source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr3	13222918	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	8	B118,B127,B22,B23,B54,B71,B98,C39
typical_cds_rare	Chr3	13222945	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	1	B10
typical_cds_rare	Chr3	13223046	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	4	B63,B83,C32,C68
lof_cds	Chr3	13223137	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	44	A10,A13,B105,B11,B117,B118,B12,B124,B127,B131,B14,B15,B16,B20,B22,B23,B30,B34,B5,B53,B54,B55,B64,B71,B74,B86,B98,B99,C13,C14,C15,C18,C2,C22,C24,C29,C36,C39,C55,C63,C80,C87,D10,D5
typical_cds_rare	Chr3	13223161	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	1	B123
lof_cds	Chr3	13223189	AAT	A	INDEL	2bp_deletion	frameshift_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	54	A13,A21,A25,A5,A7,B105,B120,B121,B129,B134,B137,B20,B24,B28,B29,B32,B34,B45,B47,B48,B49,B53,B59,B70,B76,B78,B79,B86,B87,B90,B92,B93,B94,B98,C15,C18,C24,C30,C32,C33,C36,C39,C45,C49,C53,C60,C64,C65,C68,C7,C70,C72,D1,D9
lof_cds	Chr3	13223202	C	CT	INDEL	1bp_insertion	stop_gained,frameshift_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	26	A10,A13,A7,B105,B106,B121,B20,B29,B32,B34,B47,B48,B53,B78,B86,B87,B98,C33,C36,C39,C45,C49,C65,C68,C70,D1
lof_cds	Chr3	13223205	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	11	A13,B105,B106,B134,B20,B29,B34,B86,C45,C60,D1
lof_cds	Chr3	13223212	A	ATG	INDEL	2bp_insertion	frameshift_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	31	A13,A21,A25,A9,B105,B106,B120,B129,B134,B137,B20,B24,B29,B45,B49,B59,B76,B79,B86,B93,B94,B96,C32,C45,C51,C53,C60,C7,C72,C75,D9
lof_cds	Chr3	13223213	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	24	A10,A13,A5,A7,B105,B113,B121,B20,B29,B32,B47,B48,B53,B78,B86,B98,C33,C36,C39,C45,C49,C65,C68,C70
typical_cds_rare	Chr3	13223220	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	2	B50,C60
typical_cds_rare	Chr3	13223252	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	5	B102,B115,B39,B81,C57
typical_cds_rare	Chr3	13223264	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	2	B135,B34
typical_cds_rare	Chr3	13223265	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	5	A9,B30,B99,C22,D11
typical_cds_rare	Chr3	13223272	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	5	B134,B70,C18,C60,C75
lof_cds	Chr3	13223283	A	ACG	INDEL	2bp_insertion	frameshift_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	40	A11,A13,A5,A9,B102,B113,B115,B122,B134,B15,B24,B32,B34,B39,B43,B61,B78,B8,B81,B82,B86,B96,B98,B99,C14,C31,C36,C39,C42,C45,C47,C49,C51,C57,C60,C68,C70,C9,D6,D9
typical_cds_rare	Chr3	13223289	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	2	B4,B8
lof_cds	Chr3	13223308	AGG	A	INDEL	2bp_deletion	frameshift_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	14	A2,A3,B123,B46,B60,B93,C10,C19,C48,C58,C63,C64,C83,D4
lof_cds	Chr3	13223313	T	TTC	INDEL	2bp_insertion	frameshift_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	14	A2,A3,B123,B46,B60,B93,C10,C19,C48,C58,C63,C64,C83,D4
typical_cds_rare	Chr3	13223324	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	3	A4,B134,C18
lof_cds	Chr3	13223366	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	74	A1,A13,A14,A16,A21,A22,A23,A4,A7,A9,B101,B105,B125,B126,B13,B137,B140,B15,B18,B22,B23,B24,B26,B39,B4,B40,B43,B46,B48,B54,B57,B59,B61,B64,B67,B68,B80,B81,B82,B85,B86,B88,B91,B94,C10,C13,C15,C17,C2,C20,C23,C27,C28,C33,C36,C39,C42,C46,C48,C5,C51,C52,C55,C58,C6,C61,C63,C64,C67,C81,C82,C87,D6,D9
lof_cds	Chr3	13223368	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	2	A4,C18
typical_cds_rare	Chr3	13223368	AG	A	INDEL	1bp_deletion	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	2	A4,C18
lof_cds	Chr3	13223419	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	2	A4,C18
typical_cds_rare	Chr3	13223419	TC	T	INDEL	1bp_deletion	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	2	A4,C18
lof_cds	Chr3	13223426	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	2	A4,C18
typical_cds_rare	Chr3	13223426	C	CT	INDEL	1bp_insertion	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	2	A4,C18
typical_cds_rare	Chr3	13223476	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	1	B75
lof_cds	Chr3	13223481	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	18	A11,B102,B119,B124,B136,B140,B47,B7,B72,B83,B99,C33,C45,C5,C55,C56,C57,C69
lof_cds	Chr3	13223484	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	19	A11,B102,B119,B124,B136,B140,B47,B7,B72,B83,B99,C33,C36,C45,C5,C55,C56,C57,C69
lof_cds	Chr3	13223508	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	5	A5,A7,A9,B101,B11
typical_cds_rare	Chr3	13223508	G	GA	INDEL	1bp_insertion	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	5	A5,A7,A9,B101,B11
typical_cds_rare	Chr3	13223604	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	4	B8,C47,C60,D9
typical_cds_rare	Chr3	13223612	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	5	B105,B140,B63,B83,C42
lof_cds	Chr3	13223617	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	5	A4,B107,B114,B18,B67
typical_cds_rare	Chr3	13223617	AC	A	INDEL	1bp_deletion	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	5	A4,B107,B114,B18,B67
typical_cds_rare	Chr3	13223628	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	5	B74,B78,C21,C31,C34
lof_cds	Chr3	13223667	T	TCC	INDEL	2bp_insertion	frameshift_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	15	A15,B12,B131,B17,B21,B24,B26,B4,B40,B68,B78,C13,C28,C58,D2
lof_cds	Chr3	13223675	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	4	B83,B99,C47,C60
typical_cds_rare	Chr3	13223675	AC	A	INDEL	1bp_deletion	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	4	B83,B99,C47,C60
lof_cds	Chr3	13223684	A	AC	INDEL	1bp_insertion	frameshift_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	3	B4,B68,B79
typical_cds_rare	Chr3	13223684	A	AC	INDEL	1bp_insertion	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	3	B4,B68,B79
typical_cds_rare	Chr3	13223735	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	1	B30
typical_cds_rare	Chr3	13223773	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	4	B102,C14,C8,D10
typical_cds_rare	Chr3	13223809	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	1	B98
typical_cds_rare	Chr3	13223834	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	5	A18,A5,B78,C30,C45
typical_cds_rare	Chr3	13223863	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	2	B2,C14
lof_cds	Chr3	13223890	ATT	A	INDEL	2bp_deletion	frameshift_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	84	A14,A16,A18,A2,A24,A3,A5,A8,A9,B1,B10,B100,B11,B111,B117,B121,B123,B130,B135,B136,B139,B14,B15,B16,B17,B20,B26,B32,B33,B39,B41,B42,B44,B46,B47,B48,B49,B57,B63,B64,B7,B71,B78,B80,B82,B83,B87,B88,B90,B91,B97,B98,C10,C15,C16,C20,C21,C23,C3,C30,C31,C32,C34,C36,C37,C4,C45,C49,C53,C56,C63,C67,C68,C74,C79,C84,C85,C87,C9,D1,D10,D3,D5,D6
typical_cds_rare	Chr3	13223949	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	1	D10
typical_cds_rare	Chr3	13223959	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	1	C14
typical_cds_rare	Chr3	13223984	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	1	C14
typical_cds_rare	Chr3	13223997	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	1	C14
typical_cds_rare	Chr3	13224035	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	3	B134,B90,C15
lof_cds	Chr3	13224047	CT	C	INDEL	1bp_deletion	frameshift_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	4	B31,C42,C65,D11
typical_cds_rare	Chr3	13224047	CT	C	INDEL	1bp_deletion	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	4	B31,C42,C65,D11
typical_cds_rare	Chr3	13224058	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	5	A7,B103,B106,C31,C63
typical_cds_rare	Chr3	13224082	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	3	B16,B92,C18
typical_cds_rare	Chr3	13224108	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	1	C56
typical_cds_rare	Chr3	13224109	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	3	B117,B14,C87
typical_cds_rare	Chr3	13224122	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	1	B52
typical_cds_rare	Chr3	13224152	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	1	B63
typical_cds_rare	Chr3	13224165	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	3	B23,B65,D2
typical_cds_rare	Chr3	13224179	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	4	B109,B7,C43,C83
lof_cds	Chr3	13224204	GC	G	INDEL	1bp_deletion	frameshift_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	81	A1,A14,A15,A18,A20,A23,A4,B1,B100,B101,B104,B108,B110,B114,B120,B125,B133,B138,B140,B17,B21,B24,B25,B27,B3,B31,B35,B37,B4,B40,B42,B43,B45,B46,B5,B50,B58,B6,B60,B65,B68,B69,B70,B88,B89,B91,B93,B94,C20,C23,C24,C25,C27,C28,C30,C35,C38,C43,C46,C47,C48,C52,C57,C58,C6,C61,C62,C64,C7,C72,C73,C76,C82,C85,C86,D11,D3,D6,D7,D8,D9
lof_cds	Chr3	13224210	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	84	A1,A14,A15,A18,A20,A23,A4,B1,B100,B101,B104,B108,B110,B114,B115,B120,B125,B133,B138,B140,B17,B21,B24,B27,B3,B31,B35,B37,B39,B4,B40,B42,B43,B45,B46,B5,B50,B51,B56,B58,B6,B60,B65,B68,B69,B7,B89,B91,B93,B94,C20,C23,C24,C25,C27,C28,C30,C35,C38,C41,C43,C44,C46,C47,C48,C52,C58,C6,C61,C62,C64,C7,C72,C73,C76,C82,C83,C85,C86,D11,D3,D6,D7,D8
lof_cds	Chr3	13224235	A	AAT	INDEL	2bp_insertion	frameshift_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	2	B2,D10
typical_cds_rare	Chr3	13224235	A	AAT	INDEL	2bp_insertion	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	2	B2,D10
typical_cds_rare	Chr3	13224239	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	1	D11
typical_cds_rare	Chr3	13224269	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	2	B75,C57
typical_cds_rare	Chr3	13224298	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	5	A11,B113,B47,C32,C45
typical_cds_rare	Chr3	13224316	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	2	B37,B57
lof_cds	Chr3	13224358	ACT	A	INDEL	2bp_deletion	frameshift_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	6	B137,B78,B92,C18,C32,C45
typical_cds_rare	Chr3	13224438	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018371	SmilChr03G001147	131018371	rna-XM_057947101.1	3	B87,B92,C18