source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr3	12439616	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1	1	B104
lof_cds	Chr3	12439645	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1	1	B104
typical_cds_rare	Chr3	12439645	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1	1	B104
typical_cds_rare	Chr3	12439663	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1	1	B123
lof_cds	Chr3	12439700	TCC	T	INDEL	2bp_deletion	frameshift_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1	55	A19,A8,A9,B102,B111,B115,B126,B13,B139,B19,B25,B28,B30,B31,B47,B52,B59,B61,B63,B66,B70,B71,B72,B86,B88,B91,B94,B97,B98,C1,C11,C17,C25,C26,C30,C31,C35,C36,C40,C42,C50,C55,C56,C57,C58,C62,C69,C70,C71,C79,C87,C9,D2,D3,D8
lof_cds	Chr3	12439705	T	TTA	INDEL	2bp_insertion	frameshift_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1	46	A8,A9,B102,B111,B115,B13,B139,B19,B25,B28,B31,B47,B52,B59,B61,B63,B66,B70,B71,B88,B91,B94,B97,B98,C1,C11,C17,C25,C26,C30,C31,C35,C40,C50,C55,C56,C57,C58,C62,C69,C70,C71,C79,C87,D3,D8
typical_cds_rare	Chr3	12439715	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1	1	B122
lof_cds	Chr3	12439780	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	5	A11,B137,B34,B6,C3
typical_cds_rare	Chr3	12439780	G	GA	INDEL	1bp_insertion	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	5	A11,B137,B34,B6,C3
typical_cds_rare	Chr3	12439789	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	1	B1
lof_cds	Chr3	12439791	T	TAA	INDEL	2bp_insertion	frameshift_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	1	B34
typical_cds_rare	Chr3	12439791	T	TAA	INDEL	2bp_insertion	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	1	B34
lof_cds	Chr3	12439825	TTC	T	INDEL	2bp_deletion	frameshift_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	1	C25
typical_cds_rare	Chr3	12439825	TTC	T	INDEL	2bp_deletion	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	1	C25
lof_cds	Chr3	12439847	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	3	B117,B12,C5
typical_cds_rare	Chr3	12439847	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	3	B117,B12,C5
lof_cds	Chr3	12439848	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	2	A8,B30
typical_cds_rare	Chr3	12439848	G	GA	INDEL	1bp_insertion	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	2	A8,B30
lof_cds	Chr3	12439858	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	2	A8,B30
typical_cds_rare	Chr3	12439858	C	CT	INDEL	1bp_insertion	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	2	A8,B30
lof_cds	Chr3	12439860	A	ACT	INDEL	2bp_insertion	frameshift_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	2	A8,B30
typical_cds_rare	Chr3	12439860	A	ACT	INDEL	2bp_insertion	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	2	A8,B30
lof_cds	Chr3	12439886	TGC	T	INDEL	2bp_deletion	frameshift_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	34	A10,A19,A9,B11,B115,B126,B134,B137,B4,B57,B61,B62,B63,B70,B71,B72,B81,B83,B94,B98,C26,C30,C35,C36,C42,C56,C57,C58,C62,C70,C76,D3,D7,D8
lof_cds	Chr3	12439894	G	GAT	INDEL	2bp_insertion	frameshift_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	33	A10,A19,A9,B11,B115,B126,B134,B137,B4,B57,B61,B62,B63,B70,B71,B72,B81,B83,B94,B98,C26,C30,C35,C36,C42,C56,C57,C58,C62,C70,C76,D7,D8
typical_cds_rare	Chr3	12439919	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	2	C66,D11
typical_cds_rare	Chr3	12439920	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	5	B30,B43,B72,B97,C28
typical_cds_rare	Chr3	12440020	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	4	B106,B125,B25,B92
lof_cds	Chr3	12440115	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	4	A13,B126,B128,C58
typical_cds_rare	Chr3	12440115	TG	T	INDEL	1bp_deletion	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	4	A13,B126,B128,C58
typical_cds_rare	Chr3	12440133	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	1	A16
typical_cds_rare	Chr3	12440178	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	1	B31
typical_cds_rare	Chr3	12440181	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	3	B100,B70,C32
typical_cds_rare	Chr3	12440324	TA	*	INDEL	1bp_deletion	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	5	B108,C36,C67,C83,D6
typical_cds_rare	Chr3	12440400	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	5	B134,B28,B58,C82,D8
typical_cds_rare	Chr3	12440401	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	5	B101,B111,B19,C23,C55
lof_cds	Chr3	12440419	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	3	B62,B63,B83
typical_cds_rare	Chr3	12440419	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	3	B62,B63,B83
lof_cds	Chr3	12440426	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	11	A19,B128,B139,B14,B52,B84,B95,C20,C54,C79,C84
typical_cds_rare	Chr3	12440444	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	4	B34,B38,B39,D6
typical_cds_rare	Chr3	12440504	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	3	B111,C11,C51
lof_cds	Chr3	12440517	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	4	B111,B97,C11,C51
typical_cds_rare	Chr3	12440517	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	4	B111,B97,C11,C51
typical_cds_rare	Chr3	12440524	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	4	B111,B97,C11,C51
lof_cds	Chr3	12440527	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	3	B46,B93,C38
typical_cds_rare	Chr3	12440527	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	3	B46,B93,C38
typical_cds_rare	Chr3	12440546	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	2	B67,C51
typical_cds_rare	Chr3	12440556	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	3	B35,B46,B76
typical_cds_rare	Chr3	12440564	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	3	B114,B25,C84
typical_cds_rare	Chr3	12440615	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	4	B1,C28,C31,C32
lof_cds	Chr3	12440651	CG	C	INDEL	1bp_deletion	frameshift_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	1	C45
typical_cds_rare	Chr3	12440651	CG	C	INDEL	1bp_deletion	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	1	C45
typical_cds_rare	Chr3	12440702	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	1	B65
typical_cds_rare	Chr3	12440703	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	4	B115,B31,B90,B92
lof_cds	Chr3	12440710	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	5	B2,B22,C2,C44,C68
typical_cds_rare	Chr3	12440710	C	CT	INDEL	1bp_insertion	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	5	B2,B22,C2,C44,C68
typical_cds_rare	Chr3	12440715	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	4	B104,B24,B76,C45
lof_cds	Chr3	12440753	GTT	G	INDEL	2bp_deletion	frameshift_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	22	A18,A19,A6,B104,B111,B139,B25,B33,B35,B55,B57,B59,B63,B78,B93,B95,C31,C70,C74,C79,C84,D2
typical_cds_rare	Chr3	12440766	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	2	B1,C32
typical_cds_rare	Chr3	12440767	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	1	B75
typical_cds_rare	Chr3	12440781	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	1	B2
typical_cds_rare	Chr3	12440881	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	5	B38,B55,B75,C31,C7
typical_cds_rare	Chr3	12440888	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	2	B1,C32
typical_cds_rare	Chr3	12441106	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	1	B112
typical_cds_rare	Chr3	12441113	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	1	C23
lof_cds	Chr3	12441155	C	CAA	INDEL	2bp_insertion	frameshift_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	1	B104
typical_cds_rare	Chr3	12441155	C	CAA	INDEL	2bp_insertion	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	1	B104
typical_cds_rare	Chr3	12441195	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	1	D1
typical_cds_rare	Chr3	12441212	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	5	B44,B53,B59,C28,C64
lof_cds	Chr3	12441215	TGC	T	INDEL	2bp_deletion	frameshift_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	2	B13,B132
typical_cds_rare	Chr3	12441215	TGC	T	INDEL	2bp_deletion	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	2	B13,B132
lof_cds	Chr3	12441314	ACG	A	INDEL	2bp_deletion	frameshift_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	7	B119,B26,B52,B98,C13,C31,C47
lof_cds	Chr3	12441372	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	1	B5
typical_cds_rare	Chr3	12441372	GA	G	INDEL	1bp_deletion	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	1	B5
typical_cds_rare	Chr3	12441390	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	2	C23,C43
typical_cds_rare	Chr3	12441392	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	2	C63,C64
typical_cds_rare	Chr3	12441393	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	2	B35,B46
typical_cds_rare	Chr3	12441394	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	1	D1
typical_cds_rare	Chr3	12441554	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	2	B5,C46
typical_cds_rare	Chr3	12441768	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	2	B14,B15
typical_cds_rare	Chr3	12441798	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	1	C55
typical_cds_rare	Chr3	12441808	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	1	C55
typical_cds_rare	Chr3	12441830	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	2	B117,C41
typical_cds_rare	Chr3	12441860	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	1	C50
typical_cds_rare	Chr3	12441971	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	1	B14
typical_cds_rare	Chr3	12442039	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	4	A20,C24,C65,C84
typical_cds_rare	Chr3	12442078	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	1	C52
typical_cds_rare	Chr3	12442100	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	2	B22,C62
typical_cds_rare	Chr3	12442110	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017518	SmilChr03G001074	131017518	rna-XM_057946288.1,rna-XM_057946289.1,rna-XM_057946290.1	1	B104