source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr3	5048042	T	TAC	INDEL	2bp_insertion	frameshift_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	100	A11,A14,A15,A16,A18,A2,A20,A22,A23,A3,A5,A7,A9,B1,B10,B102,B103,B104,B108,B110,B113,B118,B12,B120,B132,B135,B138,B139,B14,B15,B21,B22,B27,B28,B33,B36,B37,B4,B43,B44,B45,B46,B47,B5,B53,B6,B60,B65,B67,B68,B75,B76,B79,B82,B83,B84,B94,B95,C10,C14,C17,C19,C20,C25,C27,C32,C33,C34,C36,C37,C39,C45,C48,C49,C51,C52,C53,C54,C56,C58,C60,C61,C62,C66,C67,C71,C72,C73,C74,C76,C77,C79,C80,C81,C86,C9,D1,D10,D2,D3
lof_cds	Chr3	5048060	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	16	A20,A21,A25,B115,B121,B22,B23,B41,B50,B53,B60,B75,B99,C29,C78,C85
lof_cds	Chr3	5048061	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	180	A11,A13,A14,A15,A16,A18,A2,A22,A23,A3,A5,A7,A9,B1,B10,B101,B102,B103,B104,B108,B109,B11,B110,B111,B112,B113,B117,B118,B119,B12,B120,B122,B125,B128,B129,B13,B130,B131,B132,B135,B136,B138,B139,B14,B15,B17,B18,B19,B2,B20,B21,B26,B27,B28,B29,B30,B31,B32,B33,B36,B37,B38,B4,B40,B43,B44,B45,B46,B47,B49,B5,B50,B52,B53,B55,B6,B60,B61,B62,B65,B66,B67,B68,B71,B72,B73,B74,B76,B77,B78,B79,B8,B81,B82,B83,B84,B87,B89,B9,B90,B91,B93,B94,B95,B96,B97,B98,C1,C10,C11,C14,C16,C17,C19,C20,C21,C23,C25,C27,C28,C3,C30,C31,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C44,C45,C48,C49,C5,C51,C52,C53,C54,C56,C58,C59,C6,C60,C61,C62,C63,C65,C66,C67,C68,C69,C7,C71,C72,C73,C74,C75,C76,C77,C79,C80,C81,C82,C83,C84,C86,C87,C9,D1,D10,D11,D2,D3,D5,D6,D7
lof_cds	Chr3	5048063	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	196	A1,A10,A11,A13,A14,A16,A18,A19,A2,A22,A23,A3,A4,A5,A7,A8,A9,B1,B10,B100,B101,B103,B104,B106,B107,B108,B11,B110,B111,B112,B113,B114,B117,B118,B119,B120,B122,B123,B124,B125,B126,B127,B128,B130,B131,B132,B134,B135,B137,B140,B15,B16,B18,B19,B2,B20,B22,B23,B24,B25,B27,B29,B30,B31,B32,B33,B34,B35,B37,B38,B39,B40,B44,B45,B46,B48,B49,B5,B50,B51,B53,B54,B55,B57,B58,B59,B6,B60,B62,B63,B64,B65,B67,B68,B69,B7,B70,B71,B73,B74,B76,B77,B79,B8,B80,B81,B82,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B94,B95,B97,B98,B99,C1,C10,C11,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C24,C25,C26,C3,C30,C31,C32,C33,C34,C35,C36,C37,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C54,C55,C57,C58,C59,C6,C60,C61,C63,C64,C66,C67,C68,C69,C71,C72,C76,C77,C79,C8,C81,C83,C84,C87,C9,D1,D11,D4,D5,D6,D8,D9
typical_cds_rare	Chr3	5048073	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	1	B30
typical_cds_rare	Chr3	5048150	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	1	B50
typical_cds_rare	Chr3	5048177	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	5	A5,B93,C13,C53,D10
typical_cds_rare	Chr3	5048214	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	3	B93,C53,D10
typical_cds_rare	Chr3	5048225	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	1	C16
lof_cds	Chr3	5048232	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	6	B104,C32,C55,C68,C70,D8
lof_cds	Chr3	5048295	T	TGA	INDEL	2bp_insertion	frameshift_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	5	B110,B23,C28,C31,D2
typical_cds_rare	Chr3	5048295	T	TGA	INDEL	2bp_insertion	CDS_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	5	B110,B23,C28,C31,D2
typical_cds_rare	Chr3	5048327	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	1	B14
typical_cds_rare	Chr3	5048352	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	4	B103,B105,B12,B68
typical_cds_rare	Chr3	5048359	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	4	B98,C41,C60,C81
typical_cds_rare	Chr3	5048382	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	2	B104,B123
lof_cds	Chr3	5048397	GGC	G	INDEL	2bp_deletion	frameshift_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	1	C41
typical_cds_rare	Chr3	5048397	GGC	G	INDEL	2bp_deletion	CDS_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	1	C41
typical_cds_rare	Chr3	5048407	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	5	A6,B129,B14,B28,C84
typical_cds_rare	Chr3	5048426	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	3	B115,B120,C77
typical_cds_rare	Chr3	5048500	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	2	B107,B65
typical_cds_rare	Chr3	5048501	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	5	A11,B140,B23,C6,D4
typical_cds_rare	Chr3	5048605	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	1	C8
typical_cds_rare	Chr3	5048652	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	1	B33
typical_cds_rare	Chr3	5048653	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	1	B118
typical_cds_rare	Chr3	5048712	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	4	B107,B67,C18,C46
typical_cds_rare	Chr3	5048758	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	2	B130,B69
typical_cds_rare	Chr3	5048810	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	1	B30
lof_cds	Chr3	5049643	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	1	C68
typical_cds_rare	Chr3	5049643	CA	C	INDEL	1bp_deletion	CDS_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	1	C68
lof_cds	Chr3	5049646	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	1	C68
typical_cds_rare	Chr3	5049646	TA	T	INDEL	1bp_deletion	CDS_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	1	C68
lof_cds	Chr3	5049716	T	TCG	INDEL	2bp_insertion	frameshift_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	6	B19,B6,B65,B66,C32,C68
lof_cds	Chr3	5049730	GAA	G	INDEL	2bp_deletion	frameshift_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	6	B19,B6,B65,B66,C32,C68
typical_cds_rare	Chr3	5049733	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	2	B102,C23
lof_cds	Chr3	5049734	T	TAC	INDEL	2bp_insertion	frameshift_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	6	B19,B6,B65,B66,C32,C68
lof_cds	Chr3	5049739	G	GTC	INDEL	2bp_insertion	frameshift_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	5	B6,B65,B66,C32,C68
typical_cds_rare	Chr3	5049739	G	GTC	INDEL	2bp_insertion	CDS_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	5	B6,B65,B66,C32,C68
typical_cds_rare	Chr3	5049752	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	5	B19,B65,B66,C32,C68
lof_cds	Chr3	5049789	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	38	A10,A19,A4,A5,B10,B100,B127,B131,B137,B15,B16,B25,B29,B32,B55,B59,B76,B84,C1,C14,C16,C24,C25,C35,C4,C40,C41,C42,C43,C49,C51,C55,C57,C60,C72,C79,C81,C84
lof_cds	Chr3	5049800	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	42	A24,A5,B103,B105,B109,B112,B127,B136,B138,B16,B17,B19,B34,B37,B42,B59,B61,B66,B67,B75,B82,B87,B88,B9,C13,C18,C20,C28,C29,C32,C4,C40,C50,C56,C62,C65,C68,C72,C80,C81,C87,C9
lof_cds	Chr3	5049807	T	TCC	INDEL	2bp_insertion	frameshift_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	34	A24,A5,B103,B105,B109,B112,B136,B138,B16,B17,B19,B37,B42,B59,B61,B67,B75,B87,B88,B9,C13,C20,C28,C29,C4,C40,C50,C56,C62,C65,C72,C80,C81,C9
lof_cds	Chr3	5049809	CAT	C	INDEL	2bp_deletion	frameshift_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	34	A24,A5,B103,B105,B109,B112,B136,B138,B16,B17,B19,B37,B42,B59,B61,B67,B75,B87,B88,B9,C13,C20,C28,C29,C4,C40,C50,C56,C62,C65,C72,C80,C81,C9
lof_cds	Chr3	5049891	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC131017146	SmilChr03G000475	131017146	rna-XM_057945886.1	81	A14,A20,A21,A24,A25,A6,B104,B106,B109,B112,B122,B128,B131,B134,B138,B14,B17,B18,B19,B22,B27,B31,B37,B41,B46,B5,B52,B56,B57,B60,B66,B67,B68,B7,B71,B72,B75,B77,B80,B85,B86,B88,B90,B93,B94,B95,B96,B99,C10,C13,C20,C22,C32,C33,C34,C36,C37,C39,C4,C45,C46,C47,C5,C50,C53,C54,C56,C66,C75,C77,C78,C8,C80,C83,C85,C87,D11,D2,D3,D5,D7