source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr3	25977295	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	1	B63
typical_cds_rare	Chr3	25977295	AT	A	INDEL	1bp_deletion	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	1	B63
typical_cds_rare	Chr3	25977301	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	1	B35
lof_cds	Chr3	25977323	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	13	A4,B100,B121,B125,B133,B134,B5,B67,B71,B77,C62,C86,C87
lof_cds	Chr3	25977327	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	13	A4,B100,B121,B125,B133,B134,B5,B67,B71,B77,C62,C86,C87
lof_cds	Chr3	25977363	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	6	B136,B17,B52,B73,C47,C54
typical_cds_rare	Chr3	25977385	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	5	B13,B33,B53,B9,C57
typical_cds_rare	Chr3	25977388	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	2	B125,C73
typical_cds_rare	Chr3	25977393	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	3	B104,B91,C57
typical_cds_rare	Chr3	25977399	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	1	B75
typical_cds_rare	Chr3	25977411	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	1	B140
lof_cds	Chr3	25977423	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	4	B1,B121,B133,B82
typical_cds_rare	Chr3	25977423	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	4	B1,B121,B133,B82
typical_cds_rare	Chr3	25977460	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	5	B1,B103,B69,B7,C76
typical_cds_rare	Chr3	25977546	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	2	A21,B66
typical_cds_rare	Chr3	25977549	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	3	B104,B91,C57
typical_cds_rare	Chr3	25977578	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	3	B104,B91,C57
typical_cds_rare	Chr3	25977579	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	1	B35
lof_cds	Chr3	25977620	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	3	B32,B91,C50
typical_cds_rare	Chr3	25977620	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	3	B32,B91,C50
typical_cds_rare	Chr3	25977664	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	1	B67
typical_cds_rare	Chr3	25977704	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	5	B58,B82,C34,C63,C67
lof_cds	Chr3	25977714	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	33	A10,B102,B103,B124,B125,B126,B128,B137,B16,B18,B29,B51,B59,B61,B65,B80,B81,B83,B85,B98,C15,C18,C2,C31,C48,C49,C50,C55,C57,C59,C61,C75,D9
typical_cds_rare	Chr3	25977742	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	1	C57
typical_cds_rare	Chr3	25977764	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	3	B35,C32,C68
typical_cds_rare	Chr3	25977850	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	5	B119,B122,B81,C57,D11
typical_cds_rare	Chr3	25977906	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	1	D10
typical_cds_rare	Chr3	25977915	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	4	B103,B69,B7,C76
typical_cds_rare	Chr3	25977916	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	1	B35
lof_cds	Chr3	25977963	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	81	A10,A11,A18,A19,A21,A22,A23,A4,A5,A7,A8,B1,B100,B103,B104,B106,B107,B109,B112,B119,B12,B123,B127,B128,B130,B132,B133,B137,B138,B139,B140,B16,B23,B3,B30,B33,B36,B42,B43,B5,B51,B53,B54,B55,B57,B62,B64,B66,B7,B71,B73,B74,B76,B79,B80,B90,B91,B92,C15,C16,C17,C2,C24,C27,C30,C31,C39,C47,C49,C5,C54,C55,C57,C6,C64,C7,C76,C79,C8,C80,C87
lof_cds	Chr3	25978004	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	138	A1,A11,A14,A16,A18,A19,A2,A23,A24,A25,A4,A5,A6,A8,B1,B10,B101,B102,B105,B106,B107,B108,B109,B110,B111,B112,B113,B115,B118,B120,B121,B124,B127,B132,B133,B138,B139,B15,B16,B19,B20,B21,B24,B25,B26,B27,B28,B3,B30,B36,B37,B38,B39,B40,B42,B44,B45,B46,B47,B50,B53,B54,B57,B62,B64,B65,B68,B74,B75,B77,B78,B79,B8,B80,B9,B90,B91,B92,B93,B94,B99,C1,C11,C12,C14,C16,C17,C18,C19,C2,C20,C22,C23,C24,C26,C27,C28,C29,C3,C30,C32,C33,C35,C38,C4,C41,C43,C44,C46,C48,C5,C54,C56,C58,C6,C65,C68,C69,C7,C71,C72,C73,C74,C75,C76,C78,C79,C8,C81,C83,C85,C86,C87,C9,D1,D2,D3,D6
lof_cds	Chr3	25978017	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	20	A11,A4,B1,B100,B121,B125,B133,B134,B33,B5,B57,B67,B68,B7,B71,B79,C48,C62,C86,C87
typical_cds_rare	Chr3	25978018	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	1	B12
typical_cds_rare	Chr3	25978037	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	1	B108
typical_cds_rare	Chr3	25978039	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	1	A20
typical_cds_rare	Chr3	25978048	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	1	B104
typical_cds_rare	Chr3	25978061	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	1	B26
typical_cds_rare	Chr3	25978085	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	2	B54,B86
typical_cds_rare	Chr3	25978088	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	2	B120,B82
typical_cds_rare	Chr3	25978196	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	1	B9
typical_cds_rare	Chr3	25978198	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	3	B42,B43,B90
lof_cds	Chr3	25978225	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	38	A10,B102,B103,B112,B124,B125,B126,B128,B134,B137,B18,B29,B51,B59,B61,B65,B70,B8,B80,B81,B83,B85,B97,B98,C15,C18,C2,C31,C48,C49,C50,C55,C57,C59,C61,C75,C79,D9
lof_cds	Chr3	25978228	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	32	A14,A23,A25,A5,A8,B107,B109,B121,B130,B138,B15,B32,B35,B36,B37,B44,B5,B63,B72,B81,B84,C34,C37,C43,C55,C60,C73,C77,C79,C84,C9,D8
typical_cds_rare	Chr3	25978276	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	1	B9
typical_cds_rare	Chr3	25978283	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	1	C43
lof_cds	Chr3	25978318	CAG	C	INDEL	2bp_deletion	frameshift_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	1	B50
typical_cds_rare	Chr3	25978318	CAG	C	INDEL	2bp_deletion	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	1	B50
lof_cds	Chr3	25978323	ACC	A	INDEL	2bp_deletion	frameshift_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	1	B50
typical_cds_rare	Chr3	25978323	ACC	A	INDEL	2bp_deletion	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	1	B50
typical_cds_rare	Chr3	25978333	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	3	B104,B91,C57
lof_cds	Chr3	25978359	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	18	A3,B100,B110,B111,B12,B139,B33,B56,B68,B7,B87,B96,B97,B98,C3,C48,C60,C71
typical_cds_rare	Chr3	25978367	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	2	B55,C25
typical_cds_rare	Chr3	25978399	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	1	B75
typical_cds_rare	Chr3	25978410	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	3	B1,B121,B133
lof_cds	Chr3	25978415	AAC	A	INDEL	2bp_deletion	frameshift_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	3	A3,B75,C22
typical_cds_rare	Chr3	25978415	AAC	A	INDEL	2bp_deletion	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	3	A3,B75,C22
typical_cds_rare	Chr3	25978439	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	5	A20,B126,B59,C34,C59
typical_cds_rare	Chr3	25978449	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	2	B13,B53
typical_cds_rare	Chr3	25978493	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	3	A3,B75,C74
typical_cds_rare	Chr3	25978502	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	2	B83,C59
lof_cds	Chr3	25978510	ATG	A	INDEL	2bp_deletion	frameshift_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	1	B42
typical_cds_rare	Chr3	25978510	ATG	A	INDEL	2bp_deletion	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	1	B42
typical_cds_rare	Chr3	25978512	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	5	B44,B58,B69,C72,C80
typical_cds_rare	Chr3	25978515	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	1	D1
typical_cds_rare	Chr3	25978522	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	1	B126
typical_cds_rare	Chr3	25978560	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	1	B54
typical_cds_rare	Chr3	25978585	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	1	B35
lof_cds	Chr3	25978642	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	3	C31,C34,C67
typical_cds_rare	Chr3	25978642	C	CA	INDEL	1bp_insertion	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	3	C31,C34,C67
typical_cds_rare	Chr3	25978667	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	5	B107,B40,B5,C87,D4
typical_cds_rare	Chr3	25978686	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018588	SmilChr03G001873	131018588	rna-XM_057947301.1	1	D11