source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr3	12723875	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	3	B132,B47,B56
lof_cds	Chr3	12723886	C	CAT	INDEL	2bp_insertion	frameshift_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	3	B124,B3,C56
typical_cds_rare	Chr3	12723886	C	CAT	INDEL	2bp_insertion	CDS_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	3	B124,B3,C56
lof_cds	Chr3	12723887	CCG	C	INDEL	2bp_deletion	frameshift_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	3	B124,B3,C56
typical_cds_rare	Chr3	12723887	CCG	C	INDEL	2bp_deletion	CDS_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	3	B124,B3,C56
lof_cds	Chr3	12723903	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	85	A11,A18,A6,A9,B1,B103,B108,B110,B113,B117,B119,B126,B13,B132,B133,B137,B14,B140,B16,B19,B2,B20,B27,B28,B32,B33,B35,B47,B54,B55,B56,B57,B64,B65,B66,B68,B69,B7,B71,B73,B74,B76,B77,B79,B8,B81,B84,B91,B95,B99,C1,C11,C15,C16,C19,C20,C22,C24,C26,C27,C29,C31,C32,C33,C34,C36,C38,C40,C43,C44,C45,C5,C54,C55,C59,C60,C68,C72,C77,C79,C8,C84,C86,D10,D7
typical_cds_rare	Chr3	12723927	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	4	B124,B136,B3,B47
typical_cds_rare	Chr3	12723945	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	4	A19,B65,C35,C5
typical_cds_rare	Chr3	12723951	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	1	B133
typical_cds_rare	Chr3	12723956	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	2	B42,B43
typical_cds_rare	Chr3	12723957	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	4	B21,B65,C62,D10
lof_cds	Chr3	12723965	G	GGC	INDEL	2bp_insertion	frameshift_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	1	B65
typical_cds_rare	Chr3	12723965	G	GGC	INDEL	2bp_insertion	CDS_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	1	B65
lof_cds	Chr3	12723983	G	GC	INDEL	1bp_insertion	frameshift_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	7	B102,B119,B136,B39,B47,B56,D7
lof_cds	Chr3	12724017	AAT	A	INDEL	2bp_deletion	frameshift_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	76	A13,A15,A18,A3,A4,A6,A8,B1,B101,B106,B114,B118,B12,B121,B123,B131,B134,B137,B19,B24,B25,B29,B30,B34,B35,B38,B39,B44,B45,B48,B49,B52,B61,B62,B64,B68,B70,B71,B72,B73,B75,B79,B8,B80,B86,B87,B89,B9,B91,B93,B94,C11,C13,C15,C24,C3,C36,C41,C44,C47,C53,C56,C62,C65,C69,C73,C80,C81,C82,C85,C86,C87,D1,D2,D4,D6
lof_cds	Chr3	12724024	A	ATT	INDEL	2bp_insertion	frameshift_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	76	A13,A15,A18,A3,A4,A6,A8,B1,B101,B106,B114,B118,B12,B121,B123,B131,B134,B137,B19,B24,B25,B29,B30,B34,B35,B38,B39,B44,B45,B48,B49,B52,B61,B62,B64,B68,B70,B71,B72,B73,B75,B79,B8,B80,B86,B87,B89,B9,B91,B93,B94,C11,C13,C15,C24,C3,C36,C41,C44,C47,C53,C56,C62,C65,C69,C73,C80,C81,C82,C85,C86,C87,D1,D2,D4,D6
lof_cds	Chr3	12724030	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	11	A5,B10,B134,B44,B58,B63,B77,C47,C53,C54,C64
lof_cds	Chr3	12724045	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	1	C46
typical_cds_rare	Chr3	12724045	A	AG	INDEL	1bp_insertion	CDS_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	1	C46
lof_cds	Chr3	12724068	TTC	T	INDEL	2bp_deletion	frameshift_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	24	A13,A15,A6,A8,B101,B121,B137,B38,B52,B61,B68,B71,B73,B75,B8,B80,C11,C3,C41,C47,C53,C81,C82,D2
typical_cds_rare	Chr3	12724121	AT	*	INDEL	1bp_deletion	CDS_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	2	B39,B64
lof_cds	Chr3	12724164	ATT	A	INDEL	2bp_deletion	frameshift_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	43	A11,B102,B119,B122,B126,B136,B30,B31,B38,B43,B51,B53,B6,B65,B76,B77,B9,B93,B96,C1,C11,C14,C18,C19,C2,C20,C23,C33,C41,C46,C48,C52,C6,C61,C63,C64,C66,C67,C71,C80,C83,D10,D7
lof_cds	Chr3	12724168	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	47	A11,B102,B119,B122,B126,B136,B24,B30,B31,B38,B43,B51,B53,B6,B61,B65,B76,B77,B9,B93,B96,C1,C11,C14,C18,C19,C2,C20,C23,C33,C41,C44,C46,C48,C52,C6,C61,C63,C64,C66,C67,C69,C71,C80,C83,D10,D7
lof_cds	Chr3	12724170	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	25	A4,A8,B134,B24,B29,B34,B39,B56,B61,B62,B64,B86,B91,B93,B94,C13,C15,C24,C44,C56,C65,C69,C82,C86,D6
lof_cds	Chr3	12724180	G	GC	INDEL	1bp_insertion	frameshift_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	13	A8,B134,B24,B56,B61,B62,B93,C15,C24,C44,C69,C82,C86
typical_cds_rare	Chr3	12724196	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	1	C56
lof_cds	Chr3	12724210	TGC	T	INDEL	2bp_deletion	frameshift_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	3	B76,C12,C59
typical_cds_rare	Chr3	12724210	TGC	T	INDEL	2bp_deletion	CDS_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	3	B76,C12,C59
typical_cds_rare	Chr3	12724223	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	5	B36,B76,C12,C59,D9
lof_cds	Chr3	12724226	ATG	A	INDEL	2bp_deletion	frameshift_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	3	B122,B30,B43
typical_cds_rare	Chr3	12724226	ATG	A	INDEL	2bp_deletion	CDS_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	3	B122,B30,B43
typical_cds_rare	Chr3	12724235	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	3	B7,C10,D10
typical_cds_rare	Chr3	12724259	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	1	C19
typical_cds_rare	Chr3	12724272	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	4	B7,C10,C19,C83
lof_cds	Chr3	12724309	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	2	B76,C59
typical_cds_rare	Chr3	12724309	AT	A	INDEL	1bp_deletion	CDS_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	2	B76,C59
lof_cds	Chr3	12724404	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	1	B131
typical_cds_rare	Chr3	12724404	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	1	B131
lof_cds	Chr3	12724405	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	28	A23,A5,B112,B120,B127,B128,B15,B18,B37,B49,B5,B54,B57,B58,B62,B7,B77,B88,B95,B97,C1,C34,C39,C5,C54,C57,C83,C9
lof_cds	Chr3	12724409	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	28	A23,A5,B112,B120,B127,B128,B15,B18,B37,B49,B5,B54,B57,B58,B62,B7,B77,B88,B95,B97,C1,C34,C39,C5,C54,C57,C83,C9
lof_cds	Chr3	12724414	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	28	A23,A5,B112,B120,B127,B128,B15,B18,B37,B49,B5,B54,B57,B58,B62,B7,B77,B88,B95,B97,C1,C34,C39,C5,C54,C57,C83,C9
lof_cds	Chr3	12724419	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	28	A23,A5,B112,B120,B127,B128,B15,B18,B37,B49,B5,B54,B57,B58,B62,B7,B77,B88,B95,B97,C1,C34,C39,C5,C54,C57,C83,C9
typical_cds_rare	Chr3	12724484	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	2	B5,B57
typical_cds_rare	Chr3	12724485	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	1	D11
lof_cds	Chr3	12724631	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	9	A21,A22,A5,B103,B14,C34,C45,C49,C63
typical_cds_rare	Chr3	12724645	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	4	A10,B48,C45,D5
lof_cds	Chr3	12724689	CG	C	INDEL	1bp_deletion	frameshift_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	8	A15,A16,B136,B21,B26,B4,C28,D4
lof_cds	Chr3	12724717	G	GT	INDEL	1bp_insertion	frameshift_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	15	A1,A14,A19,A3,B108,B11,B17,B20,B33,B60,B68,C37,C50,C73,D5
typical_cds_rare	Chr3	12724718	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	1	C61
typical_cds_rare	Chr3	12724725	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	3	B40,B41,C8
typical_cds_rare	Chr3	12724734	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	1	B14
lof_cds	Chr3	12724842	T	TTC	INDEL	2bp_insertion	frameshift_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	7	A11,B61,B7,B9,C18,C48,C71
lof_cds	Chr3	12724844	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	7	A11,B61,B7,B9,C18,C48,C71
typical_cds_rare	Chr3	12724846	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	1	D6
lof_cds	Chr3	12724852	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	1	B133
typical_cds_rare	Chr3	12724852	GT	G	INDEL	1bp_deletion	CDS_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	1	B133
lof_cds	Chr3	12724858	C	CTA	INDEL	2bp_insertion	frameshift_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	1	B30
typical_cds_rare	Chr3	12724858	C	CTA	INDEL	2bp_insertion	CDS_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	1	B30
lof_cds	Chr3	12724859	G	GAC	INDEL	2bp_insertion	frameshift_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	9	A11,B132,B61,B7,B9,C18,C19,C48,C71
lof_cds	Chr3	12724860	CAG	C	INDEL	2bp_deletion	frameshift_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	9	A11,B132,B30,B61,B7,C18,C19,C48,C71
typical_cds_rare	Chr3	12724886	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	4	B132,B66,C63,C67
lof_cds	Chr3	12724888	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	2	C63,C67
typical_cds_rare	Chr3	12724888	T	TG	INDEL	1bp_insertion	CDS_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	2	C63,C67
typical_cds_rare	Chr3	12724914	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018352	SmilChr03G001105	131018352	rna-XM_057947081.1	1	D6