source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr3	12888158	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	2	B47,C45
lof_cds	Chr3	12888185	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	51	A20,A23,A5,A7,A9,B104,B128,B134,B15,B18,B22,B26,B28,B3,B37,B44,B49,B5,B52,B54,B57,B62,B63,B7,B77,B8,B80,B84,B88,B95,B97,C1,C16,C24,C3,C34,C37,C42,C47,C5,C53,C54,C60,C78,C8,C82,C83,C86,C87,C9,D7
lof_cds	Chr3	12888205	T	TGA	INDEL	2bp_insertion	frameshift_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	6	B120,B129,B24,B92,C19,C46
typical_cds_rare	Chr3	12888237	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	1	B30
lof_cds	Chr3	12888242	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	1	B35
typical_cds_rare	Chr3	12888242	TA	T	INDEL	1bp_deletion	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	1	B35
typical_cds_rare	Chr3	12888300	AG	*	INDEL	1bp_deletion	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	2	C10,C74
lof_cds	Chr3	12888302	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	2	B69,C38
typical_cds_rare	Chr3	12888302	AC	A	INDEL	1bp_deletion	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	2	B69,C38
typical_cds_rare	Chr3	12888324	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	5	A10,B111,B48,C45,D5
lof_cds	Chr3	12888326	CCT	C	INDEL	2bp_deletion	frameshift_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	5	A10,B111,B48,C45,D5
typical_cds_rare	Chr3	12888326	CCT	C	INDEL	2bp_deletion	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	5	A10,B111,B48,C45,D5
lof_cds	Chr3	12888327	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	116	A1,A15,A16,A18,A2,A22,A23,A3,A4,A6,A8,B1,B100,B101,B102,B103,B106,B107,B110,B113,B114,B115,B117,B118,B119,B12,B123,B124,B125,B129,B13,B135,B140,B18,B19,B2,B20,B22,B23,B25,B27,B28,B30,B31,B33,B34,B38,B39,B4,B40,B44,B45,B49,B52,B54,B55,B56,B62,B64,B65,B66,B68,B69,B70,B71,B73,B74,B79,B80,B81,B85,B86,B88,B91,B94,B96,B97,C12,C14,C2,C20,C21,C23,C24,C27,C28,C37,C39,C4,C41,C42,C48,C49,C50,C55,C56,C57,C58,C60,C62,C63,C65,C67,C72,C73,C76,C77,C81,C82,C85,C86,C87,D1,D10,D2,D6
lof_cds	Chr3	12888330	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	5	A10,B111,B48,C45,D5
typical_cds_rare	Chr3	12888330	T	TA	INDEL	1bp_insertion	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	5	A10,B111,B48,C45,D5
typical_cds_rare	Chr3	12888355	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	2	B12,D2
typical_cds_rare	Chr3	12888366	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	3	B131,B44,C30
typical_cds_rare	Chr3	12888376	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	3	B132,B24,C19
lof_cds	Chr3	12888423	C	CAT	INDEL	2bp_insertion	frameshift_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	1	B104
typical_cds_rare	Chr3	12888423	C	CAT	INDEL	2bp_insertion	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	1	B104
typical_cds_rare	Chr3	12888432	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	2	B69,C38
typical_cds_rare	Chr3	12888495	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	3	B131,B44,C30
lof_cds	Chr3	12888503	TGC	T	INDEL	2bp_deletion	frameshift_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	64	A10,A14,A23,A24,A5,A8,A9,B1,B104,B108,B109,B11,B118,B126,B127,B128,B134,B138,B139,B15,B17,B22,B23,B32,B35,B37,B48,B49,B5,B54,B57,B62,B63,B7,B77,B78,B84,B87,B88,B90,B95,B97,C1,C16,C27,C3,C31,C34,C35,C36,C43,C45,C49,C5,C53,C54,C75,C83,C84,C86,C9,D1,D3,D5
lof_cds	Chr3	12888797	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	1	B94
typical_cds_rare	Chr3	12888797	TC	T	INDEL	1bp_deletion	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	1	B94
typical_cds_rare	Chr3	12888823	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	2	B103,D10
typical_cds_rare	Chr3	12888839	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	2	B102,B117
typical_cds_rare	Chr3	12888852	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	2	B131,C30
typical_cds_rare	Chr3	12888882	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	1	B22
typical_cds_rare	Chr3	12888892	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	5	B107,B122,B67,C13,C46
lof_cds	Chr3	12888919	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	41	A15,A16,A18,A23,A5,B1,B101,B103,B114,B118,B127,B128,B13,B140,B15,B18,B34,B37,B42,B43,B62,B63,B7,B73,B80,B81,B84,B88,B95,C1,C16,C48,C5,C54,C57,C72,C81,C82,C86,D1,D10
lof_cds	Chr3	12888929	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	40	A15,A16,A18,A23,A5,B1,B101,B103,B114,B118,B127,B128,B13,B140,B15,B18,B34,B37,B42,B43,B62,B63,B7,B73,B80,B81,B84,B88,B95,C1,C16,C5,C54,C57,C72,C81,C82,C86,D1,D10
lof_cds	Chr3	12888989	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	48	A14,A19,A24,B104,B105,B107,B114,B12,B125,B126,B132,B135,B137,B138,B139,B14,B2,B24,B31,B34,B45,B48,B60,B65,B67,B68,B70,B73,B75,B87,B90,B96,C19,C20,C27,C4,C44,C46,C52,C61,C62,C65,C70,C72,C74,C80,D2,D5
typical_cds_rare	Chr3	12889005	AC	*	INDEL	1bp_deletion	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	5	B1,B111,B120,B60,C30
lof_cds	Chr3	12889014	CTT	C	INDEL	2bp_deletion	frameshift_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	47	A15,A16,A18,A23,B101,B103,B110,B118,B123,B125,B128,B13,B134,B137,B140,B15,B18,B33,B49,B5,B52,B54,B55,B57,B62,B63,B69,B70,B77,B80,B81,B88,B95,B98,C1,C3,C5,C55,C57,C58,C62,C72,C81,C86,D10,D2,D9
lof_cds	Chr3	12889025	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	42	A15,A16,A18,A23,A5,B1,B101,B103,B114,B118,B127,B128,B13,B140,B15,B18,B34,B37,B42,B43,B56,B62,B63,B7,B73,B80,B81,B84,B88,B95,C1,C16,C48,C5,C54,C57,C72,C81,C82,C86,D1,D10
lof_cds	Chr3	12889061	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	42	A15,A16,A18,A23,A5,B1,B101,B103,B114,B118,B127,B128,B13,B140,B15,B18,B34,B37,B42,B43,B56,B62,B63,B7,B73,B80,B81,B84,B88,B95,C1,C16,C48,C5,C54,C57,C72,C81,C82,C86,D1,D10
lof_cds	Chr3	12889097	AAC	A	INDEL	2bp_deletion	frameshift_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	8	B111,B23,B50,B60,C30,C39,C71,C8
lof_cds	Chr3	12889099	CCT	C	INDEL	2bp_deletion	frameshift_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	54	A14,A19,A24,B104,B105,B107,B114,B12,B122,B125,B126,B132,B135,B137,B138,B139,B14,B16,B2,B24,B31,B34,B45,B48,B52,B65,B67,B68,B70,B73,B74,B75,B79,B87,B90,B96,C19,C20,C27,C4,C44,C46,C52,C56,C6,C61,C62,C65,C70,C72,C80,D2,D3,D5
lof_cds	Chr3	12889104	A	AGG	INDEL	2bp_insertion	frameshift_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	56	A14,A19,A24,B104,B105,B107,B114,B12,B122,B125,B126,B132,B135,B137,B138,B139,B14,B16,B2,B24,B31,B34,B45,B48,B52,B60,B65,B67,B68,B70,B73,B74,B75,B79,B87,B90,B96,C19,C20,C27,C4,C44,C46,C52,C56,C6,C61,C62,C65,C70,C71,C72,C80,D2,D3,D5
lof_cds	Chr3	12889108	CAG	C	INDEL	2bp_deletion	frameshift_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	54	A14,A19,A24,B104,B105,B107,B114,B12,B122,B125,B126,B132,B137,B138,B139,B14,B16,B2,B24,B31,B34,B45,B48,B52,B60,B65,B67,B68,B70,B73,B74,B75,B87,B90,B96,C19,C20,C27,C4,C44,C46,C52,C6,C61,C62,C65,C70,C71,C72,C73,C80,D2,D3,D5
lof_cds	Chr3	12889111	CGA	C	INDEL	2bp_deletion	frameshift_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	15	A18,A23,A5,B103,B114,B118,B13,B15,B34,B42,B43,B73,B88,C72,C82
lof_cds	Chr3	12889115	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	79	A10,A14,A19,A21,A23,A24,A5,B103,B104,B105,B107,B111,B114,B118,B12,B122,B123,B125,B126,B13,B132,B135,B137,B138,B139,B14,B15,B16,B2,B24,B31,B34,B35,B41,B42,B43,B45,B48,B52,B59,B60,B65,B67,B68,B70,B73,B74,B75,B79,B87,B89,B90,B93,B96,C16,C19,C20,C27,C3,C4,C44,C45,C46,C52,C53,C6,C61,C62,C65,C70,C71,C72,C73,C80,C82,D2,D3,D4,D5
lof_cds	Chr3	12889149	CCA	C	INDEL	2bp_deletion	frameshift_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	3	B22,B23,C39
typical_cds_rare	Chr3	12889149	CCA	C	INDEL	2bp_deletion	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	3	B22,B23,C39
typical_cds_rare	Chr3	12889154	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	4	B63,B83,C32,C68
typical_cds_rare	Chr3	12889160	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	4	B140,C74,C79,D4
typical_cds_rare	Chr3	12889227	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	1	B122
typical_cds_rare	Chr3	12889275	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	2	C55,D8
typical_cds_rare	Chr3	12889276	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	3	B133,C64,C66
typical_cds_rare	Chr3	12889317	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	1	D6
typical_cds_rare	Chr3	12889318	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	1	D6
typical_cds_rare	Chr3	12889319	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	2	C21,C4
typical_cds_rare	Chr3	12889337	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	3	A6,B104,C71
typical_cds_rare	Chr3	12889359	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	1	B123
typical_cds_rare	Chr3	12889375	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	3	B22,B23,C39
lof_cds	Chr3	12889387	G	GT	INDEL	1bp_insertion	frameshift_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	2	B30,C28
typical_cds_rare	Chr3	12889387	G	GT	INDEL	1bp_insertion	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	2	B30,C28
lof_cds	Chr3	12889393	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	64	A11,A16,A2,B107,B108,B115,B122,B126,B131,B135,B136,B21,B24,B26,B31,B4,B41,B46,B50,B51,B6,B60,B63,B65,B67,B7,B76,B77,B83,B9,B93,B99,C1,C10,C11,C13,C15,C18,C19,C2,C20,C21,C22,C23,C26,C28,C32,C33,C4,C44,C46,C48,C52,C58,C6,C61,C63,C66,C67,C68,C69,C79,C83,D4
lof_cds	Chr3	12889419	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	119	A10,A14,A18,A19,A2,A23,A24,A7,A8,A9,B1,B100,B103,B104,B105,B106,B108,B109,B11,B110,B111,B112,B113,B114,B117,B118,B12,B120,B125,B127,B129,B13,B133,B134,B137,B138,B139,B14,B15,B16,B17,B19,B2,B20,B22,B23,B27,B28,B29,B3,B34,B36,B37,B4,B42,B43,B45,B46,B48,B52,B53,B56,B64,B66,B68,B70,B71,B73,B74,B75,B78,B79,B82,B84,B87,B88,B90,B92,B95,B96,B98,C12,C27,C30,C31,C35,C36,C40,C41,C43,C47,C51,C56,C62,C64,C65,C66,C7,C70,C71,C72,C73,C74,C75,C76,C77,C8,C80,C82,C84,C86,C9,D1,D11,D2,D3,D5,D6,D8
lof_cds	Chr3	12889467	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	62	A15,A16,A18,A23,A5,A6,B1,B10,B101,B103,B104,B110,B113,B114,B123,B127,B128,B13,B134,B140,B15,B16,B18,B25,B30,B33,B40,B48,B52,B54,B57,B62,B63,B69,B7,B70,B75,B77,B80,B81,B88,B95,B98,C15,C16,C18,C28,C34,C41,C48,C5,C54,C55,C57,C62,C72,C73,C81,C83,D10,D2,D9
typical_cds_rare	Chr3	12889501	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	3	A9,B131,B99
typical_cds_rare	Chr3	12889512	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	2	B22,B23
lof_cds	Chr3	12889539	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	67	A7,A8,B1,B100,B106,B108,B109,B11,B110,B112,B118,B119,B125,B127,B133,B134,B16,B17,B19,B20,B21,B27,B28,B29,B35,B36,B4,B43,B53,B59,B64,B67,B68,B71,B76,B82,B83,B9,B92,B98,C12,C13,C15,C28,C31,C32,C36,C4,C46,C47,C51,C55,C59,C62,C66,C68,C73,C74,C76,C77,C8,C80,C9,D1,D3,D8,D9
lof_cds	Chr3	12889603	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	3	B30,B48,C28
typical_cds_rare	Chr3	12889603	TC	T	INDEL	1bp_deletion	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	3	B30,B48,C28
typical_cds_rare	Chr3	12889622	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017563	SmilChr03G001118	131017563	rna-XM_057946364.1	2	B133,C66