source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr3	18652825	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	23	A13,A14,A24,B103,B128,B138,B17,B32,B42,B43,B46,B50,B89,B97,C13,C16,C31,C54,C55,C57,C73,C84,D3
lof_cds	Chr3	18652868	T	TGA	INDEL	2bp_insertion	frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	4	B127,B15,B36,B43
typical_cds_rare	Chr3	18652868	T	TGA	INDEL	2bp_insertion	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	4	B127,B15,B36,B43
lof_cds	Chr3	18652883	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	18	B118,B127,B13,B15,B27,B29,B31,B35,B36,B43,B71,B77,B83,C26,C5,C59,C78,D9
typical_cds_rare	Chr3	18652931	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	1	C21
lof_cds	Chr3	18653003	A	ATG	INDEL	2bp_insertion	frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	1	C51
typical_cds_rare	Chr3	18653003	A	ATG	INDEL	2bp_insertion	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	1	C51
typical_cds_rare	Chr3	18653051	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	2	B35,C48
lof_cds	Chr3	18653064	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	32	A1,A20,A7,A9,B102,B105,B112,B114,B13,B131,B132,B138,B2,B33,B46,B48,B69,B7,B75,B80,B85,C1,C12,C15,C23,C39,C46,C52,C54,C60,C79,C82
typical_cds_rare	Chr3	18653163	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	1	C71
typical_cds_rare	Chr3	18653181	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	2	B75,D11
typical_cds_rare	Chr3	18653199	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	3	B118,B13,C58
typical_cds_rare	Chr3	18653203	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	1	B75
lof_cds	Chr3	18653204	CTA	C	INDEL	2bp_deletion	frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	25	A1,A10,A20,B105,B108,B112,B114,B132,B138,B2,B46,B48,B69,B7,B75,B85,B91,C1,C12,C39,C46,C52,C54,C79,C82
typical_cds_rare	Chr3	18653313	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	1	B60
lof_cds	Chr3	18653362	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	8	A23,B27,B71,B77,B9,B99,C38,C78
typical_cds_rare	Chr3	18653414	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	1	B104
lof_cds	Chr3	18653432	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	2	B102,B13
typical_cds_rare	Chr3	18653432	AG	A	INDEL	1bp_deletion	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	2	B102,B13
lof_cds	Chr3	18653435	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	2	B102,B13
typical_cds_rare	Chr3	18653435	AC	A	INDEL	1bp_deletion	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	2	B102,B13
typical_cds_rare	Chr3	18653438	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	5	A23,A4,B71,C38,C78
typical_cds_rare	Chr3	18653465	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	2	B102,B13
typical_cds_rare	Chr3	18653506	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	1	A4
typical_cds_rare	Chr3	18653617	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	5	A6,B109,C13,C21,C77
typical_cds_rare	Chr3	18653644	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	2	B102,B13
typical_cds_rare	Chr3	18653753	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	5	A2,A6,C21,C72,C77
lof_cds	Chr3	18653780	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	1	B40
typical_cds_rare	Chr3	18653780	TC	T	INDEL	1bp_deletion	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	1	B40
typical_cds_rare	Chr3	18653814	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	2	B104,B108
typical_cds_rare	Chr3	18653882	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	1	B102
typical_cds_rare	Chr3	18653900	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	1	B46
typical_cds_rare	Chr3	18653948	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	4	B102,B124,B18,B61
typical_cds_rare	Chr3	18653967	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	2	B102,B13
typical_cds_rare	Chr3	18654120	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	4	A14,A24,C31,C55
lof_cds	Chr3	18654144	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	46	A10,A11,A16,A18,A2,A3,B106,B11,B110,B111,B117,B126,B127,B137,B15,B19,B30,B33,B36,B41,B42,B43,B52,B54,B64,B68,B84,B86,C18,C19,C2,C30,C35,C41,C45,C7,C72,C75,C76,C80,C81,C84,C9,D11,D2,D5
typical_cds_rare	Chr3	18654160	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	5	B140,B22,B23,B24,D1
lof_cds	Chr3	18654162	C	CAA	INDEL	2bp_insertion	frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	5	A14,A24,B9,B97,C57
typical_cds_rare	Chr3	18654162	C	CAA	INDEL	2bp_insertion	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	5	A14,A24,B9,B97,C57
typical_cds_rare	Chr3	18654173	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	4	A14,A24,B97,C57
lof_cds	Chr3	18654177	A	AGG	INDEL	2bp_insertion	frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	69	A10,A2,A25,A3,A4,A8,B102,B103,B104,B106,B11,B113,B118,B121,B123,B124,B126,B127,B15,B18,B19,B27,B30,B33,B35,B36,B37,B40,B41,B42,B46,B52,B61,B63,B64,B68,B71,B83,B84,B86,B9,B94,C19,C20,C25,C27,C30,C35,C38,C45,C47,C48,C5,C51,C53,C58,C59,C62,C64,C7,C71,C76,C78,C8,C81,C82,C84,D5,D9
lof_cds	Chr3	18654323	TAC	T	INDEL	2bp_deletion	frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	1	C82
typical_cds_rare	Chr3	18654323	TAC	T	INDEL	2bp_deletion	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	1	C82
typical_cds_rare	Chr3	18654394	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	1	B74
lof_cds	Chr3	18654403	TAG	T	INDEL	2bp_deletion	frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	15	A9,B101,B128,B13,B135,B23,B58,B77,C15,C34,C4,C49,C65,C70,D2
lof_cds	Chr3	18654406	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	14	A9,B101,B128,B13,B135,B23,B58,C15,C34,C4,C49,C65,C70,D2
typical_cds_rare	Chr3	18654465	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	3	A25,B110,C9
typical_cds_rare	Chr3	18654491	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	2	B18,B85
lof_cds	Chr3	18654502	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	1	B109
typical_cds_rare	Chr3	18654502	A	AT	INDEL	1bp_insertion	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	1	B109
lof_cds	Chr3	18654634	ATT	A	INDEL	2bp_deletion	frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	55	A2,A24,A3,A5,B103,B11,B111,B112,B12,B122,B124,B126,B133,B135,B136,B137,B139,B15,B17,B21,B28,B33,B37,B41,B48,B49,B5,B50,B54,B62,B64,B7,B76,B79,B86,B87,B90,B97,C17,C28,C30,C33,C35,C40,C43,C44,C45,C56,C68,C72,C75,C77,C81,C84,D7
lof_cds	Chr3	18654638	G	GAT	INDEL	2bp_insertion	frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	49	A2,A3,A5,B11,B111,B112,B12,B122,B124,B126,B133,B135,B136,B137,B139,B15,B17,B21,B28,B33,B37,B41,B48,B49,B5,B54,B62,B64,B7,B73,B76,B79,B86,B87,B90,C17,C28,C30,C33,C35,C40,C43,C44,C45,C72,C75,C77,C81,C84
lof_cds	Chr3	18654641	C	CG	INDEL	1bp_insertion	frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	51	A11,A2,A3,A5,B11,B111,B112,B12,B122,B124,B126,B133,B135,B136,B137,B139,B15,B17,B21,B28,B33,B37,B41,B48,B49,B5,B54,B62,B64,B7,B73,B76,B79,B86,B87,B90,C17,C28,C30,C33,C34,C35,C40,C43,C44,C45,C72,C75,C77,C81,C84
lof_cds	Chr3	18654645	C	CT	INDEL	1bp_insertion	stop_gained,frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	4	B95,C56,C6,C68
typical_cds_rare	Chr3	18654645	C	CT	INDEL	1bp_insertion	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	4	B95,C56,C6,C68
lof_cds	Chr3	18654684	G	GC	INDEL	1bp_insertion	frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	41	A19,A20,A21,A7,B104,B114,B119,B120,B14,B16,B23,B24,B32,B33,B38,B39,B45,B46,B47,B53,B55,B56,B66,B77,B80,B88,B92,B94,C11,C39,C40,C42,C46,C58,C60,C69,C86,C87,D1,D11,D3
lof_cds	Chr3	18654688	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	37	A19,A20,A21,A7,B104,B114,B119,B120,B14,B16,B24,B32,B33,B38,B39,B45,B47,B55,B56,B66,B77,B80,B88,B92,B94,C11,C39,C40,C42,C46,C58,C69,C86,C87,D1,D11,D3
lof_cds	Chr3	18654691	C	CG	INDEL	1bp_insertion	frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	41	A19,A20,A21,A7,B104,B114,B119,B120,B14,B16,B23,B24,B32,B33,B38,B39,B45,B46,B47,B53,B55,B56,B66,B77,B80,B88,B92,B94,C11,C39,C40,C42,C46,C58,C60,C69,C86,C87,D1,D11,D3
typical_cds_rare	Chr3	18654718	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	1	B35
typical_cds_rare	Chr3	18654726	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	3	B108,B18,B61
typical_cds_rare	Chr3	18654740	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	1	C33
lof_cds	Chr3	18654770	CTG	C	INDEL	2bp_deletion	frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	2	B108,B18
typical_cds_rare	Chr3	18654770	CTG	C	INDEL	2bp_deletion	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	2	B108,B18
typical_cds_rare	Chr3	18654780	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	1	C73
lof_cds	Chr3	18654783	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	4	B104,B29,C53,C59
typical_cds_rare	Chr3	18654783	GT	G	INDEL	1bp_deletion	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	4	B104,B29,C53,C59
typical_cds_rare	Chr3	18654800	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	1	B35
typical_cds_rare	Chr3	18654831	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	3	B39,C39,D6
lof_cds	Chr3	18654851	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	21	A10,A8,B119,B16,B18,B6,B70,B72,B75,C1,C22,C25,C39,C48,C51,C52,C62,C67,C79,C8,D5
lof_cds	Chr3	18654852	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	18	A25,B110,B121,B129,B132,B138,B2,B65,B69,B85,B91,B94,C21,C39,C46,C47,C6,C72
lof_cds	Chr3	18654856	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	22	A10,A8,B119,B16,B18,B6,B70,B72,B75,C1,C22,C25,C39,C46,C48,C51,C52,C62,C67,C79,C8,D5
lof_cds	Chr3	18654865	TTG	T	INDEL	2bp_deletion	frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	21	A10,A8,B119,B16,B18,B6,B70,B72,B75,C1,C22,C39,C46,C48,C51,C52,C62,C67,C79,C8,D5
lof_cds	Chr3	18654870	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	15	A25,B110,B129,B132,B138,B65,B69,B85,B91,C21,C39,C46,C47,C6,C72
typical_cds_rare	Chr3	18654884	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	1	B35
lof_cds	Chr3	18654902	T	TCC	INDEL	2bp_insertion	frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	12	A9,B23,B29,B45,B53,B69,C10,C25,C49,C59,D2,D9
lof_cds	Chr3	18654930	G	GT	INDEL	1bp_insertion	frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	7	A1,A10,B105,B114,B138,B2,C1
lof_cds	Chr3	18654939	GGA	G	INDEL	2bp_deletion	frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	7	A1,A10,B105,B114,B138,B2,C1
lof_cds	Chr3	18654987	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	34	A20,A8,B113,B119,B12,B132,B16,B18,B35,B48,B6,B65,B70,B72,B75,B85,B91,C21,C23,C25,C39,C4,C46,C47,C48,C49,C51,C52,C67,C70,C79,C8,C9,D8
lof_cds	Chr3	18655019	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	57	A10,A11,A16,A2,A22,A3,A4,A5,B101,B102,B104,B106,B118,B126,B13,B130,B134,B136,B137,B18,B23,B26,B27,B33,B36,B41,B42,B43,B45,B53,B58,B65,B69,B74,B75,B77,B85,B86,C10,C15,C19,C2,C30,C4,C42,C45,C49,C53,C58,C63,C74,C81,C84,D11,D2,D5,D9
typical_cds_rare	Chr3	18655035	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	4	B16,C21,C70,C72
lof_cds	Chr3	18655040	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	3	B129,B138,C1
typical_cds_rare	Chr3	18655040	AT	A	INDEL	1bp_deletion	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	3	B129,B138,C1
typical_cds_rare	Chr3	18655053	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	2	A5,B126
lof_cds	Chr3	18655090	T	TCG	INDEL	2bp_insertion	frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	21	A1,A7,B102,B114,B13,B137,B23,B25,B45,B47,B65,B78,C18,C27,C29,C33,C46,C47,C49,C72,C9
lof_cds	Chr3	18655104	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	16	A23,A25,B121,B129,B130,B2,B29,B37,B81,B84,B94,C20,C45,C7,C78,C9
typical_cds_rare	Chr3	18655188	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131017985	SmilChr03G001521	131017985	rna-XM_057946748.1	4	C38,C48,C71,D9