40,B50,B68,B73,B8,B93,C11,C17,C27,C3,C41,C5,C69,C76,C77,D1,D10,D6
lof_cds	Chr3	4441061	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	2	B122,C65
typical_cds_rare	Chr3	4441061	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	2	B122,C65
typical_cds_rare	Chr3	4441082	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	2	B106,B86
lof_cds	Chr3	4441101	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	1	B122
typical_cds_rare	Chr3	4441101	AT	A	INDEL	1bp_deletion	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	1	B122
typical_cds_rare	Chr3	4441112	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	2	B122,C33
typical_cds_rare	Chr3	4441115	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	1	C55
typical_cds_rare	Chr3	4441135	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	3	A9,C31,D7
typical_cds_rare	Chr3	4441136	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	1	B135
typical_cds_rare	Chr3	4441155	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	4	B121,C11,C51,D2
typical_cds_rare	Chr3	4441163	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	1	C55
typical_cds_rare	Chr3	4441169	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	3	B22,C24,C85
typical_cds_rare	Chr3	4441173	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	2	B75,D6
typical_cds_rare	Chr3	4441179	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	3	B33,B78,C60
lof_cds	Chr3	4441180	CT	C	INDEL	1bp_deletion	frameshift_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	2	C38,C77
typical_cds_rare	Chr3	4441180	CT	C	INDEL	1bp_deletion	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	2	C38,C77
typical_cds_rare	Chr3	4441206	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	3	A23,C51,C78
lof_cds	Chr3	4441210	G	GTA	INDEL	2bp_insertion	frameshift_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	2	A24,C61
typical_cds_rare	Chr3	4441210	G	GTA	INDEL	2bp_insertion	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	2	A24,C61
lof_cds	Chr3	4441223	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	6	A24,B23,B85,C48,C61,C87
typical_cds_rare	Chr3	4441232	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	2	B107,B122
typical_cds_rare	Chr3	4441233	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	4	A10,B63,B83,C46
typical_cds_rare	Chr3	4441238	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	2	B23,C48
typical_cds_rare	Chr3	4441250	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	3	B57,C19,C46
typical_cds_rare	Chr3	4441257	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	3	B125,C18,C68
typical_cds_rare	Chr3	4441303	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	2	B75,C48
typical_cds_rare	Chr3	4441317	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	3	B100,B75,C70
lof_cds	Chr3	4441321	TTG	T	INDEL	2bp_deletion	frameshift_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	3	A18,B107,B35
typical_cds_rare	Chr3	4441321	TTG	T	INDEL	2bp_deletion	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	3	A18,B107,B35
typical_cds_rare	Chr3	4441333	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	1	B137
typical_cds_rare	Chr3	4441340	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018155	SmilChr03G000410	131018155	rna-XM_057946872.1	1	D11