source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr3	7440703	CT	C	INDEL	1bp_deletion	frameshift_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	36	A18,A21,B101,B106,B108,B12,B124,B128,B130,B135,B138,B14,B140,B18,B19,B21,B26,B4,B47,B59,B60,B90,C29,C35,C4,C44,C48,C54,C57,C6,C64,C78,C82,D6,D7,D8
lof_cds	Chr3	7440724	CAT	C	INDEL	2bp_deletion	frameshift_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	192	A1,A10,A13,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A5,A6,A7,A8,A9,B10,B100,B102,B105,B11,B110,B111,B112,B113,B114,B115,B117,B119,B120,B121,B122,B123,B124,B125,B128,B129,B13,B130,B131,B132,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B21,B22,B23,B25,B27,B28,B3,B30,B31,B32,B33,B35,B36,B37,B38,B4,B42,B43,B45,B47,B48,B49,B5,B51,B52,B53,B55,B59,B6,B60,B61,B64,B65,B66,B67,B69,B70,B71,B72,B73,B74,B75,B76,B78,B8,B81,B82,B83,B84,B85,B87,B88,B89,B9,B90,B92,B93,B94,B97,B99,C1,C10,C11,C12,C13,C14,C16,C17,C18,C20,C21,C24,C26,C27,C3,C30,C31,C32,C34,C35,C36,C37,C39,C4,C40,C41,C42,C43,C44,C46,C47,C48,C49,C5,C50,C51,C52,C54,C55,C57,C58,C59,C6,C60,C62,C63,C64,C65,C66,C67,C68,C69,C7,C71,C72,C73,C74,C75,C76,C77,C79,C8,C80,C81,C82,C83,C84,C85,C87,C9,D10,D4,D6,D7,D9
lof_cds	Chr3	7440727	T	TGC	INDEL	2bp_insertion	frameshift_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	187	A1,A10,A13,A16,A18,A19,A2,A20,A22,A23,A24,A5,A6,A7,A8,A9,B10,B100,B102,B105,B11,B110,B111,B112,B113,B114,B115,B117,B119,B120,B121,B122,B123,B124,B125,B128,B129,B13,B130,B131,B132,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B21,B22,B23,B25,B27,B28,B3,B30,B31,B32,B33,B35,B36,B37,B38,B4,B42,B43,B45,B47,B48,B49,B5,B51,B52,B53,B55,B59,B6,B60,B61,B64,B65,B67,B70,B71,B72,B73,B74,B75,B76,B78,B8,B81,B82,B83,B84,B85,B87,B88,B89,B9,B90,B92,B94,B97,B99,C1,C10,C11,C12,C13,C14,C16,C17,C18,C20,C21,C24,C26,C27,C3,C30,C31,C32,C34,C35,C36,C37,C39,C4,C40,C41,C42,C43,C44,C46,C47,C48,C49,C5,C50,C51,C52,C54,C55,C57,C58,C59,C6,C60,C62,C63,C64,C65,C66,C67,C68,C69,C7,C71,C72,C73,C74,C75,C76,C77,C79,C8,C80,C81,C82,C83,C84,C85,C87,C9,D10,D4,D6,D7,D9
typical_cds_rare	Chr3	7440745	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	1	B11
lof_cds	Chr3	7440802	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	75	A18,A2,A21,A24,A7,B10,B101,B104,B106,B108,B117,B122,B123,B126,B128,B129,B13,B130,B131,B135,B138,B14,B140,B18,B19,B2,B21,B23,B25,B26,B28,B32,B33,B4,B42,B43,B47,B5,B56,B59,B60,B78,B79,B85,B88,B92,B96,B97,C15,C20,C22,C28,C29,C31,C35,C36,C4,C43,C44,C48,C51,C54,C55,C57,C59,C6,C64,C66,C8,C82,C85,D11,D4,D6,D7
lof_cds	Chr3	7440830	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	22	A15,A18,B101,B11,B16,B31,B55,B61,B63,B82,B90,B99,C1,C15,C27,C36,C50,C52,C60,C72,C73,C79
lof_cds	Chr3	7440836	T	TTG	INDEL	2bp_insertion	frameshift_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	23	A15,A18,B101,B11,B16,B31,B55,B61,B63,B76,B82,B90,B99,C1,C15,C27,C36,C50,C52,C60,C72,C73,C79
lof_cds	Chr3	7440922	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	9	A11,A3,B124,B135,B49,B78,B79,C56,D10
typical_cds_rare	Chr3	7440941	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	1	C61
typical_cds_rare	Chr3	7441041	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	1	D11
lof_cds	Chr3	7441060	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	118	A1,A10,A13,A15,A16,A18,A19,A2,A20,A22,A25,A8,B10,B102,B104,B105,B109,B110,B111,B112,B113,B114,B118,B119,B120,B121,B122,B124,B130,B131,B134,B135,B137,B139,B14,B17,B19,B21,B22,B23,B26,B28,B29,B30,B31,B36,B37,B38,B42,B44,B45,B48,B49,B51,B53,B6,B61,B63,B65,B73,B75,B76,B79,B81,B82,B84,B88,B91,B92,B93,B94,B98,B99,C1,C10,C11,C13,C15,C16,C18,C24,C26,C27,C28,C3,C32,C36,C37,C38,C40,C46,C47,C48,C49,C5,C52,C54,C56,C58,C59,C64,C66,C67,C68,C69,C71,C72,C76,C77,C79,C8,C80,C81,C87,C9,D1,D3,D5
lof_cds	Chr3	7441098	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	46	A1,A23,A24,A9,B100,B101,B112,B118,B124,B129,B132,B15,B21,B27,B30,B36,B43,B44,B48,B55,B6,B61,B63,B65,B76,B82,B91,B94,C11,C12,C15,C17,C41,C47,C52,C57,C58,C64,C67,C68,C76,C78,C81,C87,D1,D3
lof_cds	Chr3	7441121	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	43	A15,A18,B105,B109,B119,B12,B124,B126,B136,B137,B45,B54,B55,B65,B67,B68,B7,B70,B80,B81,B82,B92,B93,B94,B95,B98,B99,C19,C24,C26,C28,C45,C5,C62,C64,C8,C82,C86,D1,D10,D3,D5,D8
lof_cds	Chr3	7441147	ACC	A	INDEL	2bp_deletion	frameshift_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	1	B14
typical_cds_rare	Chr3	7441147	ACC	A	INDEL	2bp_deletion	CDS_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	1	B14
typical_cds_rare	Chr3	7441160	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	1	C28
typical_cds_rare	Chr3	7441206	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	4	B65,C20,C6,D2
lof_cds	Chr3	7441214	TGA	T	INDEL	2bp_deletion	frameshift_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	52	A1,A19,A23,B100,B101,B109,B112,B118,B119,B124,B129,B132,B15,B2,B21,B27,B30,B36,B43,B44,B48,B55,B6,B61,B63,B76,B82,B91,B94,C11,C12,C15,C17,C3,C37,C41,C46,C47,C52,C57,C58,C64,C67,C68,C73,C76,C77,C78,C81,C87,D1,D3
typical_cds_rare	Chr3	7441315	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	3	B41,C10,C74
typical_cds_rare	Chr3	7441394	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	1	B1
lof_cds	Chr3	7441629	CG	C	INDEL	1bp_deletion	frameshift_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	99	A13,A15,A19,A20,A22,A23,A25,A5,A7,A8,B100,B105,B109,B11,B110,B111,B113,B114,B118,B124,B131,B132,B134,B135,B137,B15,B16,B17,B19,B2,B22,B26,B29,B3,B38,B43,B48,B49,B52,B53,B59,B61,B63,B64,B65,B73,B75,B77,B8,B81,B82,B85,B87,B90,B91,B99,C11,C12,C17,C18,C24,C26,C30,C32,C37,C39,C40,C41,C42,C43,C44,C46,C47,C5,C50,C51,C54,C56,C58,C59,C61,C63,C64,C67,C68,C69,C71,C74,C75,C76,C78,C79,C8,C81,C86,D1,D3,D5,D6
lof_cds	Chr3	7441633	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	99	A13,A15,A19,A20,A22,A23,A25,A5,A8,B100,B105,B109,B11,B110,B111,B113,B114,B118,B124,B131,B132,B134,B135,B137,B15,B16,B17,B19,B2,B22,B26,B29,B3,B38,B43,B48,B49,B52,B53,B59,B61,B63,B64,B65,B73,B75,B77,B8,B81,B82,B85,B87,B90,B91,B97,B99,C11,C12,C17,C18,C24,C26,C30,C32,C37,C39,C40,C41,C42,C43,C44,C46,C47,C5,C50,C51,C54,C56,C58,C59,C61,C63,C64,C67,C68,C69,C71,C74,C75,C76,C78,C79,C8,C81,C86,D1,D3,D5,D6
typical_cds_rare	Chr3	7441689	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	2	B101,C45
lof_cds	Chr3	7441704	G	GT	INDEL	1bp_insertion	frameshift_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	7	A22,B121,B137,B37,C40,C73,C9
lof_cds	Chr3	7441718	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	55	A1,A13,A15,A19,A21,B106,B121,B139,B14,B140,B17,B21,B24,B27,B29,B34,B38,B39,B4,B40,B46,B51,B61,B64,B66,B69,B72,B76,B8,B84,B86,B87,B89,B93,C11,C14,C16,C17,C20,C28,C29,C32,C33,C36,C43,C51,C53,C61,C65,C68,C69,C80,C84,C87,D3
lof_cds	Chr3	7441730	A	AC	INDEL	1bp_insertion	frameshift_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	97	A15,A19,A2,A20,A23,A25,A7,A8,B100,B106,B109,B11,B110,B111,B113,B117,B118,B123,B124,B126,B128,B131,B132,B135,B137,B14,B140,B15,B16,B17,B18,B19,B24,B25,B29,B3,B32,B36,B37,B38,B4,B41,B42,B43,B49,B5,B52,B53,B59,B61,B63,B65,B68,B75,B77,B81,B82,B85,B87,B88,B91,B99,C11,C12,C17,C24,C26,C29,C30,C31,C32,C37,C4,C43,C44,C46,C47,C48,C54,C56,C59,C6,C63,C64,C67,C68,C71,C76,C79,C8,C81,C85,C86,D1,D10,D3,D6
lof_cds	Chr3	7441731	T	TAC	INDEL	2bp_insertion	frameshift_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	95	A15,A19,A2,A20,A23,A25,A7,A8,B10,B100,B106,B109,B11,B110,B111,B117,B118,B123,B124,B126,B128,B131,B132,B135,B137,B14,B140,B15,B16,B17,B18,B19,B24,B25,B29,B3,B32,B36,B38,B4,B41,B43,B49,B5,B52,B53,B59,B61,B63,B65,B68,B75,B77,B81,B82,B85,B87,B88,B91,B99,C11,C12,C17,C24,C26,C29,C30,C31,C32,C37,C4,C43,C44,C46,C47,C48,C54,C56,C59,C6,C63,C64,C67,C68,C71,C76,C79,C8,C81,C85,C86,D1,D10,D3,D6
lof_cds	Chr3	7441756	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	2	B113,C6
typical_cds_rare	Chr3	7441756	TC	T	INDEL	1bp_deletion	CDS_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	2	B113,C6
lof_cds	Chr3	7441890	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	7	A24,B120,B58,B60,C52,C57,C74
lof_cds	Chr3	7441903	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	1	B10
typical_cds_rare	Chr3	7441903	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	1	B10
typical_cds_rare	Chr3	7441924	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	1	D11
typical_cds_rare	Chr3	7441932	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	1	D11
typical_cds_rare	Chr3	7441937	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	1	D11
typical_cds_rare	Chr3	7441964	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	1	B100
lof_cds	Chr3	7442082	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	7	B122,B126,B128,B60,B96,C43,C44
lof_cds	Chr3	7442084	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	7	B122,B126,B128,B60,B96,C43,C44
lof_cds	Chr3	7442087	A	ATG	INDEL	2bp_insertion	frameshift_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	9	B122,B126,B128,B21,B60,B96,C43,C44,C48
lof_cds	Chr3	7442102	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	12	A7,B122,B126,B128,B21,B60,B96,C43,C44,C48,C54,D6
lof_cds	Chr3	7442107	AAT	A	INDEL	2bp_deletion	frameshift_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	12	A7,B122,B126,B128,B21,B60,B96,C43,C44,C48,C54,D6
lof_cds	Chr3	7442166	GGA	G	INDEL	2bp_deletion	frameshift_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	16	A7,B126,B128,B21,B60,B85,B96,C15,C43,C44,C48,C51,C54,C82,D4,D6
typical_cds_rare	Chr3	7442186	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	1	B10
lof_cds	Chr3	7442201	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	1	B15
typical_cds_rare	Chr3	7442201	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018238	SmilChr03G000664	131018238	rna-XM_057946962.1	1	B15