source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr3	13525098	CAG	C	INDEL	2bp_deletion	frameshift_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	48	A13,A18,A8,B105,B106,B11,B114,B12,B121,B133,B139,B19,B25,B29,B30,B34,B35,B52,B55,B61,B69,B72,B8,B86,B87,B88,B9,B90,B92,C11,C13,C29,C33,C36,C37,C38,C39,C41,C45,C51,C54,C65,C69,C70,C8,C80,C82,D10
typical_cds_rare	Chr3	13525109	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	3	A2,B58,D10
typical_cds_rare	Chr3	13525117	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	5	A6,B118,C27,C56,C82
typical_cds_rare	Chr3	13525127	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	4	A24,C56,D11,D3
typical_cds_rare	Chr3	13525146	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	3	A2,B58,C8
lof_cds	Chr3	13525152	GC	G	INDEL	1bp_deletion	frameshift_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	10	A10,B127,B128,B5,B63,C1,C54,C64,C66,C79
lof_cds	Chr3	13525162	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	27	A18,A19,B124,B125,B25,B35,B4,B40,B42,B61,B62,B66,B76,B8,C15,C18,C20,C27,C35,C41,C48,C59,C60,C63,D3,D6,D9
typical_cds_rare	Chr3	13526527	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	2	B8,C60
lof_cds	Chr3	13526533	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	13	B12,B134,B140,B5,B55,B71,B75,B90,B99,C1,C24,D10,D8
lof_cds	Chr3	13526553	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	11	A13,B105,B121,B20,B30,B53,B72,B8,C13,C29,C36
lof_cds	Chr3	13526571	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	5	B102,B124,B136,B61,B85
typical_cds_rare	Chr3	13526571	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	5	B102,B124,B136,B61,B85
typical_cds_rare	Chr3	13526601	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	3	B104,C55,D8
lof_cds	Chr3	13526602	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	13	A25,B120,B128,B129,B37,B5,B79,C1,C65,C71,C72,C79,C9
typical_cds_rare	Chr3	13526636	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	1	C30
typical_cds_rare	Chr3	13526640	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	4	B10,B118,B127,B98
lof_cds	Chr3	13526643	T	TTG	INDEL	2bp_insertion	frameshift_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	3	C13,C29,C70
typical_cds_rare	Chr3	13526643	T	TTG	INDEL	2bp_insertion	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	3	C13,C29,C70
lof_cds	Chr3	13526644	CCA	C	INDEL	2bp_deletion	frameshift_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	3	C13,C29,C70
typical_cds_rare	Chr3	13526644	CCA	C	INDEL	2bp_deletion	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	3	C13,C29,C70
typical_cds_rare	Chr3	13526652	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	5	A18,B8,C47,C60,C77
lof_cds	Chr3	13526656	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	4	C13,C29,C70,D8
typical_cds_rare	Chr3	13526656	TA	T	INDEL	1bp_deletion	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	4	C13,C29,C70,D8
typical_cds_rare	Chr3	13526663	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	5	A18,B8,C47,C60,C77
typical_cds_rare	Chr3	13526670	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	3	B36,B83,C59
typical_cds_rare	Chr3	13526687	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	2	A18,C77
typical_cds_rare	Chr3	13526695	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	3	B8,C47,C60
typical_cds_rare	Chr3	13526712	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	1	D10
typical_cds_rare	Chr3	13526728	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	1	C30
typical_cds_rare	Chr3	13526755	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	1	C77
typical_cds_rare	Chr3	13526823	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	1	B104
typical_cds_rare	Chr3	13526837	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	1	B111
typical_cds_rare	Chr3	13526861	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	4	B31,C10,C48,C67
typical_cds_rare	Chr3	13526863	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	1	C77
lof_cds	Chr3	13526880	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	38	A4,A9,B1,B118,B123,B127,B128,B13,B137,B140,B16,B36,B37,B5,B63,B64,B70,B71,B75,B92,B95,B98,B99,C1,C15,C18,C24,C54,C55,C59,C60,C71,C75,C77,C79,C9,D10,D8
typical_cds_rare	Chr3	13526890	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	1	B132
lof_cds	Chr3	13526918	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	5	A24,B117,B46,C61,D3
typical_cds_rare	Chr3	13526918	TC	T	INDEL	1bp_deletion	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	5	A24,B117,B46,C61,D3
typical_cds_rare	Chr3	13526934	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	1	B122
lof_cds	Chr3	13526946	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	17	A8,B11,B114,B12,B133,B52,B55,B88,B9,B90,B92,C37,C41,C54,C8,C81,C82
typical_cds_rare	Chr3	13532512	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	2	B123,B99
lof_cds	Chr3	13532517	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	19	B135,B31,B35,B46,B50,B6,B60,B93,C10,C19,C2,C21,C48,C58,C61,C64,C66,C67,C83
typical_cds_rare	Chr3	13532522	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	1	B22
typical_cds_rare	Chr3	13532581	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	1	D11
lof_cds	Chr3	13532619	C	CAT	INDEL	2bp_insertion	stop_gained,frameshift_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	5	B24,B53,B70,B81,C55
typical_cds_rare	Chr3	13532619	C	CAT	INDEL	2bp_insertion	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	5	B24,B53,B70,B81,C55
typical_cds_rare	Chr3	13532620	AG	*	INDEL	1bp_deletion	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	3	A10,B48,D5
lof_cds	Chr3	13532629	C	CTA	INDEL	2bp_insertion	frameshift_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	10	A11,A9,B1,B11,B14,B15,B85,B99,C85,C87
lof_cds	Chr3	13532631	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	1	B65
typical_cds_rare	Chr3	13532631	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	1	B65
typical_cds_rare	Chr3	13532650	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	1	B28
lof_cds	Chr3	13532666	GGT	G	INDEL	2bp_deletion	frameshift_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	7	B128,B5,B63,B95,C54,C79,C9
typical_cds_rare	Chr3	13532669	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	2	B104,B131
typical_cds_rare	Chr3	13532687	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	1	C82
typical_cds_rare	Chr3	13532716	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	4	A11,B1,C42,D8
lof_cds	Chr3	13532719	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	12	A4,B112,B133,B28,B64,B73,B95,C24,C25,C32,C42,C68
typical_cds_rare	Chr3	13532732	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	1	B101
lof_cds	Chr3	13532752	GAA	G	INDEL	2bp_deletion	frameshift_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	4	B3,B41,B54,C3
typical_cds_rare	Chr3	13532752	GAA	G	INDEL	2bp_deletion	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	4	B3,B41,B54,C3
typical_cds_rare	Chr3	13532755	GGT	G	INDEL	2bp_deletion	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	4	B3,B41,B54,C3
typical_cds_rare	Chr3	13535806	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	3	B117,C61,D3
typical_cds_rare	Chr3	13535813	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	2	B36,C59
typical_cds_rare	Chr3	13535851	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	1	C71
typical_cds_rare	Chr3	13535858	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	1	B101
typical_cds_rare	Chr3	13535925	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	2	A18,C77
lof_cds	Chr3	13535926	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	16	A8,B114,B12,B133,B25,B52,B88,B9,B90,B92,C37,C41,C54,C8,C81,C82
lof_cds	Chr3	13535936	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	20	B1,B11,B135,B14,B31,B35,B6,B60,B93,C10,C19,C2,C21,C48,C58,C61,C64,C67,C83,C87
lof_cds	Chr3	13536178	G	GAA	INDEL	2bp_insertion	frameshift_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	2	C10,C83
typical_cds_rare	Chr3	13536178	G	GAA	INDEL	2bp_insertion	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	2	C10,C83
lof_cds	Chr3	13536180	G	GCT	INDEL	2bp_insertion	frameshift_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	2	B24,C77
typical_cds_rare	Chr3	13536180	G	GCT	INDEL	2bp_insertion	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	2	B24,C77
lof_cds	Chr3	13536182	GTA	G	INDEL	2bp_deletion	frameshift_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	2	B24,C77
typical_cds_rare	Chr3	13536182	GTA	G	INDEL	2bp_deletion	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	2	B24,C77
lof_cds	Chr3	13536185	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	2	C10,C83
typical_cds_rare	Chr3	13536185	AG	A	INDEL	1bp_deletion	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	2	C10,C83
typical_cds_rare	Chr3	13536283	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	4	A11,B15,C85,C87
typical_cds_rare	Chr3	13536291	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	1	B104
typical_cds_rare	Chr3	13536349	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	2	A9,C71
lof_cds	Chr3	13536484	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	2	B93,C48
typical_cds_rare	Chr3	13536484	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	2	B93,C48
typical_cds_rare	Chr3	13536487	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	2	C55,D8
typical_cds_rare	Chr3	13536488	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	1	C48
typical_cds_rare	Chr3	13536686	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	5	A11,A5,B98,C30,C32
lof_cds	Chr3	13536764	A	ATC	INDEL	2bp_insertion	frameshift_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	9	B100,B106,B110,B115,B122,B27,B4,B69,C76
typical_cds_rare	Chr3	13536881	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	1	B104
typical_cds_rare	Chr3	13536882	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	4	B5,C27,C40,C73
typical_cds_rare	Chr3	13536962	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	2	A9,C71
lof_cds	Chr3	13536963	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	8	A18,B110,B39,B43,B53,B80,C50,D6
lof_cds	Chr3	13536976	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	5	B102,B131,B2,B74,C2
typical_cds_rare	Chr3	13536976	AG	A	INDEL	1bp_deletion	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	5	B102,B131,B2,B74,C2
typical_cds_rare	Chr3	13536983	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	2	C55,D8
typical_cds_rare	Chr3	13537016	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018389	SmilChr03G001177	131018389	rna-XM_057947117.1	1	C12