source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr3	24937200	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	3	B60,B69,B81
typical_cds_rare	Chr3	24937236	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	3	B36,B74,B90
lof_cds	Chr3	24937287	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	12	B103,B30,B36,B54,B86,C17,C30,C35,C5,C7,C75,C76
typical_cds_rare	Chr3	24937292	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	2	B36,B90
lof_cds	Chr3	24937299	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	5	B117,B131,B133,B72,C11
typical_cds_rare	Chr3	24937299	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	5	B117,B131,B133,B72,C11
typical_cds_rare	Chr3	24937303	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	5	B114,B134,B72,C2,C60
typical_cds_rare	Chr3	24937312	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	4	A16,B101,B39,C13
typical_cds_rare	Chr3	24937331	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	2	A16,B39
typical_cds_rare	Chr3	24937346	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	3	B131,B133,B72
lof_cds	Chr3	24937381	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	12	A8,B126,B15,B68,B94,C13,C16,C25,C3,C42,C48,C83
typical_cds_rare	Chr3	24937401	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	1	C3
lof_cds	Chr3	24937405	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	153	A10,A13,A14,A18,A2,A23,A25,A3,A4,A5,A6,A8,B100,B101,B105,B106,B107,B108,B11,B111,B112,B113,B12,B120,B122,B124,B126,B127,B128,B13,B130,B131,B132,B135,B136,B138,B139,B15,B16,B18,B2,B23,B24,B25,B26,B27,B28,B3,B31,B32,B33,B35,B37,B38,B39,B44,B48,B5,B52,B54,B55,B59,B6,B61,B62,B63,B64,B65,B68,B69,B70,B71,B72,B73,B74,B77,B78,B79,B8,B82,B83,B84,B87,B88,B9,B90,B92,B93,B96,B97,C12,C14,C15,C16,C18,C2,C21,C22,C25,C26,C27,C3,C36,C37,C38,C39,C4,C40,C43,C44,C45,C46,C47,C48,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C61,C62,C63,C64,C65,C66,C67,C68,C69,C71,C74,C75,C79,C80,C81,C82,C83,C84,C87,C9,D1,D10,D11,D2,D3,D6,D7,D8,D9
typical_cds_rare	Chr3	24937417	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	2	B2,B71
typical_cds_rare	Chr3	24937423	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	2	B2,C68
lof_cds	Chr3	24937433	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	2	B30,B49
typical_cds_rare	Chr3	24937433	A	AG	INDEL	1bp_insertion	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	2	B30,B49
typical_cds_rare	Chr3	24937482	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	4	B28,B30,C32,C68
lof_cds	Chr3	24937512	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	16	A11,B1,B12,B122,B16,B17,B30,B49,B67,B7,B77,B78,B80,B98,C5,C62
typical_cds_rare	Chr3	24937516	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	3	B18,B51,C60
lof_cds	Chr3	24937536	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	2	A10,B22
typical_cds_rare	Chr3	24937536	AT	A	INDEL	1bp_deletion	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	2	A10,B22
typical_cds_rare	Chr3	24937542	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	4	A10,B2,B69,B71
typical_cds_rare	Chr3	24937543	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	2	B2,B71
lof_cds	Chr3	24937548	A	AAC	INDEL	2bp_insertion	frameshift_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	1	D3
typical_cds_rare	Chr3	24937548	A	AAC	INDEL	2bp_insertion	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	1	D3
lof_cds	Chr3	24937549	A	ACC	INDEL	2bp_insertion	frameshift_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	37	A22,A24,A7,B1,B104,B111,B117,B12,B122,B134,B137,B138,B16,B28,B30,B38,B39,B7,B70,B74,B77,B79,B80,B82,B86,B93,C29,C3,C5,C55,C58,C62,C73,C78,C82,C86,D11
lof_cds	Chr3	24937550	GTA	G	INDEL	2bp_deletion	frameshift_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	36	A22,A24,A7,B1,B104,B111,B117,B12,B122,B134,B137,B138,B16,B28,B30,B38,B39,B7,B70,B74,B77,B80,B82,B86,B93,C29,C3,C5,C58,C62,C73,C78,C82,C86,D11,D3
typical_cds_rare	Chr3	24937553	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	4	A6,B67,C46,C53
typical_cds_rare	Chr3	24937579	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	2	B2,B71
typical_cds_rare	Chr3	24937607	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	4	B39,B80,C48,C78
lof_cds	Chr3	24937621	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	1	B100
typical_cds_rare	Chr3	24937621	T	TA	INDEL	1bp_insertion	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	1	B100
typical_cds_rare	Chr3	24937627	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	2	B75,D11
typical_cds_rare	Chr3	24937633	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	5	B69,B92,C21,C4,D9
lof_cds	Chr3	24937642	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	166	A1,A10,A13,A14,A15,A16,A18,A19,A2,A20,A21,A23,A25,A3,A4,A5,A6,A8,B10,B101,B105,B108,B109,B11,B110,B111,B112,B113,B115,B117,B12,B120,B122,B124,B126,B127,B128,B13,B130,B131,B133,B134,B135,B138,B139,B15,B16,B19,B2,B23,B24,B25,B26,B27,B29,B3,B31,B33,B35,B37,B40,B44,B45,B48,B49,B5,B50,B52,B53,B54,B55,B56,B59,B6,B61,B62,B63,B64,B65,B66,B68,B69,B70,B71,B72,B73,B76,B77,B78,B79,B82,B83,B84,B87,B88,B92,B93,B96,B97,C11,C12,C13,C14,C16,C18,C2,C22,C24,C25,C26,C27,C3,C33,C34,C36,C37,C38,C39,C4,C40,C42,C43,C44,C45,C46,C47,C48,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C61,C62,C63,C64,C65,C66,C67,C69,C71,C72,C74,C75,C76,C79,C80,C83,C84,C87,C9,D1,D10,D2,D3,D5,D6,D7,D8,D9
lof_cds	Chr3	24937671	TCG	T	INDEL	2bp_deletion	frameshift_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	1	B22
typical_cds_rare	Chr3	24937671	TCG	T	INDEL	2bp_deletion	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	1	B22
typical_cds_rare	Chr3	24937679	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	2	B73,C13
lof_cds	Chr3	24937731	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	1	C29
typical_cds_rare	Chr3	24937731	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	1	C29
typical_cds_rare	Chr3	24937758	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	1	B107
typical_cds_rare	Chr3	24937761	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	2	B2,B71
typical_cds_rare	Chr3	24937831	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	2	B40,C18
typical_cds_rare	Chr3	24937848	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	5	B40,B81,B87,C18,C59
typical_cds_rare	Chr3	24937856	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	5	B40,B81,B87,C18,C59
typical_cds_rare	Chr3	24937873	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	2	B75,D11
typical_cds_rare	Chr3	24937875	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	5	A1,B129,B132,B2,C12
typical_cds_rare	Chr3	24937882	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	3	B46,B89,C35
lof_cds	Chr3	24937890	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	3	B52,B75,B9
typical_cds_rare	Chr3	24937890	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	3	B52,B75,B9
typical_cds_rare	Chr3	24937920	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	1	B34
typical_cds_rare	Chr3	24937947	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	4	B127,B138,B37,B92
lof_cds	Chr3	24937966	ATG	A	INDEL	2bp_deletion	frameshift_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	28	B1,B114,B115,B122,B126,B127,B138,B139,B17,B20,B25,B33,B34,B37,B59,B64,B73,B76,B84,B88,B98,C3,C54,C72,C80,C82,C84,D2
lof_cds	Chr3	24937969	A	AAG	INDEL	2bp_insertion	frameshift_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	28	B1,B114,B115,B122,B126,B127,B138,B139,B17,B20,B25,B33,B34,B37,B59,B64,B73,B76,B84,B88,B98,C3,C54,C72,C80,C82,C84,D2
typical_cds_rare	Chr3	24937989	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	1	C36
typical_cds_rare	Chr3	24937996	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	2	B2,B71
typical_cds_rare	Chr3	24938026	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	1	C29
typical_cds_rare	Chr3	24938034	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	1	C29
lof_cds	Chr3	24938041	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	2	B17,B73
typical_cds_rare	Chr3	24938041	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	2	B17,B73
typical_cds_rare	Chr3	24938058	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	1	B123
typical_cds_rare	Chr3	24938082	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	5	B47,B57,B78,C33,C60
typical_cds_rare	Chr3	24938085	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	2	B60,B81
typical_cds_rare	Chr3	24938089	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018572	SmilChr03G001822	131018572	rna-XM_057947287.1	2	B13,B53