source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr3	8857243	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1	16	B13,B130,B139,B15,B33,B43,B58,B63,B7,B78,B82,B91,C24,C31,C50,C52
lof_cds	Chr3	8857280	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1	1	C24
typical_cds_rare	Chr3	8857280	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1	1	C24
typical_cds_rare	Chr3	8857297	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1	3	A1,A14,C41
typical_cds_rare	Chr3	8857308	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1	1	C66
typical_cds_rare	Chr3	8857321	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1	1	C24
typical_cds_rare	Chr3	8857417	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1	1	B4
typical_cds_rare	Chr3	8857437	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1	1	B35
typical_cds_rare	Chr3	8857439	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1	1	C51
typical_cds_rare	Chr3	8857451	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1	1	B23
typical_cds_rare	Chr3	8857490	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1	2	B35,B75
typical_cds_rare	Chr3	8857522	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1	4	A11,A9,B50,B60
typical_cds_rare	Chr3	8857666	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	3	B40,B54,B86
typical_cds_rare	Chr3	8857787	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	2	A7,C11
typical_cds_rare	Chr3	8857806	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	5	A19,B105,B121,B17,C11
lof_cds	Chr3	8857808	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	3	B119,B123,C54
typical_cds_rare	Chr3	8857808	CA	C	INDEL	1bp_deletion	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	3	B119,B123,C54
typical_cds_rare	Chr3	8857888	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	4	A11,A9,B50,B60
typical_cds_rare	Chr3	8857897	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	1	B42
typical_cds_rare	Chr3	8857900	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	1	B42
typical_cds_rare	Chr3	8857904	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	1	B11
typical_cds_rare	Chr3	8857906	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	2	B132,C43
typical_cds_rare	Chr3	8857913	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	3	A21,B122,C29
typical_cds_rare	Chr3	8857915	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	1	B11
typical_cds_rare	Chr3	8857926	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	1	B11
typical_cds_rare	Chr3	8857927	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	4	A21,B122,B28,C29
typical_cds_rare	Chr3	8857930	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	4	A21,B122,C25,C29
typical_cds_rare	Chr3	8857950	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	1	B11
lof_cds	Chr3	8857993	C	CCA	INDEL	2bp_insertion	frameshift_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	8	A15,B132,B18,B34,B60,C29,C74,D9
lof_cds	Chr3	8857997	CTA	C	INDEL	2bp_deletion	frameshift_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	8	A15,B132,B18,B34,B60,C29,C74,D9
typical_cds_rare	Chr3	8858010	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	3	A15,B60,D9
typical_cds_rare	Chr3	8858013	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	4	A3,B42,C23,C29
lof_cds	Chr3	8858017	ATC	A	INDEL	2bp_deletion	frameshift_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	4	B132,B18,B34,C19
typical_cds_rare	Chr3	8858017	ATC	A	INDEL	2bp_deletion	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	4	B132,B18,B34,C19
lof_cds	Chr3	8858022	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	2	B9,C74
typical_cds_rare	Chr3	8858022	T	TG	INDEL	1bp_insertion	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	2	B9,C74
lof_cds	Chr3	8858024	T	TGG	INDEL	2bp_insertion	frameshift_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	5	B132,B18,B34,B73,C19
typical_cds_rare	Chr3	8858024	T	TGG	INDEL	2bp_insertion	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	5	B132,B18,B34,B73,C19
lof_cds	Chr3	8858027	T	TGG	INDEL	2bp_insertion	frameshift_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	4	B18,B34,B73,C19
typical_cds_rare	Chr3	8858027	T	TGG	INDEL	2bp_insertion	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	4	B18,B34,B73,C19
lof_cds	Chr3	8858028	CAT	C	INDEL	2bp_deletion	frameshift_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	4	B18,B34,B73,C19
typical_cds_rare	Chr3	8858028	CAT	C	INDEL	2bp_deletion	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	4	B18,B34,B73,C19
lof_cds	Chr3	8858032	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	2	B104,C31
typical_cds_rare	Chr3	8858032	C	CT	INDEL	1bp_insertion	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	2	B104,C31
typical_cds_rare	Chr3	8858059	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	1	B113
typical_cds_rare	Chr3	8858084	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	5	B54,B57,B9,C26,C4
typical_cds_rare	Chr3	8858103	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	3	B6,B95,C1
typical_cds_rare	Chr3	8858151	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	2	B95,C1
lof_cds	Chr3	8858158	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	4	B104,B16,C53,C9
typical_cds_rare	Chr3	8858158	TA	T	INDEL	1bp_deletion	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	4	B104,B16,C53,C9
typical_cds_rare	Chr3	8858164	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	4	B65,C20,C6,C75
typical_cds_rare	Chr3	8858180	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	4	B137,B70,C26,C87
typical_cds_rare	Chr3	8858192	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	4	B119,B123,C54,C69
typical_cds_rare	Chr3	8858219	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	4	B16,B35,B75,C31
typical_cds_rare	Chr3	8858225	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	4	B107,C35,C64,C83
lof_cds	Chr3	8858268	CAA	C	INDEL	2bp_deletion	frameshift_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	55	A16,A19,A20,A23,A4,A6,A8,B10,B103,B109,B110,B112,B129,B133,B14,B15,B23,B24,B28,B29,B32,B52,B55,B58,B59,B6,B63,B64,B76,B83,B84,B91,B95,C1,C12,C15,C16,C2,C24,C25,C37,C42,C43,C46,C49,C51,C52,C54,C55,C57,C71,C80,C84,D10,D3
typical_cds_rare	Chr3	8858391	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	2	C66,C81
typical_cds_rare	Chr3	8858430	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	4	B115,B65,C13,C63
lof_cds	Chr3	8858456	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	6	A21,B128,B16,B69,C36,D8
typical_cds_rare	Chr3	8858460	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	2	A21,B66
lof_cds	Chr3	8858475	C	CTG	INDEL	2bp_insertion	frameshift_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	2	B39,C26
typical_cds_rare	Chr3	8858475	C	CTG	INDEL	2bp_insertion	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	2	B39,C26
lof_cds	Chr3	8858476	C	CAG	INDEL	2bp_insertion	frameshift_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	36	A3,B102,B108,B114,B117,B125,B16,B22,B29,B3,B31,B38,B41,B46,B6,B77,B81,B84,B94,C13,C21,C23,C31,C34,C36,C37,C40,C5,C51,C7,C75,C79,C86,D1,D3,D8
lof_cds	Chr3	8858477	TCC	T	INDEL	2bp_deletion	frameshift_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	35	A3,B102,B108,B114,B117,B125,B16,B22,B29,B38,B39,B41,B46,B6,B77,B81,B84,B94,C13,C21,C23,C26,C31,C34,C36,C37,C40,C5,C51,C7,C75,C79,C86,D1,D8
typical_cds_rare	Chr3	8858533	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	4	B37,B57,C34,C5
typical_cds_rare	Chr3	8858553	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	5	B113,B126,B21,C19,C4
typical_cds_rare	Chr3	8858568	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	2	B106,C13
typical_cds_rare	Chr3	8858569	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	4	B28,B40,B54,B86
typical_cds_rare	Chr3	8858589	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	4	A19,B105,B121,B17
lof_cds	Chr3	8858601	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	62	A14,A2,A23,A8,A9,B101,B103,B104,B105,B108,B110,B112,B115,B117,B119,B121,B122,B124,B130,B132,B134,B19,B21,B24,B29,B4,B48,B50,B53,B55,B59,B61,B64,B68,B69,B70,B75,B78,B83,B88,C10,C18,C23,C27,C31,C32,C33,C43,C47,C53,C55,C61,C68,C69,C76,C79,C80,C83,C84,C9,D11,D4
typical_cds_rare	Chr3	8858649	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	1	B28
lof_cds	Chr3	8858663	A	ATT	INDEL	2bp_insertion	frameshift_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	2	B131,C8
typical_cds_rare	Chr3	8858663	A	ATT	INDEL	2bp_insertion	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	2	B131,C8
lof_cds	Chr3	8858754	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	19	A15,A25,B107,B120,B122,B125,B17,B21,B25,B4,B98,C14,C27,C28,C50,C51,C60,C73,D8
lof_cds	Chr3	8858768	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	1	B140
typical_cds_rare	Chr3	8858768	AC	A	INDEL	1bp_deletion	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	1	B140
lof_cds	Chr3	8858904	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	4	B4,B64,C4,C67
typical_cds_rare	Chr3	8858904	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	4	B4,B64,C4,C67
typical_cds_rare	Chr3	8858916	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	2	C4,C67
typical_cds_rare	Chr3	8858926	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	4	B26,B84,B96,C74
typical_cds_rare	Chr3	8858946	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	4	B36,B87,C13,C77
typical_cds_rare	Chr3	8858947	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	3	B61,C44,D8
typical_cds_rare	Chr3	8859078	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	3	B36,C13,C77
typical_cds_rare	Chr3	8859131	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	2	B131,C8
typical_cds_rare	Chr3	8859136	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	4	B138,B78,C57,C83
lof_cds	Chr3	8859188	CT	C	INDEL	1bp_deletion	frameshift_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	2	C64,C66
typical_cds_rare	Chr3	8859188	CT	C	INDEL	1bp_deletion	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	2	C64,C66
typical_cds_rare	Chr3	8859233	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	2	B104,D11
lof_cds	Chr3	8859370	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	1	D10
typical_cds_rare	Chr3	8859370	CA	C	INDEL	1bp_deletion	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	1	D10
typical_cds_rare	Chr3	8859373	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	1	D10
typical_cds_rare	Chr3	8859393	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017394	SmilChr03G000778	131017394	rna-XM_057946131.1,rna-XM_057946132.1	2	B77,B9