source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr3	16006326	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	1	C12
typical_cds_rare	Chr3	16006352	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	2	C12,C60
typical_cds_rare	Chr3	16006368	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	1	D11
lof_cds	Chr3	16006372	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	1	C12
typical_cds_rare	Chr3	16006372	GT	G	INDEL	1bp_deletion	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	1	C12
typical_cds_rare	Chr3	16006509	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	5	B130,B3,C2,C41,C87
typical_cds_rare	Chr3	16006536	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	3	B130,C41,C87
typical_cds_rare	Chr3	16006541	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	2	B125,C73
lof_cds	Chr3	16006573	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	1	B110
typical_cds_rare	Chr3	16006573	TC	T	INDEL	1bp_deletion	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	1	B110
typical_cds_rare	Chr3	16006656	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	3	B23,B51,B59
typical_cds_rare	Chr3	16006671	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	1	C43
typical_cds_rare	Chr3	16006698	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	1	B109
typical_cds_rare	Chr3	16006739	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	1	C28
typical_cds_rare	Chr3	16006878	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	4	B5,B84,C61,C79
lof_cds	Chr3	16007074	CAA	C	INDEL	2bp_deletion	frameshift_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	55	A11,A13,A18,A22,B10,B108,B109,B115,B125,B128,B130,B131,B133,B19,B21,B22,B23,B28,B36,B47,B5,B53,B57,B59,B66,B8,B9,B93,B94,B95,B97,B99,C13,C14,C15,C2,C26,C27,C28,C31,C32,C36,C4,C41,C47,C48,C49,C57,C58,C59,C60,C63,C67,C68,D5
typical_cds_rare	Chr3	16007081	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	1	B107
typical_cds_rare	Chr3	16007085	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	1	B58
typical_cds_rare	Chr3	16007112	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	1	B71
lof_cds	Chr3	16007159	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	52	A11,A13,A18,A22,B10,B103,B108,B110,B115,B125,B128,B130,B131,B133,B17,B19,B21,B22,B23,B28,B47,B5,B53,B57,B58,B59,B63,B66,B8,B83,B9,B93,B94,B95,B99,C13,C14,C15,C2,C24,C26,C28,C31,C32,C48,C49,C56,C57,C58,C59,C63,C67
lof_cds	Chr3	16007161	CGT	C	INDEL	2bp_deletion	frameshift_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	45	A11,A13,A18,A22,B10,B103,B108,B115,B125,B128,B130,B131,B133,B19,B21,B22,B23,B28,B47,B53,B57,B59,B63,B66,B8,B83,B93,B94,B95,B99,C14,C15,C2,C26,C28,C31,C32,C48,C49,C56,C57,C58,C59,C63,C67
lof_cds	Chr3	16007168	T	TAA	INDEL	2bp_insertion	frameshift_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	47	A10,A4,A6,A8,B104,B106,B110,B113,B118,B124,B132,B17,B2,B44,B45,B49,B5,B58,B6,B60,B61,B63,B67,B71,B72,B84,B87,B9,B92,C13,C16,C22,C24,C25,C3,C35,C47,C6,C68,C7,C72,C78,C79,C80,C84,D5,D9
lof_cds	Chr3	16007170	CCA	C	INDEL	2bp_deletion	frameshift_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	47	A10,A4,A6,A8,B104,B106,B110,B113,B118,B124,B132,B17,B2,B44,B45,B49,B5,B58,B6,B60,B61,B63,B67,B71,B72,B84,B87,B9,B92,C13,C16,C22,C24,C25,C3,C35,C47,C6,C68,C7,C72,C78,C79,C80,C84,D5,D9
typical_cds_rare	Chr3	16007210	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	1	C68
lof_cds	Chr3	16007304	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	5	B2,B74,C64,C80,C84
typical_cds_rare	Chr3	16007304	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	5	B2,B74,C64,C80,C84
typical_cds_rare	Chr3	16007565	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	3	B73,C12,C86
typical_cds_rare	Chr3	16007625	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	2	B93,C61
typical_cds_rare	Chr3	16008121	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	2	B93,C61
typical_cds_rare	Chr3	16008147	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	2	B93,C61
typical_cds_rare	Chr3	16008285	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	5	B73,C12,C19,C57,C86
typical_cds_rare	Chr3	16008318	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	1	B118
typical_cds_rare	Chr3	16008321	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	1	B118
typical_cds_rare	Chr3	16008350	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	2	B68,C48
typical_cds_rare	Chr3	16008362	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	3	B20,B72,C46
lof_cds	Chr3	16008414	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	24	A18,A20,A8,B103,B117,B118,B33,B37,B39,B40,B7,B71,B80,B84,B91,B97,C14,C27,C29,C62,C72,C82,D2,D3
typical_cds_rare	Chr3	16008423	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	4	B108,B126,B97,C73
lof_cds	Chr3	16008441	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	2	B68,C48
typical_cds_rare	Chr3	16008441	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	2	B68,C48
typical_cds_rare	Chr3	16008450	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	4	B125,B128,B27,B77
lof_cds	Chr3	16008461	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	17	A18,A20,A8,B103,B2,B33,B37,B39,B40,B7,B71,B91,C14,C62,C72,C82,D2
typical_cds_rare	Chr3	16008526	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	1	A24
typical_cds_rare	Chr3	16008540	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	2	B2,B37
typical_cds_rare	Chr3	16008551	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	2	B2,B37
typical_cds_rare	Chr3	16008557	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	2	B2,B37
typical_cds_rare	Chr3	16008601	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	1	B27
typical_cds_rare	Chr3	16008639	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	5	A13,A24,B30,B4,C75
typical_cds_rare	Chr3	16008761	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	1	B111
typical_cds_rare	Chr3	16008863	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	2	B126,B33
typical_cds_rare	Chr3	16008881	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	2	A5,B29
typical_cds_rare	Chr3	16008893	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	3	B29,B67,C50
typical_cds_rare	Chr3	16008902	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	1	C48
typical_cds_rare	Chr3	16008964	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	4	A23,B63,B83,C54
typical_cds_rare	Chr3	16009081	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	1	B24
typical_cds_rare	Chr3	16009118	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	4	B115,B26,C45,C48
typical_cds_rare	Chr3	16009155	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	4	A16,B125,B24,C41
typical_cds_rare	Chr3	16009173	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	5	B26,B64,B76,C58,D8
lof_cds	Chr3	16009189	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	4	B73,C19,C57,C86
typical_cds_rare	Chr3	16009189	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	4	B73,C19,C57,C86
typical_cds_rare	Chr3	16009254	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	5	B31,C54,C64,C66,C87
lof_cds	Chr3	16009278	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	11	B122,B25,B38,B72,B78,B9,B97,C22,C59,C74,C84
typical_cds_rare	Chr3	16009327	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	2	C30,C47
typical_cds_rare	Chr3	16009403	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	1	C38
typical_cds_rare	Chr3	16009425	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	1	B53
lof_cds	Chr3	16009436	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	6	A25,B130,B76,C18,C27,D1
typical_cds_rare	Chr3	16009444	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	1	C60
typical_cds_rare	Chr3	16009506	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	2	C58,C85
typical_cds_rare	Chr3	16009513	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	3	B125,C20,C41
typical_cds_rare	Chr3	16009528	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	5	B105,B47,C23,C51,C68
typical_cds_rare	Chr3	16009536	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	1	C38
lof_cds	Chr3	16009545	AGG	A	INDEL	2bp_deletion	frameshift_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	19	A18,A8,B128,B19,B20,B32,B51,B62,B78,B94,B99,C22,C24,C25,C35,C46,C72,C87,D1
typical_cds_rare	Chr3	16009558	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	1	B74
typical_cds_rare	Chr3	16009559	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	3	B131,B84,C82
typical_cds_rare	Chr3	16009589	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	3	B47,C23,C68
typical_cds_rare	Chr3	16009595	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	5	A23,B61,B63,B83,C54
typical_cds_rare	Chr3	16009602	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	2	B47,C68
typical_cds_rare	Chr3	16009603	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	2	B47,C68
typical_cds_rare	Chr3	16009739	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	2	B68,C48
typical_cds_rare	Chr3	16009751	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	3	B32,B6,C63
lof_cds	Chr3	16009800	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	1	C37
typical_cds_rare	Chr3	16009800	T	TA	INDEL	1bp_insertion	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	1	C37
lof_cds	Chr3	16009803	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	71	A10,A13,A16,A25,A4,A5,A8,A9,B102,B107,B109,B11,B112,B114,B118,B12,B120,B124,B129,B13,B130,B134,B136,B138,B25,B35,B4,B41,B45,B49,B5,B50,B53,B59,B60,B63,B64,B68,B7,B77,B8,B81,B82,B83,B88,B90,B92,B97,C12,C17,C21,C26,C27,C35,C36,C4,C43,C45,C46,C53,C70,C78,C81,C83,C85,C9,D1,D10,D11,D2,D7
lof_cds	Chr3	16009812	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	39	A20,A21,A3,A9,B107,B113,B118,B122,B123,B13,B27,B28,B32,B4,B44,B5,B52,B57,B62,B63,B7,B70,B75,B76,B85,B99,C18,C27,C36,C41,C44,C47,C67,C7,C73,C80,C83,C87,D5
lof_cds	Chr3	16009821	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	1	C41
typical_cds_rare	Chr3	16009821	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017846	SmilChr03G001366	131017846	rna-XM_057946587.1	1	C41