source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr3	10576581	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	6	A2,B15,B3,B47,C53,C86
lof_cds	Chr3	10576582	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	28	A18,B101,B104,B125,B127,B129,B139,B17,B26,B34,B35,B5,B57,B59,B6,B66,B67,B87,B89,B90,B92,C10,C2,C21,C29,C46,C6,C8
typical_cds_rare	Chr3	10576606	ATC	*	INDEL	2bp_deletion	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	B74
typical_cds_rare	Chr3	10576722	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	B101
typical_cds_rare	Chr3	10576737	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	B101
lof_cds	Chr3	10576759	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	2	C40,D6
typical_cds_rare	Chr3	10576759	T	TC	INDEL	1bp_insertion	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	2	C40,D6
typical_cds_rare	Chr3	10576771	TAC	*	INDEL	2bp_deletion	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	D6
typical_cds_rare	Chr3	10576774	TGC	*	INDEL	2bp_deletion	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	D6
typical_cds_rare	Chr3	10576779	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	B101
lof_cds	Chr3	10576786	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	2	C40,D6
typical_cds_rare	Chr3	10576786	AC	A	INDEL	1bp_deletion	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	2	C40,D6
lof_cds	Chr3	10576819	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	2	C40,D6
typical_cds_rare	Chr3	10576819	T	TG	INDEL	1bp_insertion	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	2	C40,D6
typical_cds_rare	Chr3	10576832	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	B91
lof_cds	Chr3	10576883	GAC	G	INDEL	2bp_deletion	frameshift_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	8	B34,B39,B45,B91,C40,C44,C76,D6
lof_cds	Chr3	10576893	A	AGC	INDEL	2bp_insertion	stop_gained,frameshift_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	8	B34,B39,B45,B91,C40,C44,C76,D6
typical_cds_rare	Chr3	10576933	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	B131
lof_cds	Chr3	10576951	G	GAT	INDEL	2bp_insertion	frameshift_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	B131
typical_cds_rare	Chr3	10576951	G	GAT	INDEL	2bp_insertion	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	B131
lof_cds	Chr3	10576952	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	B101
typical_cds_rare	Chr3	10576952	TA	T	INDEL	1bp_deletion	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	B101
lof_cds	Chr3	10576958	A	AGC	INDEL	2bp_insertion	frameshift_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	B131
typical_cds_rare	Chr3	10576958	A	AGC	INDEL	2bp_insertion	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	B131
lof_cds	Chr3	10576959	TGA	T	INDEL	2bp_deletion	frameshift_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	B131
typical_cds_rare	Chr3	10576959	TGA	T	INDEL	2bp_deletion	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	B131
lof_cds	Chr3	10577006	GC	G	INDEL	1bp_deletion	frameshift_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	B123
typical_cds_rare	Chr3	10577006	GC	G	INDEL	1bp_deletion	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	B123
typical_cds_rare	Chr3	10577043	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	3	B125,C40,D6
typical_cds_rare	Chr3	10577052	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	4	B125,B91,C40,D6
typical_cds_rare	Chr3	10577099	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	3	B91,C27,D6
typical_cds_rare	Chr3	10577137	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	2	B124,B27
typical_cds_rare	Chr3	10577141	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	4	B129,B83,C43,C63
typical_cds_rare	Chr3	10577143	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	D4
lof_cds	Chr3	10577177	CG	C	INDEL	1bp_deletion	frameshift_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	8	B129,B20,B77,B83,C43,C63,C7,C79
lof_cds	Chr3	10577181	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	8	B129,B20,B77,B83,C43,C63,C7,C79
typical_cds_rare	Chr3	10577199	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	3	B34,B38,C27
typical_cds_rare	Chr3	10577206	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	3	B124,B20,C7
typical_cds_rare	Chr3	10577214	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	B73
typical_cds_rare	Chr3	10577225	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	2	B101,B121
typical_cds_rare	Chr3	10577250	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	2	B34,B38
lof_cds	Chr3	10577603	ACC	A	INDEL	2bp_deletion	frameshift_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	C49
typical_cds_rare	Chr3	10577603	ACC	A	INDEL	2bp_deletion	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	C49
lof_cds	Chr3	10577607	G	GGA	INDEL	2bp_insertion	frameshift_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	C49
typical_cds_rare	Chr3	10577607	G	GGA	INDEL	2bp_insertion	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	C49
lof_cds	Chr3	10577617	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	C49
typical_cds_rare	Chr3	10577617	AC	A	INDEL	1bp_deletion	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	C49
typical_cds_rare	Chr3	10577692	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	2	B40,C60
typical_cds_rare	Chr3	10577709	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	B114
typical_cds_rare	Chr3	10577714	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	4	B16,B34,B99,C15
lof_cds	Chr3	10577744	A	AC	INDEL	1bp_insertion	frameshift_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	12	A23,B122,B136,B140,B20,B25,B6,B72,B78,B9,C41,C56
typical_cds_rare	Chr3	10577763	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	3	B117,B72,C79
typical_cds_rare	Chr3	10577777	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	4	B104,B22,C42,C6
typical_cds_rare	Chr3	10577815	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	5	B114,B123,B131,B47,D4
lof_cds	Chr3	10577829	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	5	A11,A7,B115,C9,D3
typical_cds_rare	Chr3	10577829	CA	C	INDEL	1bp_deletion	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	5	A11,A7,B115,C9,D3
typical_cds_rare	Chr3	10577834	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	B57
typical_cds_rare	Chr3	10577867	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	4	B123,B125,C39,C44
typical_cds_rare	Chr3	10577915	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	2	A7,D3
typical_cds_rare	Chr3	10577918	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	2	B46,B70
lof_cds	Chr3	10577925	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	B8
typical_cds_rare	Chr3	10577925	TG	T	INDEL	1bp_deletion	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	B8
typical_cds_rare	Chr3	10577941	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	2	C23,C36
typical_cds_rare	Chr3	10577970	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	2	B129,C39
typical_cds_rare	Chr3	10577978	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	3	B61,C35,C64
typical_cds_rare	Chr3	10577995	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	B16
lof_cds	Chr3	10578001	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	12	B11,B30,B43,B46,B55,B67,B73,C27,C61,C72,C83,C84
typical_cds_rare	Chr3	10578006	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	2	C2,C42
typical_cds_rare	Chr3	10578008	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	B67
typical_cds_rare	Chr3	10578016	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	B16
typical_cds_rare	Chr3	10578023	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	5	B66,B67,C28,C35,C60
typical_cds_rare	Chr3	10578030	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	4	B16,B30,C42,C60
typical_cds_rare	Chr3	10578032	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	4	B16,C21,C5,C64
lof_cds	Chr3	10578036	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	C5
typical_cds_rare	Chr3	10578036	CA	C	INDEL	1bp_deletion	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	C5
typical_cds_rare	Chr3	10578099	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	C60
typical_cds_rare	Chr3	10578231	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	D11
typical_cds_rare	Chr3	10578235	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	B101
lof_cds	Chr3	10578306	A	AAG	INDEL	2bp_insertion	frameshift_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	2	C10,C74
typical_cds_rare	Chr3	10578306	A	AAG	INDEL	2bp_insertion	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	2	C10,C74
lof_cds	Chr3	10578308	ACT	A	INDEL	2bp_deletion	frameshift_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	2	C10,C74
typical_cds_rare	Chr3	10578308	ACT	A	INDEL	2bp_deletion	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	2	C10,C74
typical_cds_rare	Chr3	10578452	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	D11
typical_cds_rare	Chr3	10578518	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	5	B34,B87,C10,C21,C29
typical_cds_rare	Chr3	10578665	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	B75
typical_cds_rare	Chr3	10578666	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	B75
typical_cds_rare	Chr3	10578676	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	B75
typical_cds_rare	Chr3	10578717	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	C57
typical_cds_rare	Chr3	10578721	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	B22
typical_cds_rare	Chr3	10578776	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	2	B120,D10
typical_cds_rare	Chr3	10578817	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	C13
typical_cds_rare	Chr3	10578838	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	2	B19,C32
typical_cds_rare	Chr3	10578840	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	B22
typical_cds_rare	Chr3	10579037	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	5	B139,B87,C16,C30,D4
lof_cds	Chr3	10579077	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	C46
typical_cds_rare	Chr3	10579077	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	C46
lof_cds	Chr3	10579094	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	4	B67,B87,B96,C46
typical_cds_rare	Chr3	10579094	CA	C	INDEL	1bp_deletion	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	4	B67,B87,B96,C46
lof_cds	Chr3	10579099	T	TTA	INDEL	2bp_insertion	stop_gained,frameshift_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	3	B67,B87,B96
typical_cds_rare	Chr3	10579099	T	TTA	INDEL	2bp_insertion	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	3	B67,B87,B96
lof_cds	Chr3	10579107	TAA	T	INDEL	2bp_deletion	frameshift_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	B87
typical_cds_rare	Chr3	10579107	TAA	T	INDEL	2bp_deletion	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	B87
lof_cds	Chr3	10579109	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	3	B67,B96,C46
typical_cds_rare	Chr3	10579109	AC	A	INDEL	1bp_deletion	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	3	B67,B96,C46
lof_cds	Chr3	10579114	TTG	T	INDEL	2bp_deletion	frameshift_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	3	B67,B96,C46
typical_cds_rare	Chr3	10579114	TTG	T	INDEL	2bp_deletion	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	3	B67,B96,C46
lof_cds	Chr3	10579119	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	B87
typical_cds_rare	Chr3	10579119	TC	T	INDEL	1bp_deletion	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	B87
typical_cds_rare	Chr3	10579123	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	B96
typical_cds_rare	Chr3	10579139	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	B96
lof_cds	Chr3	10579158	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	17	A11,A21,A5,B115,B126,B17,B19,B31,B42,B87,C2,C28,C3,C61,C62,C69,D6
lof_cds	Chr3	10579167	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	19	A11,A21,A5,B115,B126,B17,B19,B31,B42,B84,B87,C2,C28,C3,C61,C62,C69,C7,D6
typical_cds_rare	Chr3	10579213	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	C64
typical_cds_rare	Chr3	10579218	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	1	C46
typical_cds_rare	Chr3	10579237	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	2	B96,D5
lof_cds	Chr3	10579242	C	CGA	INDEL	2bp_insertion	frameshift_variant	LOC131017519	SmilChr03G000924	131017519	rna-XM_057946291.1	19	A11,A5,A7,B113,B115,B130,B19,B42,B50,B52,B53,B54,B67,B86,C11,C18,C2,C58,C69