source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr3	29168583	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	27	A11,A14,A2,A20,A21,A23,A3,A7,B108,B115,B125,B129,B130,B138,B18,B52,B59,B6,B62,B66,B70,B93,C31,C53,C55,C67,C69
typical_cds_rare	Chr3	29168586	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	3	B59,B98,D10
typical_cds_rare	Chr3	29168601	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	4	B39,B46,B6,C67
lof_cds	Chr3	29168642	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	15	A24,B107,B128,B134,B24,B37,B41,B62,B7,C11,C16,C49,C66,C69,C71
lof_cds	Chr3	29168667	CT	C	INDEL	1bp_deletion	frameshift_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	35	A1,A19,A2,A25,B113,B114,B115,B120,B121,B124,B126,B16,B26,B37,B40,B49,B6,B60,B72,B77,B78,B86,C10,C21,C33,C46,C50,C53,C56,C63,C65,C69,C73,C78,D3
lof_cds	Chr3	29168685	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	21	A10,A4,A9,B105,B109,B114,B117,B120,B3,B30,B59,B65,B85,B92,C30,C34,C54,C56,C6,C65,C77
typical_cds_rare	Chr3	29168687	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	2	B32,D10
lof_cds	Chr3	29168706	G	GAC	INDEL	2bp_insertion	frameshift_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	37	A1,A10,A16,A24,A9,B109,B120,B134,B135,B17,B24,B3,B30,B37,B41,B57,B62,B65,B67,B7,B85,B92,C16,C30,C32,C34,C49,C56,C62,C63,C68,C69,C71,C76,C79,C8,C81
lof_cds	Chr3	29168711	T	TCC	INDEL	2bp_insertion	frameshift_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	126	A13,A14,A16,A18,A19,A20,A23,A25,A4,A5,A6,A7,A8,B10,B101,B103,B105,B107,B109,B110,B111,B113,B114,B118,B119,B121,B124,B125,B127,B128,B13,B131,B133,B134,B136,B137,B138,B139,B15,B16,B2,B22,B23,B24,B25,B26,B27,B3,B32,B34,B35,B36,B37,B38,B39,B40,B42,B43,B44,B45,B49,B5,B52,B54,B6,B61,B62,B63,B71,B72,B75,B77,B79,B8,B80,B81,B83,B84,B86,B87,B88,B9,B90,B91,B92,B95,B98,C14,C19,C2,C20,C22,C25,C26,C28,C29,C34,C36,C37,C39,C40,C43,C5,C50,C51,C53,C54,C55,C6,C65,C67,C70,C72,C73,C74,C77,C79,C82,C84,C85,C87,C9,D4,D6,D7,D8
typical_cds_rare	Chr3	29168730	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	2	B32,D10
typical_cds_rare	Chr3	29168759	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	4	B102,B35,C3,C74
typical_cds_rare	Chr3	29168776	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	2	B123,C30
typical_cds_rare	Chr3	29168784	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	1	B102
typical_cds_rare	Chr3	29168791	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	2	A19,C71
typical_cds_rare	Chr3	29168809	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	2	B32,D10
typical_cds_rare	Chr3	29168811	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	1	C43
typical_cds_rare	Chr3	29168819	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	1	B104
typical_cds_rare	Chr3	29168852	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	4	B80,B95,B98,C50
typical_cds_rare	Chr3	29168881	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	5	C13,C19,C26,C82,C83
typical_cds_rare	Chr3	29168895	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	1	C43
typical_cds_rare	Chr3	29168937	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	2	A4,C75
typical_cds_rare	Chr3	29168951	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	1	C30
typical_cds_rare	Chr3	29168970	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	1	C43
typical_cds_rare	Chr3	29168994	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	3	B115,B95,D4
lof_cds	Chr3	29168997	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	2	B19,C54
typical_cds_rare	Chr3	29168997	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	2	B19,C54
lof_cds	Chr3	29169004	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	8	A20,B119,B3,C24,C25,C3,C74,D8
lof_cds	Chr3	29169007	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	8	A20,B119,B3,C24,C25,C3,C74,D8
typical_cds_rare	Chr3	29169013	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	1	B21
typical_cds_rare	Chr3	29169039	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	1	B115
typical_cds_rare	Chr3	29169045	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	3	B109,B66,C78
typical_cds_rare	Chr3	29169047	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	1	B83
lof_cds	Chr3	29169054	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	18	B110,B125,B126,B135,B19,B41,B48,B55,B72,C15,C17,C27,C44,C50,C54,C62,C81,D2
lof_cds	Chr3	29169072	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	8	B134,B59,B62,B64,B71,B87,C71,C81
typical_cds_rare	Chr3	29169096	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	1	C60
typical_cds_rare	Chr3	29169135	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	2	B32,D10
typical_cds_rare	Chr3	29169147	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	1	C71
lof_cds	Chr3	29169151	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	4	B14,B35,B88,C61
typical_cds_rare	Chr3	29169151	AG	A	INDEL	1bp_deletion	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	4	B14,B35,B88,C61
typical_cds_rare	Chr3	29169157	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	2	B113,B28
lof_cds	Chr3	29169168	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	99	A1,A15,A16,A18,A19,A2,A20,A22,A25,A6,B103,B111,B113,B114,B115,B118,B12,B120,B124,B125,B126,B13,B130,B131,B134,B135,B137,B138,B139,B14,B16,B2,B21,B26,B3,B31,B40,B49,B54,B6,B67,B70,B71,B72,B74,B77,B78,B79,B86,B88,B89,B9,B90,B92,B98,B99,C10,C11,C12,C15,C2,C21,C22,C26,C27,C3,C30,C35,C40,C43,C46,C48,C50,C52,C53,C55,C56,C60,C61,C62,C63,C65,C67,C69,C7,C71,C72,C73,C78,C79,C8,C80,C83,C84,C85,C86,C87,C9,D3
lof_cds	Chr3	29169182	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	1	B88
typical_cds_rare	Chr3	29169182	AC	A	INDEL	1bp_deletion	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	1	B88
typical_cds_rare	Chr3	29169206	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	3	B2,C18,C87
lof_cds	Chr3	29169216	GCA	G	INDEL	2bp_deletion	frameshift_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	10	A8,A9,B125,B24,B34,B58,C19,C27,C4,C9
typical_cds_rare	Chr3	29169231	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	3	B75,C16,D5
lof_cds	Chr3	29169240	T	TAA	INDEL	2bp_insertion	frameshift_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	12	A16,A20,A7,B102,B113,B43,B5,B64,C38,C6,C77,C81
typical_cds_rare	Chr3	29169267	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	5	B87,B96,C10,C8,C84
typical_cds_rare	Chr3	29169273	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	5	B38,B45,C2,C64,C7
typical_cds_rare	Chr3	29169318	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	4	B80,B95,B98,C50
typical_cds_rare	Chr3	29169319	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	5	B15,B44,B66,B87,C8
lof_cds	Chr3	29169339	GGC	G	INDEL	2bp_deletion	frameshift_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	2	B102,C74
typical_cds_rare	Chr3	29169339	GGC	G	INDEL	2bp_deletion	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	2	B102,C74
lof_cds	Chr3	29169344	A	ACT	INDEL	2bp_insertion	stop_gained,frameshift_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	3	B102,C24,C74
typical_cds_rare	Chr3	29169344	A	ACT	INDEL	2bp_insertion	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	3	B102,C24,C74
typical_cds_rare	Chr3	29169352	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	5	B37,C13,C26,C82,C83
typical_cds_rare	Chr3	29169355	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	5	B133,B42,B43,B90,B92
typical_cds_rare	Chr3	29169386	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	2	B12,C25
lof_cds	Chr3	29169391	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	3	B105,C33,C42
typical_cds_rare	Chr3	29169391	TC	T	INDEL	1bp_deletion	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	3	B105,C33,C42
typical_cds_rare	Chr3	29169435	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	4	B80,B95,B98,C50
typical_cds_rare	Chr3	29169441	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	3	A3,A7,C83
lof_cds	Chr3	29169449	A	AC	INDEL	1bp_insertion	frameshift_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	44	A10,A13,A18,A19,A23,B101,B119,B136,B138,B14,B21,B22,B31,B37,B39,B4,B46,B49,B54,B55,B60,B63,B7,B71,B74,B76,B77,B86,B91,B97,C13,C21,C24,C27,C30,C5,C61,C67,C75,C84,C87,C9,D10,D5
typical_cds_rare	Chr3	29169465	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	4	A7,A8,B3,C22
typical_cds_rare	Chr3	29169484	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	4	A8,B12,B3,C22
typical_cds_rare	Chr3	29169492	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	3	A8,B3,C22
typical_cds_rare	Chr3	29169695	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	2	B74,B91
typical_cds_rare	Chr3	29169696	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	2	B74,B91
typical_cds_rare	Chr3	29169738	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	2	B74,B91
typical_cds_rare	Chr3	29169739	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	1	C11
typical_cds_rare	Chr3	29169754	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	3	B28,B79,C87
typical_cds_rare	Chr3	29169757	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	2	B74,B91
lof_cds	Chr3	29169764	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	3	B28,B79,C87
typical_cds_rare	Chr3	29169764	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	3	B28,B79,C87
typical_cds_rare	Chr3	29169768	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	3	B74,B91,C11
typical_cds_rare	Chr3	29169786	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	5	A3,B72,C34,C41,D9
lof_cds	Chr3	29169832	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	1	C87
typical_cds_rare	Chr3	29169832	T	TC	INDEL	1bp_insertion	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	1	C87
lof_cds	Chr3	29169845	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	1	B130
typical_cds_rare	Chr3	29169845	TG	T	INDEL	1bp_deletion	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	1	B130
lof_cds	Chr3	29169860	A	ACC	INDEL	2bp_insertion	frameshift_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	16	B112,B12,B20,B30,B52,B69,B73,B80,B93,C19,C38,C4,C55,C76,C78,C79
typical_cds_rare	Chr3	29169872	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	4	B80,B95,B98,C50
lof_cds	Chr3	29169888	CG	C	INDEL	1bp_deletion	frameshift_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	29	A9,B100,B134,B16,B23,B25,B27,B49,B53,B78,B85,B87,B93,B94,C10,C11,C2,C23,C3,C40,C46,C58,C63,C69,C70,C74,C8,C81,C85
lof_cds	Chr3	29169889	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	96	A14,A15,A22,A3,A7,B1,B10,B101,B103,B104,B106,B109,B111,B113,B114,B115,B122,B127,B128,B132,B135,B136,B138,B14,B15,B17,B20,B24,B28,B29,B3,B30,B32,B36,B37,B38,B4,B40,B41,B44,B47,B48,B5,B54,B56,B63,B64,B65,B7,B71,B72,B73,B80,B82,B83,B86,B9,B91,B95,B96,B99,C16,C19,C20,C24,C25,C26,C33,C34,C36,C37,C38,C4,C41,C47,C48,C49,C54,C55,C57,C59,C6,C67,C71,C75,C76,C79,C84,C87,D11,D2,D3,D5,D7,D8,D9
typical_cds_rare	Chr3	29169895	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	5	B133,B42,B43,B90,B92
typical_cds_rare	Chr3	29169897	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	3	B80,B98,C50
lof_cds	Chr3	29169913	TCC	T	INDEL	2bp_deletion	frameshift_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	54	A14,A15,A3,A7,B103,B106,B109,B114,B127,B136,B14,B15,B25,B28,B3,B32,B4,B41,B44,B47,B54,B63,B64,B65,B71,B72,B73,B79,B82,B83,B86,B9,B90,B93,C20,C30,C33,C34,C36,C37,C41,C46,C54,C57,C59,C71,C84,C87,D1,D11,D2,D7,D8,D9
lof_cds	Chr3	29169916	TCC	T	INDEL	2bp_deletion	frameshift_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	54	A14,A15,A3,A7,B103,B106,B109,B114,B127,B136,B14,B15,B25,B28,B3,B32,B4,B41,B44,B47,B54,B63,B64,B65,B71,B72,B73,B79,B82,B83,B86,B9,B90,B93,C20,C30,C33,C34,C36,C37,C41,C46,C54,C57,C59,C71,C84,C87,D1,D11,D2,D7,D8,D9
lof_cds	Chr3	29169980	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	55	A16,A19,A22,A24,A7,B107,B111,B113,B115,B128,B132,B134,B135,B138,B15,B18,B21,B24,B29,B33,B36,B37,B38,B39,B44,B5,B56,B7,B74,B83,B95,B96,B99,C11,C16,C20,C24,C25,C32,C38,C47,C49,C5,C55,C6,C64,C67,C68,C69,C71,C75,C79,C85,D3,D5
lof_cds	Chr3	29169982	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	1	B25
typical_cds_rare	Chr3	29169982	GT	G	INDEL	1bp_deletion	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	1	B25
typical_cds_rare	Chr3	29170021	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	1	B56
typical_cds_rare	Chr3	29170024	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	1	B56
lof_cds	Chr3	29170034	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	12	A20,B121,B34,B38,B39,B61,B86,B91,C36,C39,D6,D7
lof_cds	Chr3	29170039	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	79	A10,A16,A19,A21,A22,A3,A9,B100,B102,B106,B107,B109,B114,B119,B122,B127,B129,B134,B14,B15,B20,B25,B27,B28,B32,B35,B39,B40,B41,B44,B45,B48,B55,B63,B65,B67,B7,B72,B73,B78,B79,B82,B83,B85,B86,B9,B90,B93,B95,B96,B99,C10,C16,C17,C2,C27,C30,C33,C34,C36,C38,C41,C49,C52,C54,C59,C6,C62,C63,C68,C70,C71,C78,C8,C81,C87,D1,D11,D4
lof_cds	Chr3	29170216	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	9	A19,B17,B18,B33,B40,C32,C49,C5,C75
typical_cds_rare	Chr3	29170225	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	4	B22,B67,C87,D11
lof_cds	Chr3	29170228	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	55	A10,A11,A21,A4,A9,B102,B108,B117,B12,B125,B133,B134,B140,B30,B38,B4,B43,B49,B51,B53,B56,B59,B60,B66,B69,B74,B80,B82,B83,B84,B9,B90,B91,C17,C18,C22,C26,C27,C29,C30,C35,C4,C40,C41,C42,C45,C48,C55,C6,C60,C71,C78,C8,C81,D1
lof_cds	Chr3	29170234	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	1	B15
typical_cds_rare	Chr3	29170234	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	1	B15
typical_cds_rare	Chr3	29170240	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	5	A23,B22,B67,C87,D11
lof_cds	Chr3	29170257	T	TTA	INDEL	2bp_insertion	frameshift_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	12	A4,B105,B114,B133,B42,B43,B71,B90,B92,C54,C65,C82
lof_cds	Chr3	29170279	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	7	B17,B33,B40,B56,C32,C49,C75
lof_cds	Chr3	29170287	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	10	A13,A5,B110,B113,C13,C14,C20,C25,C37,C5
typical_cds_rare	Chr3	29170291	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	3	B104,B56,B82
lof_cds	Chr3	29170306	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	87	A15,A22,A23,A24,A25,B101,B102,B103,B11,B112,B12,B120,B126,B127,B129,B13,B130,B133,B134,B136,B137,B139,B14,B15,B16,B2,B20,B22,B23,B25,B26,B27,B3,B33,B35,B36,B37,B47,B50,B53,B56,B59,B64,B66,B67,B68,B70,B73,B75,B76,B8,B81,B86,B9,B93,B96,C10,C16,C18,C2,C24,C25,C26,C27,C28,C32,C33,C34,C37,C42,C45,C57,C59,C60,C62,C63,C64,C65,C74,C77,C84,C86,C87,D11,D2,D4,D5
typical_cds_rare	Chr3	29170309	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	2	B96,C77
typical_cds_rare	Chr3	29170331	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	2	B36,C63
typical_cds_rare	Chr3	29170333	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	4	A8,B129,B16,B6
typical_cds_rare	Chr3	29170352	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	5	A19,B38,B47,B84,C18
typical_cds_rare	Chr3	29170359	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	3	B80,B98,C50
typical_cds_rare	Chr3	29170389	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	2	B36,B64
lof_cds	Chr3	29170399	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	192	A1,A10,A11,A13,A15,A16,A18,A2,A20,A22,A23,A24,A25,A4,A5,A6,A7,A8,A9,B1,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B113,B115,B118,B12,B123,B125,B126,B127,B128,B129,B13,B130,B132,B133,B134,B135,B136,B137,B138,B139,B15,B16,B17,B18,B2,B20,B22,B23,B25,B26,B27,B3,B31,B32,B33,B34,B35,B36,B37,B39,B4,B40,B45,B46,B47,B48,B5,B50,B52,B53,B55,B56,B57,B58,B59,B60,B61,B64,B65,B66,B67,B68,B69,B7,B70,B72,B73,B76,B77,B79,B8,B80,B81,B82,B84,B85,B86,B87,B89,B9,B90,B91,B92,B93,B94,B95,B96,B98,B99,C1,C11,C13,C14,C15,C16,C17,C18,C19,C21,C22,C24,C25,C26,C27,C29,C32,C33,C34,C36,C37,C38,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C51,C52,C53,C55,C57,C58,C59,C6,C61,C63,C64,C65,C66,C67,C69,C7,C72,C74,C75,C76,C78,C79,C8,C82,C84,C85,C86,C87,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8
lof_cds	Chr3	29170410	TGA	T	INDEL	2bp_deletion	frameshift_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	6	B105,B14,B20,B27,C31,C33
typical_cds_rare	Chr3	29170417	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	2	B27,B79
lof_cds	Chr3	29170420	C	CCA	INDEL	2bp_insertion	frameshift_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	4	C10,C27,C29,C4
typical_cds_rare	Chr3	29170420	C	CCA	INDEL	2bp_insertion	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	4	C10,C27,C29,C4
typical_cds_rare	Chr3	29170421	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	3	B80,B98,C50
lof_cds	Chr3	29170430	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	74	A10,A13,A20,A4,A6,A7,B1,B100,B101,B104,B109,B110,B111,B118,B12,B123,B137,B138,B18,B2,B25,B26,B31,B32,B34,B35,B40,B45,B46,B48,B60,B61,B67,B68,B69,B7,B72,B73,B77,B8,B81,B82,B84,B90,B92,B94,C16,C19,C21,C24,C27,C29,C38,C4,C41,C51,C53,C55,C58,C6,C61,C65,C7,C8,C85,C87,D1,D10,D11,D2,D3,D5,D6,D7
typical_cds_rare	Chr3	29170440	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	4	B44,B58,C51,C74
lof_cds	Chr3	29170441	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	8	B124,B16,B6,B8,B88,C22,C65,C67
typical_cds_rare	Chr3	29170460	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	4	B48,C61,C62,D2
typical_cds_rare	Chr3	29170484	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	1	D10
lof_cds	Chr3	29170486	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018625	SmilChr03G001989	131018625	rna-XM_057947341.1	216	A1,A10,A14,A15,A18,A19,A2,A20,A22,A25,A3,A4,A6,A7,A8,A9,B1,B10,B100,B101,B102,B105,B106,B108,B109,B11,B112,B113,B114,B117,B119,B12,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B134,B135,B136,B137,B138,B139,B14,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B28,B3,B30,B32,B34,B36,B37,B38,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B51,B52,B55,B56,B57,B58,B59,B6,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B71,B72,B73,B74,B75,B76,B77,B78,B79,B8,B80,B82,B83,B84,B85,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C52,C53,C54,C56,C57,C58,C6,C60,C61,C62,C64,C66,C67,C68,C69,C7,C70,C71,C72,C73,C75,C76,C77,C79,C81,C82,C83,C84,C85,C87,C9,D1,D11,D2,D3,D4,D5,D6,D8,D9