source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr3	5133390	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	8	A19,B11,B29,B32,B76,C1,C43,C49
typical_cds_rare	Chr3	5133523	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	1	B72
typical_cds_rare	Chr3	5133540	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	4	B134,B27,B4,C82
lof_cds	Chr3	5133548	GGT	G	INDEL	2bp_deletion	frameshift_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	56	A14,A20,A21,A7,A8,B1,B105,B109,B121,B125,B127,B128,B129,B132,B137,B20,B21,B22,B28,B41,B42,B49,B50,B53,B55,B56,B58,B69,B73,B75,B79,B8,B89,B94,C1,C10,C14,C25,C27,C32,C33,C39,C54,C56,C58,C59,C6,C63,C67,C7,C73,C76,C85,C86,C9,D3
lof_cds	Chr3	5133552	T	TGA	INDEL	2bp_insertion	frameshift_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	60	A14,A20,A21,A7,A8,B1,B105,B109,B110,B120,B121,B125,B127,B128,B129,B132,B137,B20,B21,B22,B28,B36,B41,B42,B49,B50,B53,B55,B56,B58,B69,B73,B75,B79,B8,B84,B89,B94,C1,C10,C14,C25,C27,C32,C33,C39,C54,C56,C58,C59,C6,C63,C67,C7,C73,C76,C85,C86,C9,D3
lof_cds	Chr3	5133565	ATC	A	INDEL	2bp_deletion	frameshift_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	1	C38
typical_cds_rare	Chr3	5133565	ATC	A	INDEL	2bp_deletion	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	1	C38
typical_cds_rare	Chr3	5133581	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	1	B131
typical_cds_rare	Chr3	5133592	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	5	B112,B30,B63,B93,C16
lof_cds	Chr3	5133596	CTT	C	INDEL	2bp_deletion	frameshift_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	82	A11,A14,A2,A20,A21,A7,A8,B1,B105,B117,B120,B121,B122,B125,B127,B128,B129,B13,B132,B136,B137,B138,B139,B140,B22,B26,B28,B30,B31,B36,B42,B46,B47,B49,B50,B52,B53,B55,B56,B58,B60,B64,B69,B73,B75,B79,B8,B80,B84,B89,B90,B94,C1,C10,C13,C14,C18,C19,C2,C21,C25,C33,C39,C48,C52,C54,C56,C58,C6,C60,C62,C67,C7,C71,C74,C76,C80,C85,C86,C9,D3,D4
lof_cds	Chr3	5133602	C	CAT	INDEL	2bp_insertion	frameshift_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	83	A11,A14,A2,A20,A21,A7,A8,B1,B105,B114,B117,B120,B121,B122,B125,B127,B128,B129,B13,B132,B136,B137,B138,B139,B140,B22,B26,B28,B30,B31,B36,B42,B46,B47,B49,B50,B52,B53,B55,B56,B58,B60,B64,B69,B73,B75,B79,B8,B80,B84,B89,B90,B94,C1,C10,C13,C14,C18,C19,C2,C21,C25,C33,C39,C48,C52,C54,C56,C58,C6,C60,C62,C67,C7,C71,C74,C76,C80,C85,C86,C9,D3,D4
typical_cds_rare	Chr3	5133627	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	1	A5
typical_cds_rare	Chr3	5133669	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	1	B130
typical_cds_rare	Chr3	5133678	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	3	B124,C77,D11
typical_cds_rare	Chr3	5133698	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	5	B112,B127,B77,C39,C83
typical_cds_rare	Chr3	5133702	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	2	C13,D11
typical_cds_rare	Chr3	5133711	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	3	B60,C68,D11
lof_cds	Chr3	5133719	TAA	T	INDEL	2bp_deletion	frameshift_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	27	A2,A25,B105,B117,B122,B128,B13,B132,B139,B15,B22,B3,B44,B47,B49,B53,B64,B66,B73,B8,C14,C36,C52,C60,C67,C80,C84
typical_cds_rare	Chr3	5133736	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	1	B105
typical_cds_rare	Chr3	5133832	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	3	B111,B50,B60
lof_cds	Chr3	5133862	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	1	C31
typical_cds_rare	Chr3	5133862	A	AG	INDEL	1bp_insertion	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	1	C31
lof_cds	Chr3	5133864	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	1	C31
typical_cds_rare	Chr3	5133864	AC	A	INDEL	1bp_deletion	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	1	C31
lof_cds	Chr3	5133869	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	10	B120,B131,B41,B53,B89,C30,C47,C57,C71,C77
typical_cds_rare	Chr3	5133892	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	3	B122,B55,C42
typical_cds_rare	Chr3	5133931	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	4	A20,B122,B40,B55
typical_cds_rare	Chr3	5133935	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	5	A20,B122,B40,B55,B83
typical_cds_rare	Chr3	5133950	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	4	A20,B122,B40,B55
typical_cds_rare	Chr3	5134029	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	2	B40,B55
typical_cds_rare	Chr3	5134035	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	2	B104,B118
lof_cds	Chr3	5134124	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	11	B29,B30,B34,B36,B51,B72,B8,B93,C29,C65,C69
lof_cds	Chr3	5134152	A	ACG	INDEL	2bp_insertion	frameshift_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	8	B114,B25,B98,C4,C41,C60,C81,C84
typical_cds_rare	Chr3	5134159	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	1	A5
typical_cds_rare	Chr3	5134169	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	1	B30
typical_cds_rare	Chr3	5134183	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	5	B13,B52,B73,C72,C86
typical_cds_rare	Chr3	5134233	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	4	A9,B93,C41,D5
typical_cds_rare	Chr3	5134287	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	5	A9,B121,C21,C34,C57
typical_cds_rare	Chr3	5134315	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	5	B121,B39,B73,C21,C6
typical_cds_rare	Chr3	5134390	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	2	B101,B4
lof_cds	Chr3	5134393	GGA	G	INDEL	2bp_deletion	frameshift_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	1	C46
typical_cds_rare	Chr3	5134393	GGA	G	INDEL	2bp_deletion	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	1	C46
typical_cds_rare	Chr3	5134396	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	1	B72
typical_cds_rare	Chr3	5134403	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	2	B65,C75
typical_cds_rare	Chr3	5134412	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	2	B101,B4
typical_cds_rare	Chr3	5134418	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	4	A1,B119,B58,C17
typical_cds_rare	Chr3	5134422	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	4	B100,B76,C15,C43
typical_cds_rare	Chr3	5134454	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	4	B110,B113,B125,B93
typical_cds_rare	Chr3	5134455	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	2	B113,B93
typical_cds_rare	Chr3	5134458	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	1	B104
typical_cds_rare	Chr3	5134470	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	1	B72
typical_cds_rare	Chr3	5134479	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	4	B93,C24,C56,D1
typical_cds_rare	Chr3	5134510	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	1	B125
typical_cds_rare	Chr3	5134512	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	1	C67
typical_cds_rare	Chr3	5134537	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	5	A3,B6,C48,C60,C67
typical_cds_rare	Chr3	5134553	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	3	B6,C48,C60
typical_cds_rare	Chr3	5134615	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	2	B113,B125
typical_cds_rare	Chr3	5134632	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	1	B113
typical_cds_rare	Chr3	5134651	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	1	C45
typical_cds_rare	Chr3	5134823	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	1	C24
typical_cds_rare	Chr3	5137173	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	2	B107,C58
typical_cds_rare	Chr3	5137176	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	2	C30,C8
typical_cds_rare	Chr3	5137181	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	2	B135,C62
typical_cds_rare	Chr3	5137337	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	1	C77
typical_cds_rare	Chr3	5137345	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	2	B44,B71
typical_cds_rare	Chr3	5137388	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	1	B126
lof_cds	Chr3	5137408	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	5	B126,B21,B22,B65,C20
typical_cds_rare	Chr3	5137408	TG	T	INDEL	1bp_deletion	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	5	B126,B21,B22,B65,C20
typical_cds_rare	Chr3	5137414	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	2	B111,B140
typical_cds_rare	Chr3	5137425	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	1	B111
typical_cds_rare	Chr3	5137461	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	3	B111,B140,C44
lof_cds	Chr3	5137470	TTC	T	INDEL	2bp_deletion	frameshift_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	9	A11,A19,B15,B28,B44,B64,B70,C32,C44
lof_cds	Chr3	5137474	C	CTG	INDEL	2bp_insertion	frameshift_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	8	A11,B15,B28,B44,B64,B70,C32,C44
typical_cds_rare	Chr3	5137496	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	4	B15,B44,B64,B70
lof_cds	Chr3	5137497	C	CTG	INDEL	2bp_insertion	frameshift_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	4	B15,B44,B64,B70
typical_cds_rare	Chr3	5137497	C	CTG	INDEL	2bp_insertion	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	4	B15,B44,B64,B70
typical_cds_rare	Chr3	5137563	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	1	B104
typical_cds_rare	Chr3	5137590	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	1	C76
typical_cds_rare	Chr3	5137695	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	2	B104,D9
lof_cds	Chr3	5137705	A	ATG	INDEL	2bp_insertion	frameshift_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	1	B104
typical_cds_rare	Chr3	5137705	A	ATG	INDEL	2bp_insertion	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	1	B104
lof_cds	Chr3	5137708	CAA	C	INDEL	2bp_deletion	frameshift_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	1	B104
typical_cds_rare	Chr3	5137708	CAA	C	INDEL	2bp_deletion	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	1	B104
typical_cds_rare	Chr3	5137737	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	1	B104
typical_cds_rare	Chr3	5137767	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017158	SmilChr03G000483	131017158	rna-XM_057945888.1,rna-XM_057945889.1	1	B134