source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr3	13060726	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	1	C42
typical_cds_rare	Chr3	13060740	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	4	B120,B138,B40,D2
typical_cds_rare	Chr3	13060762	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	4	B113,B41,B52,C86
typical_cds_rare	Chr3	13060766	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	4	A5,B24,B78,B98
typical_cds_rare	Chr3	13060778	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	2	A22,C27
lof_cds	Chr3	13060830	ACG	A	INDEL	2bp_deletion	frameshift_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	1	B24
typical_cds_rare	Chr3	13060830	ACG	A	INDEL	2bp_deletion	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	1	B24
typical_cds_rare	Chr3	13060831	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	3	B118,B132,B72
lof_cds	Chr3	13060837	G	GTT	INDEL	2bp_insertion	frameshift_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	3	B24,B85,C28
typical_cds_rare	Chr3	13060837	G	GTT	INDEL	2bp_insertion	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	3	B24,B85,C28
typical_cds_rare	Chr3	13060850	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	3	B24,B85,C28
typical_cds_rare	Chr3	13060868	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	3	B24,B85,C28
lof_cds	Chr3	13060887	G	GTA	INDEL	2bp_insertion	frameshift_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	1	C55
typical_cds_rare	Chr3	13060887	G	GTA	INDEL	2bp_insertion	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	1	C55
typical_cds_rare	Chr3	13060896	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	2	A8,B48
typical_cds_rare	Chr3	13060905	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	3	B24,B85,C28
typical_cds_rare	Chr3	13060907	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	3	A9,B139,C49
typical_cds_rare	Chr3	13060918	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	2	B96,C5
typical_cds_rare	Chr3	13060921	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	3	B24,B85,C28
typical_cds_rare	Chr3	13060947	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	4	A8,B140,C65,D11
typical_cds_rare	Chr3	13060963	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	2	B10,B44
typical_cds_rare	Chr3	13060969	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	3	B10,B30,B44
typical_cds_rare	Chr3	13061010	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	1	B24
typical_cds_rare	Chr3	13061043	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	3	B83,C59,D10
typical_cds_rare	Chr3	13061064	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	3	B128,B54,B86
typical_cds_rare	Chr3	13061081	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	4	A9,B105,B106,C47
typical_cds_rare	Chr3	13062867	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	2	B31,D10
lof_cds	Chr3	13062913	A	ATG	INDEL	2bp_insertion	frameshift_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	2	A20,D7
typical_cds_rare	Chr3	13062913	A	ATG	INDEL	2bp_insertion	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	2	A20,D7
lof_cds	Chr3	13062915	GTA	G	INDEL	2bp_deletion	frameshift_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	2	A20,D7
typical_cds_rare	Chr3	13062915	GTA	G	INDEL	2bp_deletion	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	2	A20,D7
typical_cds_rare	Chr3	13062924	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	2	B14,B20
typical_cds_rare	Chr3	13062925	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	2	B1,C4
typical_cds_rare	Chr3	13062931	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	2	B102,C71
typical_cds_rare	Chr3	13062943	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	4	B118,B127,B71,C77
typical_cds_rare	Chr3	13063068	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	4	B131,B2,B74,C14
typical_cds_rare	Chr3	13063071	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	3	B83,C32,C68
typical_cds_rare	Chr3	13063081	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	4	B107,B20,C10,C14
typical_cds_rare	Chr3	13063163	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	1	B124
typical_cds_rare	Chr3	13063175	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	5	A13,A3,B112,B121,B29
typical_cds_rare	Chr3	13063866	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	2	B131,C28
typical_cds_rare	Chr3	13063887	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	1	B9
typical_cds_rare	Chr3	13063906	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	3	B36,B83,C59
typical_cds_rare	Chr3	13063923	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	1	B12
typical_cds_rare	Chr3	13064002	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	5	A6,B12,B55,C13,C28
typical_cds_rare	Chr3	13064007	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	3	B11,B15,B48
lof_cds	Chr3	13064071	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	1	B97
typical_cds_rare	Chr3	13064071	TG	T	INDEL	1bp_deletion	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	1	B97
typical_cds_rare	Chr3	13064101	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	1	D10
typical_cds_rare	Chr3	13064111	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	1	B117
typical_cds_rare	Chr3	13064118	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	1	A9
typical_cds_rare	Chr3	13064121	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	2	B105,B72
lof_cds	Chr3	13064138	TAC	T	INDEL	2bp_deletion	frameshift_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	25	A13,A7,B105,B106,B121,B139,B20,B29,B30,B34,B53,B61,B72,B8,B86,C11,C29,C33,C36,C45,C51,C65,C69,C70,C80
lof_cds	Chr3	13064155	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	1	D10
typical_cds_rare	Chr3	13064155	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	1	D10
lof_cds	Chr3	13064159	ATC	A	INDEL	2bp_deletion	frameshift_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	145	A1,A10,A14,A15,A16,A20,A21,A22,A23,A24,A25,A4,A5,A6,B101,B104,B107,B109,B111,B114,B115,B120,B122,B125,B128,B129,B131,B133,B134,B138,B17,B18,B19,B2,B21,B22,B23,B24,B25,B26,B27,B3,B33,B35,B36,B4,B40,B41,B42,B43,B44,B45,B49,B5,B51,B54,B55,B56,B57,B58,B59,B6,B60,B62,B65,B66,B67,B69,B7,B70,B75,B77,B79,B8,B80,B81,B82,B84,B85,B86,B87,B88,B89,B91,B93,B94,B96,B97,C12,C17,C20,C23,C24,C25,C26,C27,C28,C3,C30,C35,C37,C38,C39,C4,C40,C41,C42,C43,C44,C46,C47,C48,C5,C50,C51,C52,C53,C55,C58,C59,C6,C60,C62,C64,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C81,C82,C83,C85,C86,D11,D3,D6,D7,D8,D9
lof_cds	Chr3	13064164	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	142	A1,A10,A14,A15,A16,A20,A21,A22,A23,A24,A25,A4,A5,A6,B101,B104,B107,B109,B111,B114,B115,B120,B122,B125,B128,B129,B131,B133,B134,B138,B17,B18,B19,B2,B21,B22,B23,B24,B25,B26,B27,B3,B33,B35,B36,B4,B40,B41,B42,B43,B44,B45,B49,B5,B51,B54,B55,B56,B57,B58,B59,B6,B60,B62,B65,B66,B67,B69,B7,B70,B75,B77,B79,B8,B80,B81,B82,B84,B85,B86,B87,B88,B89,B91,B93,B94,B96,B97,C12,C17,C23,C24,C25,C26,C27,C3,C30,C35,C37,C38,C39,C4,C40,C41,C42,C43,C44,C46,C47,C48,C5,C50,C51,C52,C53,C55,C58,C59,C60,C62,C64,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C81,C82,C83,C85,C86,D11,D3,D6,D7,D8,D9
lof_cds	Chr3	13064165	C	CCG	INDEL	2bp_insertion	frameshift_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	182	A1,A10,A14,A15,A16,A18,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,B10,B101,B104,B107,B108,B109,B111,B113,B114,B115,B12,B120,B122,B125,B127,B128,B129,B131,B133,B134,B135,B137,B138,B14,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B3,B30,B31,B33,B34,B35,B36,B37,B4,B40,B41,B42,B43,B44,B45,B46,B49,B5,B50,B51,B52,B54,B55,B56,B57,B58,B59,B6,B60,B62,B63,B65,B66,B67,B69,B7,B70,B75,B77,B79,B8,B80,B81,B82,B84,B85,B86,B87,B88,B89,B91,B92,B93,B94,B96,B97,C1,C10,C12,C15,C16,C17,C18,C19,C2,C21,C23,C24,C25,C26,C27,C3,C30,C31,C34,C35,C37,C38,C39,C4,C40,C41,C42,C43,C44,C46,C47,C48,C5,C50,C51,C52,C53,C54,C55,C58,C59,C60,C61,C62,C63,C64,C66,C67,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C81,C82,C83,C85,C86,C9,D10,D11,D3,D6,D7,D9
typical_cds_rare	Chr3	13064205	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	1	C68
lof_cds	Chr3	13064209	GC	G	INDEL	1bp_deletion	frameshift_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	1	B86
typical_cds_rare	Chr3	13064209	GC	G	INDEL	1bp_deletion	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	1	B86
typical_cds_rare	Chr3	13064213	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	5	A24,B100,C15,C35,C73
typical_cds_rare	Chr3	13064270	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	1	B83
typical_cds_rare	Chr3	13064288	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	5	B106,B119,B27,B97,C76
typical_cds_rare	Chr3	13064292	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	4	B102,B131,B74,C14
typical_cds_rare	Chr3	13064308	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	2	A9,C71
typical_cds_rare	Chr3	13064349	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	5	B63,B83,C32,C68,C79
typical_cds_rare	Chr3	13064382	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	1	C47
typical_cds_rare	Chr3	13064508	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	1	C47
typical_cds_rare	Chr3	13064526	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	3	B13,C28,D11
typical_cds_rare	Chr3	13064589	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	1	C77
lof_cds	Chr3	13064628	C	CCA	INDEL	2bp_insertion	frameshift_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	66	A11,A14,A21,A3,A5,A6,A7,A8,A9,B101,B103,B105,B111,B115,B123,B13,B131,B135,B140,B20,B31,B33,B38,B39,B41,B47,B48,B56,B66,B7,B76,B77,B79,B8,B80,B89,B90,B99,C11,C12,C19,C23,C30,C32,C43,C49,C50,C52,C57,C60,C63,C64,C66,C69,C72,C73,C75,C76,C78,C79,C82,D10,D4,D5,D6,D9
lof_cds	Chr3	13064629	ATG	A	INDEL	2bp_deletion	frameshift_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	66	A11,A14,A21,A3,A5,A6,A7,A8,A9,B101,B103,B105,B111,B115,B123,B13,B131,B135,B140,B20,B31,B33,B38,B39,B41,B47,B48,B56,B66,B7,B76,B77,B79,B8,B80,B89,B90,B99,C11,C12,C19,C23,C30,C32,C43,C49,C50,C52,C57,C60,C63,C64,C66,C69,C72,C73,C75,C76,C78,C79,C82,D10,D4,D5,D6,D9
typical_cds_rare	Chr3	13064733	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	2	A11,A9
typical_cds_rare	Chr3	13064839	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	1	B131
lof_cds	Chr3	13064863	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	1	B137
typical_cds_rare	Chr3	13064863	TC	T	INDEL	1bp_deletion	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	1	B137
lof_cds	Chr3	13065014	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	4	A2,B41,C10,C74
typical_cds_rare	Chr3	13065014	AT	A	INDEL	1bp_deletion	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	4	A2,B41,C10,C74
typical_cds_rare	Chr3	13065185	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	1	C47
typical_cds_rare	Chr3	13065246	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	1	B31
lof_cds	Chr3	13065277	GC	G	INDEL	1bp_deletion	frameshift_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	1	B108
typical_cds_rare	Chr3	13065277	GC	G	INDEL	1bp_deletion	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	1	B108
lof_cds	Chr3	13065424	T	TTG	INDEL	2bp_insertion	frameshift_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	2	A24,B58
typical_cds_rare	Chr3	13065424	T	TTG	INDEL	2bp_insertion	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	2	A24,B58
lof_cds	Chr3	13065425	C	CGT	INDEL	2bp_insertion	frameshift_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	123	A10,A14,A15,A16,A19,A20,A22,A23,A25,A4,A7,A8,B1,B10,B100,B103,B108,B115,B117,B12,B122,B123,B124,B126,B127,B128,B129,B13,B130,B131,B132,B135,B136,B138,B18,B19,B21,B23,B24,B25,B28,B30,B33,B37,B38,B39,B40,B41,B42,B47,B48,B5,B50,B51,B52,B53,B54,B56,B61,B62,B65,B66,B68,B69,B74,B75,B76,B77,B83,B85,B89,B90,B91,B93,B95,B96,B97,B98,C1,C15,C16,C17,C19,C21,C23,C24,C28,C29,C3,C30,C31,C34,C37,C4,C41,C44,C45,C49,C5,C50,C52,C54,C55,C56,C57,C59,C6,C60,C61,C63,C67,C69,C70,C74,C77,C8,C82,D1,D10,D3,D5,D6,D7
lof_cds	Chr3	13065427	T	TCG	INDEL	2bp_insertion	frameshift_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	135	A11,A13,A16,A2,A22,A23,A3,A5,A6,B10,B102,B104,B107,B108,B109,B11,B111,B113,B117,B12,B120,B122,B125,B127,B128,B133,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B2,B20,B21,B22,B24,B3,B31,B33,B34,B35,B37,B4,B40,B41,B44,B46,B47,B49,B5,B50,B52,B54,B55,B57,B60,B62,B63,B65,B67,B68,B69,B7,B70,B74,B77,B78,B82,B83,B84,B86,B88,B9,B90,B92,B93,B95,B97,B99,C1,C10,C13,C14,C15,C16,C18,C19,C2,C21,C23,C24,C27,C28,C3,C31,C32,C33,C34,C36,C37,C38,C4,C43,C46,C47,C48,C54,C58,C60,C61,C63,C64,C67,C68,C71,C74,C77,C78,C79,C82,C83,C84,C85,C9,D10,D11,D2,D4,D7,D9
typical_cds_rare	Chr3	13065445	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017504	SmilChr03G001131	131017504	rna-XM_057946260.1	1	C24