source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr3	38853972	CT	C	INDEL	1bp_deletion	frameshift_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	11	B138,B14,B25,B40,B58,B68,B90,B94,B99,C58,C73
lof_cds	Chr3	38853980	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	6	B130,B7,B93,C19,C78,C83
lof_cds	Chr3	38854095	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	145	A10,A11,A14,A15,A16,A18,A2,A21,A23,A24,A25,A3,A4,A5,A7,A8,A9,B1,B100,B102,B103,B107,B108,B11,B111,B113,B114,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B13,B130,B131,B136,B138,B140,B15,B16,B17,B18,B20,B21,B22,B24,B25,B26,B28,B30,B32,B37,B40,B46,B47,B49,B54,B56,B57,B58,B6,B60,B63,B64,B68,B69,B7,B71,B72,B73,B74,B75,B76,B79,B8,B80,B81,B83,B84,B85,B86,B87,B88,B89,B93,C11,C13,C14,C16,C18,C19,C21,C24,C26,C28,C29,C31,C32,C33,C36,C37,C38,C4,C40,C41,C44,C47,C48,C49,C51,C52,C55,C57,C58,C60,C62,C65,C68,C69,C71,C72,C73,C74,C78,C8,C82,C83,C84,C87,C9,D1,D10,D11,D2,D3,D4,D5
lof_cds	Chr3	38854100	T	TGA	INDEL	2bp_insertion	frameshift_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	20	A2,A23,A5,A8,B107,B123,B138,B139,B26,B34,B35,B84,B86,B88,C19,C31,C46,C7,C75,C87
typical_cds_rare	Chr3	38854104	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	1	B74
typical_cds_rare	Chr3	38854279	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	1	B121
typical_cds_rare	Chr3	38854280	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	1	B121
typical_cds_rare	Chr3	38854410	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	3	B100,B119,B71
typical_cds_rare	Chr3	38854433	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	4	B78,C27,C32,C68
lof_cds	Chr3	38854449	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	2	B4,B9
typical_cds_rare	Chr3	38854449	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	2	B4,B9
typical_cds_rare	Chr3	38854451	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	4	A2,B123,B46,C37
typical_cds_rare	Chr3	38854452	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	4	A2,B123,B46,C37
typical_cds_rare	Chr3	38854474	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	4	A8,B35,B70,C86
lof_cds	Chr3	38854485	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	13	A1,B129,B132,B14,B2,B37,B44,B50,B60,B87,B94,C12,D1
lof_cds	Chr3	38854559	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	3	B114,B88,D3
typical_cds_rare	Chr3	38854559	AT	A	INDEL	1bp_deletion	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	3	B114,B88,D3
lof_cds	Chr3	38854578	GCT	G	INDEL	2bp_deletion	frameshift_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	1	A11
typical_cds_rare	Chr3	38854578	GCT	G	INDEL	2bp_deletion	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	1	A11
lof_cds	Chr3	38854592	C	CCT	INDEL	2bp_insertion	frameshift_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	46	A1,A13,A2,A3,A7,A9,B107,B108,B120,B121,B123,B126,B137,B140,B21,B22,B25,B26,B30,B31,B35,B36,B41,B5,B54,B59,B6,B69,B70,B71,B78,B80,B82,B84,B88,B89,C19,C41,C50,C67,C70,C74,C75,C79,C80,C86
typical_cds_rare	Chr3	38854721	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	2	C58,C85
lof_cds	Chr3	38854821	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	2	B53,B66
typical_cds_rare	Chr3	38854821	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	2	B53,B66
lof_cds	Chr3	38854863	GTC	G	INDEL	2bp_deletion	frameshift_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	13	A13,A15,A23,A25,B102,B103,B136,B138,B139,B86,C28,C7,C85
typical_cds_rare	Chr3	38854894	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	4	B12,B124,B49,B79
typical_cds_rare	Chr3	38854898	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	1	B12
typical_cds_rare	Chr3	38854905	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	5	B20,B47,C33,C48,D4
typical_cds_rare	Chr3	38854967	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	1	C74
typical_cds_rare	Chr3	38855119	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	1	C31
lof_cds	Chr3	38855121	T	TCA	INDEL	2bp_insertion	frameshift_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	12	A11,A24,B112,B121,B124,B129,B46,B71,B98,C16,C46,C48
lof_cds	Chr3	38855123	TTG	T	INDEL	2bp_deletion	frameshift_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	12	A11,A24,B112,B121,B124,B129,B46,B71,B98,C16,C46,C48
typical_cds_rare	Chr3	38855244	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	2	B118,B22
typical_cds_rare	Chr3	38855245	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	2	B4,B9
lof_cds	Chr3	38856427	G	GAT	INDEL	2bp_insertion	frameshift_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	4	B100,B48,C58,C85
typical_cds_rare	Chr3	38856427	G	GAT	INDEL	2bp_insertion	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	4	B100,B48,C58,C85
lof_cds	Chr3	38856501	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	2	B118,B22
typical_cds_rare	Chr3	38856501	GA	G	INDEL	1bp_deletion	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	2	B118,B22
typical_cds_rare	Chr3	38856534	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	2	B118,B22
typical_cds_rare	Chr3	38856562	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	3	B139,B4,C54
typical_cds_rare	Chr3	38856566	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	2	B114,B127
typical_cds_rare	Chr3	38856612	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	2	B30,B39
typical_cds_rare	Chr3	38856705	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	5	A9,B112,B77,B82,C65
lof_cds	Chr3	38856714	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	2	B123,D1
typical_cds_rare	Chr3	38856714	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	2	B123,D1
typical_cds_rare	Chr3	38856731	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	5	B30,B38,B39,C13,C85
typical_cds_rare	Chr3	38856783	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	4	B12,B124,B49,B79
typical_cds_rare	Chr3	38856785	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	2	A11,A24
lof_cds	Chr3	38856810	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	10	A15,A23,B138,B139,B34,B71,B86,C28,C31,C7
typical_cds_rare	Chr3	38856894	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	2	B118,B22
lof_cds	Chr3	38856941	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	3	B121,B71,B80
typical_cds_rare	Chr3	38856941	TA	T	INDEL	1bp_deletion	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	3	B121,B71,B80
lof_cds	Chr3	38856950	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	2	B114,B127
typical_cds_rare	Chr3	38856950	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	2	B114,B127
lof_cds	Chr3	38856952	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	3	B121,B71,B80
typical_cds_rare	Chr3	38856952	A	AG	INDEL	1bp_insertion	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	3	B121,B71,B80
lof_cds	Chr3	38857034	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	4	A13,A23,C28,C85
typical_cds_rare	Chr3	38857034	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	4	A13,A23,C28,C85
typical_cds_rare	Chr3	38857114	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	2	B100,B48
typical_cds_rare	Chr3	38857131	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	1	C83
typical_cds_rare	Chr3	38857202	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	2	B74,C82
typical_cds_rare	Chr3	38857224	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	1	B13
lof_cds	Chr3	38857233	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	30	A10,B117,B120,B122,B123,B124,B125,B16,B17,B21,B49,B56,B58,B60,B68,B77,C24,C28,C29,C40,C41,C52,C57,C58,C62,C72,C73,C74,C8,D1
lof_cds	Chr3	38857254	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	1	C37
typical_cds_rare	Chr3	38857254	TA	T	INDEL	1bp_deletion	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	1	C37
typical_cds_rare	Chr3	38857270	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	4	B12,B124,B49,B79
typical_cds_rare	Chr3	38857292	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	2	B118,B22
typical_cds_rare	Chr3	38857296	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	4	B114,B118,B127,B22
typical_cds_rare	Chr3	38857355	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	1	B132
typical_cds_rare	Chr3	38857511	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	5	A11,B129,B46,B98,C16
typical_cds_rare	Chr3	38857515	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	2	B5,B57
lof_cds	Chr3	38857517	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	1	C12
typical_cds_rare	Chr3	38857517	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	1	C12
typical_cds_rare	Chr3	38857526	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	4	A2,B123,B46,C37
typical_cds_rare	Chr3	38857529	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	4	B12,B124,B49,B79
lof_cds	Chr3	38857557	GAT	G	INDEL	2bp_deletion	frameshift_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	5	B108,B122,B88,B89,C74
typical_cds_rare	Chr3	38857557	GAT	G	INDEL	2bp_deletion	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	5	B108,B122,B88,B89,C74
typical_cds_rare	Chr3	38857588	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	3	A8,B70,C86
typical_cds_rare	Chr3	38857593	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018780	SmilChr03G002446	131018780	rna-XM_057947486.1	3	A8,B70,C86