source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr3	40620595	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	1	B78
typical_cds_rare	Chr3	40620595	AT	A	INDEL	1bp_deletion	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	1	B78
typical_cds_rare	Chr3	40620605	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	5	A9,B115,C3,C36,C49
lof_cds	Chr3	40621237	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	3	A13,B60,C52
typical_cds_rare	Chr3	40621237	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	3	A13,B60,C52
lof_cds	Chr3	40621245	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	1	D11
typical_cds_rare	Chr3	40621245	T	TA	INDEL	1bp_insertion	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	1	D11
lof_cds	Chr3	40621256	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	40	A20,A22,A3,A5,A9,B10,B105,B112,B118,B119,B136,B17,B20,B25,B26,B32,B37,B38,B39,B41,B53,B66,B70,B77,B78,B91,C31,C38,C41,C42,C48,C50,C55,C57,C59,C6,C65,C85,D2,D7
typical_cds_rare	Chr3	40621283	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	1	D10
typical_cds_rare	Chr3	40621314	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	2	B103,B136
typical_cds_rare	Chr3	40621324	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	1	D11
typical_cds_rare	Chr3	40621341	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	1	D11
typical_cds_rare	Chr3	40621372	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	2	B60,B78
lof_cds	Chr3	40621387	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	8	B29,B38,B48,B81,B84,C44,C5,D5
lof_cds	Chr3	40621395	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	120	A10,A18,A2,A22,A23,A24,A25,B10,B102,B106,B107,B110,B114,B115,B117,B119,B122,B124,B125,B126,B130,B132,B135,B137,B14,B15,B16,B17,B19,B21,B27,B28,B29,B3,B30,B31,B36,B38,B4,B42,B43,B44,B46,B5,B51,B52,B54,B55,B56,B57,B58,B6,B60,B62,B65,B66,B69,B71,B73,B76,B77,B8,B81,B86,B88,B9,B90,B93,B95,B96,B97,B99,C1,C10,C12,C14,C15,C18,C19,C2,C21,C23,C27,C3,C34,C35,C37,C4,C40,C41,C42,C43,C44,C46,C47,C48,C51,C53,C54,C55,C60,C63,C64,C65,C66,C67,C68,C7,C71,C74,C78,C79,C81,C84,C85,C86,C87,C9,D4,D9
typical_cds_rare	Chr3	40621404	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	1	B104
typical_cds_rare	Chr3	40621427	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	2	B108,B79
typical_cds_rare	Chr3	40621467	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	4	B41,C4,C57,D10
typical_cds_rare	Chr3	40621468	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	1	B9
typical_cds_rare	Chr3	40621481	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	1	D11
typical_cds_rare	Chr3	40621496	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	1	B108
typical_cds_rare	Chr3	40621497	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	1	B140
lof_cds	Chr3	40621522	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	5	B104,B50,B74,B89,C82
typical_cds_rare	Chr3	40621522	TC	T	INDEL	1bp_deletion	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	5	B104,B50,B74,B89,C82
typical_cds_rare	Chr3	40621551	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	2	B79,C43
typical_cds_rare	Chr3	40621568	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	4	A13,A24,B60,C52
typical_cds_rare	Chr3	40621644	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	1	B104
lof_cds	Chr3	40621690	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	3	B121,B133,B52
typical_cds_rare	Chr3	40621690	A	AT	INDEL	1bp_insertion	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	3	B121,B133,B52
lof_cds	Chr3	40621693	A	AGG	INDEL	2bp_insertion	frameshift_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	3	B121,B133,B52
typical_cds_rare	Chr3	40621693	A	AGG	INDEL	2bp_insertion	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	3	B121,B133,B52
typical_cds_rare	Chr3	40621732	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	1	C8
typical_cds_rare	Chr3	40621743	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	4	B101,B126,B33,B54
lof_cds	Chr3	40621765	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	6	A3,B1,B117,B122,C3,D1
lof_cds	Chr3	40621768	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	9	A13,A18,B11,B3,B30,B45,B62,C12,C45
lof_cds	Chr3	40621838	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	34	A13,A15,A16,A2,A24,B104,B108,B109,B139,B27,B34,B38,B56,B59,B60,B62,B79,B80,B96,C13,C25,C28,C33,C36,C44,C52,C58,C60,C62,C63,C70,C81,D3,D6
typical_cds_rare	Chr3	40622221	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	2	B103,B51
typical_cds_rare	Chr3	40622241	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	1	A19
typical_cds_rare	Chr3	40622255	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	1	C10
lof_cds	Chr3	40622288	GC	G	INDEL	1bp_deletion	frameshift_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	50	A16,A19,A3,A6,B100,B104,B107,B119,B12,B121,B127,B133,B139,B18,B29,B35,B38,B40,B48,B5,B52,B55,B59,B66,B69,B7,B81,B84,B91,B97,B98,C11,C22,C31,C33,C38,C45,C48,C5,C52,C55,C58,C62,C69,C7,C72,C73,C75,D5,D7
lof_cds	Chr3	40622295	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	1	B131
typical_cds_rare	Chr3	40622295	TA	T	INDEL	1bp_deletion	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	1	B131
typical_cds_rare	Chr3	40622421	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	1	B108
typical_cds_rare	Chr3	40622426	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	1	B15
typical_cds_rare	Chr3	40622436	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	3	B9,C13,C77
typical_cds_rare	Chr3	40622439	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	1	C47
typical_cds_rare	Chr3	40622503	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	1	B132
lof_cds	Chr3	40622537	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	2	B14,B69
typical_cds_rare	Chr3	40622537	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	2	B14,B69
typical_cds_rare	Chr3	40622540	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	2	B130,D10
typical_cds_rare	Chr3	40622542	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	2	B69,B9
lof_cds	Chr3	40622577	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	1	A16
typical_cds_rare	Chr3	40622577	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	1	A16
lof_cds	Chr3	40622580	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	2	B119,C33
typical_cds_rare	Chr3	40622580	TG	T	INDEL	1bp_deletion	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	2	B119,C33
typical_cds_rare	Chr3	40622642	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	1	B8
typical_cds_rare	Chr3	40622659	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	2	C37,D6
typical_cds_rare	Chr3	40622669	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	2	B131,C58
lof_cds	Chr3	40622689	CT	C	INDEL	1bp_deletion	frameshift_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	36	A14,A16,A20,A21,A7,B108,B123,B125,B132,B136,B16,B20,B31,B42,B43,B51,B57,B71,B72,B73,B9,C14,C15,C19,C21,C41,C46,C47,C49,C54,C61,C73,C80,C81,C9,D6
typical_cds_rare	Chr3	40622705	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	2	B60,B75
typical_cds_rare	Chr3	40622767	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	5	A9,B118,B20,C33,D7
typical_cds_rare	Chr3	40622796	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018803	SmilChr03G002544	131018803	rna-XM_057947512.1	1	B17