source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr3	9523470	TTC	T	INDEL	2bp_deletion	frameshift_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	5	A11,B107,B118,B85,C66
typical_cds_rare	Chr3	9523470	TTC	T	INDEL	2bp_deletion	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	5	A11,B107,B118,B85,C66
lof_cds	Chr3	9523474	T	TAA	INDEL	2bp_insertion	frameshift_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	5	A11,B107,B118,B85,C66
typical_cds_rare	Chr3	9523474	T	TAA	INDEL	2bp_insertion	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	5	A11,B107,B118,B85,C66
typical_cds_rare	Chr3	9523489	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	5	B10,B8,B97,C25,C42
typical_cds_rare	Chr3	9523532	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	1	B76
lof_cds	Chr3	9523537	TCC	T	INDEL	2bp_deletion	frameshift_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	27	A1,A14,A22,B115,B124,B14,B24,B27,B49,B50,B51,B54,B58,B60,B7,B74,B77,B79,B86,B9,C14,C17,C22,C26,C3,C34,C41
lof_cds	Chr3	9523585	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	23	A4,A8,B107,B121,B20,B31,B35,B40,B48,B53,B59,B65,B66,B72,B87,B93,B94,C26,C36,C38,C42,C77,D8
typical_cds_rare	Chr3	9523587	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	1	B86
typical_cds_rare	Chr3	9523609	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	1	A20
typical_cds_rare	Chr3	9523619	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	3	B41,C10,C74
typical_cds_rare	Chr3	9523632	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	2	B115,B23
typical_cds_rare	Chr3	9523640	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	2	A11,B42
lof_cds	Chr3	9523658	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	13	B109,B132,B20,B43,B55,B64,C2,C39,C45,C54,C60,C64,D11
lof_cds	Chr3	9523661	G	GAA	INDEL	2bp_insertion	frameshift_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	1	B138
typical_cds_rare	Chr3	9523661	G	GAA	INDEL	2bp_insertion	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	1	B138
typical_cds_rare	Chr3	9523676	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	1	A1
typical_cds_rare	Chr3	9523678	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	4	B106,B120,B6,C7
typical_cds_rare	Chr3	9523679	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	1	B34
lof_cds	Chr3	9523718	C	CCT	INDEL	2bp_insertion	frameshift_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	11	A22,B128,B139,B25,B63,B83,B98,C28,C32,C59,C68
lof_cds	Chr3	9523723	C	CG	INDEL	1bp_insertion	frameshift_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	11	A22,B128,B139,B25,B63,B83,B98,C28,C32,C59,C68
lof_cds	Chr3	9523728	CCA	C	INDEL	2bp_deletion	frameshift_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	11	A22,B128,B139,B25,B63,B83,B98,C28,C32,C59,C68
typical_cds_rare	Chr3	9523763	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	1	B10
typical_cds_rare	Chr3	9523784	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	2	A9,B59
typical_cds_rare	Chr3	9523794	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	3	B136,B87,C43
lof_cds	Chr3	9523799	CAT	C	INDEL	2bp_deletion	frameshift_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	2	C42,C80
typical_cds_rare	Chr3	9523799	CAT	C	INDEL	2bp_deletion	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	2	C42,C80
typical_cds_rare	Chr3	9523815	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	1	B104
typical_cds_rare	Chr3	9523828	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	2	B39,B87
typical_cds_rare	Chr3	9523856	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	5	A11,B106,B24,B99,D3
typical_cds_rare	Chr3	9523857	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	5	A11,B106,B24,B99,D3
lof_cds	Chr3	9523871	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	5	A23,B16,B82,C79,D6
typical_cds_rare	Chr3	9523871	AG	A	INDEL	1bp_deletion	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	5	A23,B16,B82,C79,D6
lof_cds	Chr3	9523873	CTA	C	INDEL	2bp_deletion	frameshift_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	29	A13,A16,A19,A20,B112,B117,B119,B12,B136,B18,B22,B24,B46,B61,B83,B88,B91,C15,C2,C24,C27,C40,C5,C52,C59,C74,C79,C87,D11
lof_cds	Chr3	9523883	A	AC	INDEL	1bp_insertion	frameshift_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	5	A23,B16,B82,C79,D6
typical_cds_rare	Chr3	9523883	A	AC	INDEL	1bp_insertion	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	5	A23,B16,B82,C79,D6
lof_cds	Chr3	9523885	T	TC	INDEL	1bp_insertion	stop_gained,frameshift_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	5	A23,B16,B82,C79,D6
typical_cds_rare	Chr3	9523885	T	TC	INDEL	1bp_insertion	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	5	A23,B16,B82,C79,D6
typical_cds_rare	Chr3	9523893	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	5	B10,B125,B45,C19,C76
typical_cds_rare	Chr3	9523902	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	2	B109,B26
typical_cds_rare	Chr3	9523910	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	3	B28,B65,B68
typical_cds_rare	Chr3	9523914	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	1	B85
lof_cds	Chr3	9523944	ACT	A	INDEL	2bp_deletion	frameshift_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	29	A11,A3,A6,A8,B1,B106,B123,B13,B27,B38,B40,B47,B55,B68,B73,B77,B82,C11,C14,C20,C43,C53,C55,C56,C6,C69,C71,C86,D11
lof_cds	Chr3	9523960	ATG	A	INDEL	2bp_deletion	frameshift_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	28	A18,A23,B102,B110,B117,B136,B29,B32,B45,B54,B56,B58,B63,B64,B9,B91,B97,C11,C16,C22,C26,C49,C5,C51,C54,C76,C85,D10
lof_cds	Chr3	9523964	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	30	A18,A23,B102,B111,B117,B136,B28,B29,B32,B45,B54,B56,B58,B63,B64,B65,B9,B91,B97,C11,C16,C22,C26,C49,C5,C51,C54,C76,C85,D10
lof_cds	Chr3	9523978	A	ATG	INDEL	2bp_insertion	frameshift_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	1	C44
typical_cds_rare	Chr3	9523978	A	ATG	INDEL	2bp_insertion	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	1	C44
typical_cds_rare	Chr3	9523986	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	3	B115,B23,C53
typical_cds_rare	Chr3	9523988	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	5	A7,B8,C31,C42,C45
typical_cds_rare	Chr3	9524013	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	5	A3,B19,B73,D1,D11
lof_cds	Chr3	9524023	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	14	A23,B111,B29,B45,B54,B58,C16,C22,C26,C49,C5,C51,C85,D10
lof_cds	Chr3	9524024	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	3	A10,C34,C83
typical_cds_rare	Chr3	9524024	T	TA	INDEL	1bp_insertion	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	3	A10,C34,C83
lof_cds	Chr3	9524027	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	14	A23,B111,B29,B45,B54,B58,C16,C22,C26,C49,C5,C51,C85,D10
typical_cds_rare	Chr3	9524037	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	2	B107,B122
lof_cds	Chr3	9524049	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	13	A15,A16,A6,B104,B16,B18,B26,B27,B31,B4,B74,C39,C87
typical_cds_rare	Chr3	9524067	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	1	C39
typical_cds_rare	Chr3	9524085	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	4	A1,B110,B34,B51
typical_cds_rare	Chr3	9524114	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	1	A3
typical_cds_rare	Chr3	9524159	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	2	B41,C10
lof_cds	Chr3	9524160	A	ATG	INDEL	2bp_insertion	frameshift_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	2	B67,C77
typical_cds_rare	Chr3	9524160	A	ATG	INDEL	2bp_insertion	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	2	B67,C77
typical_cds_rare	Chr3	9524163	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	3	B125,B67,C77
lof_cds	Chr3	9524166	TAC	T	INDEL	2bp_deletion	frameshift_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	2	B67,C77
typical_cds_rare	Chr3	9524166	TAC	T	INDEL	2bp_deletion	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	2	B67,C77
typical_cds_rare	Chr3	9524177	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	1	C72
typical_cds_rare	Chr3	9524201	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	1	B85
typical_cds_rare	Chr3	9524243	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	1	C72
lof_cds	Chr3	9524269	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	7	A25,B121,B130,B50,B73,C29,C46
typical_cds_rare	Chr3	9524331	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	1	B85
typical_cds_rare	Chr3	9524342	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	1	C25
typical_cds_rare	Chr3	9524363	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	5	B38,B39,C14,C7,C72
typical_cds_rare	Chr3	9524377	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	2	C64,C66
typical_cds_rare	Chr3	9524416	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	1	C25
typical_cds_rare	Chr3	9524432	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	1	B85
typical_cds_rare	Chr3	9524480	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	2	B20,B5
typical_cds_rare	Chr3	9524488	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018279	SmilChr03G000831	131018279	rna-XM_057947003.1	1	B104