source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr3	46561302	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	5	B118,B21,B52,C61,D6
lof_cds	Chr3	46561323	A	ACT	INDEL	2bp_insertion	frameshift_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	6	B105,B134,B26,B45,C10,C43
lof_cds	Chr3	46561379	CTA	C	INDEL	2bp_deletion	frameshift_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	101	A10,A11,A14,A18,A19,A21,A25,A4,A6,A7,A9,B105,B106,B117,B119,B12,B121,B123,B124,B126,B133,B134,B135,B138,B139,B15,B18,B19,B21,B24,B26,B28,B3,B30,B31,B32,B34,B35,B4,B41,B42,B43,B44,B45,B46,B49,B52,B53,B54,B57,B58,B60,B63,B67,B68,B71,B74,B75,B81,B82,B87,B88,B93,C1,C14,C15,C16,C17,C20,C21,C24,C25,C26,C28,C29,C31,C32,C33,C36,C37,C38,C44,C46,C47,C49,C51,C60,C64,C66,C68,C70,C74,C76,C78,C79,C8,C80,C82,C84,C85,D7
typical_cds_rare	Chr3	46561385	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	1	C74
typical_cds_rare	Chr3	46561402	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	2	B117,B80
lof_cds	Chr3	46561408	C	CG	INDEL	1bp_insertion	frameshift_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	35	A10,A11,A6,B105,B106,B12,B126,B138,B15,B21,B26,B28,B31,B35,B42,B43,B45,B46,B49,B53,B67,B71,B82,C16,C24,C26,C28,C32,C38,C49,C51,C68,C78,C8,C82
lof_cds	Chr3	46561413	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	14	A9,B104,B112,B122,B43,B57,B59,B63,B70,C34,C57,C61,C7,C71
typical_cds_rare	Chr3	46561435	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	2	B132,B26
lof_cds	Chr3	46561588	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	8	A9,B119,B123,B134,B22,B36,B79,B87
lof_cds	Chr3	46561615	AGT	A	INDEL	2bp_deletion	frameshift_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	47	A13,A21,A25,A7,A9,B100,B104,B105,B106,B119,B123,B126,B133,B135,B137,B139,B140,B21,B22,B25,B34,B65,B68,B73,B85,B87,B93,B99,C10,C14,C16,C17,C27,C29,C3,C33,C35,C42,C50,C53,C58,C6,C74,C77,C84,D3,D5
lof_cds	Chr3	46561619	C	CAT	INDEL	2bp_insertion	frameshift_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	2	B123,C27
typical_cds_rare	Chr3	46561619	C	CAT	INDEL	2bp_insertion	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	2	B123,C27
lof_cds	Chr3	46561620	A	ACG	INDEL	2bp_insertion	frameshift_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	27	A25,A7,B133,B137,B139,B140,B25,B34,B65,B73,B85,B93,B99,C10,C16,C29,C33,C35,C42,C50,C53,C58,C6,C74,C77,C84,D3
lof_cds	Chr3	46561621	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	9	A13,B100,B105,B106,B135,B68,C14,C17,D5
lof_cds	Chr3	46561627	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	6	B34,B75,B79,C13,C39,C83
typical_cds_rare	Chr3	46561642	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	1	B122
typical_cds_rare	Chr3	46561651	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	3	B127,B76,D2
lof_cds	Chr3	46561662	C	CAT	INDEL	2bp_insertion	frameshift_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	6	A18,B117,B47,B6,B80,C67
typical_cds_rare	Chr3	46561677	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	1	A3
typical_cds_rare	Chr3	46561719	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	2	C32,C68
typical_cds_rare	Chr3	46561731	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	1	C53
typical_cds_rare	Chr3	46561743	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	5	B73,B8,C28,C38,D6
typical_cds_rare	Chr3	46561755	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	1	B52
typical_cds_rare	Chr3	46561759	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	2	B122,C16
typical_cds_rare	Chr3	46561767	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	5	B73,B8,C28,C38,D6
lof_cds	Chr3	46561784	CT	C	INDEL	1bp_deletion	frameshift_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	8	A13,B105,B106,B135,B140,B22,C14,C45
typical_cds_rare	Chr3	46561798	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	3	B132,B26,D8
lof_cds	Chr3	46561825	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	2	B54,C81
typical_cds_rare	Chr3	46561825	TG	T	INDEL	1bp_deletion	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	2	B54,C81
typical_cds_rare	Chr3	46561845	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	3	B75,C16,D10
lof_cds	Chr3	46561868	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	10	B124,B14,B30,B54,C37,C48,C74,C81,C85,C87
typical_cds_rare	Chr3	46561951	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	1	B75
typical_cds_rare	Chr3	46561970	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	1	B117
typical_cds_rare	Chr3	46561973	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	2	C32,C68
typical_cds_rare	Chr3	46561975	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	5	B17,B36,B73,C1,C41
lof_cds	Chr3	46561990	G	GAT	INDEL	2bp_insertion	frameshift_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	7	B134,B26,B56,B76,B81,B96,D6
typical_cds_rare	Chr3	46562002	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	3	B63,B83,C46
typical_cds_rare	Chr3	46562020	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	4	B63,B83,C46,C82
lof_cds	Chr3	46562043	C	CTG	INDEL	2bp_insertion	frameshift_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	1	B13
typical_cds_rare	Chr3	46562043	C	CTG	INDEL	2bp_insertion	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	1	B13
typical_cds_rare	Chr3	46562050	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	3	C32,C68,C74
lof_cds	Chr3	46562099	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	17	A7,A9,B103,B112,B13,B2,B42,B43,B57,B59,B95,C14,C33,C34,C58,C7,C71
typical_cds_rare	Chr3	46562122	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	1	C37
typical_cds_rare	Chr3	46562155	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	1	B75
typical_cds_rare	Chr3	46562195	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	3	B137,B65,C48
lof_cds	Chr3	46562224	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	9	A9,B112,B42,B43,B57,B59,C34,C7,C71
lof_cds	Chr3	46562259	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	3	B121,B28,B97
typical_cds_rare	Chr3	46562259	AG	A	INDEL	1bp_deletion	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	3	B121,B28,B97
typical_cds_rare	Chr3	46562261	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	3	B121,B28,B97
typical_cds_rare	Chr3	46562263	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	5	B118,B21,B52,C61,D6
lof_cds	Chr3	46562270	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	54	A11,A14,A19,A2,A21,A22,A25,A9,B102,B103,B113,B115,B12,B121,B127,B131,B135,B23,B29,B36,B48,B50,B51,B59,B66,B67,B73,B84,B88,B94,C1,C16,C18,C19,C30,C33,C43,C45,C48,C49,C50,C52,C54,C56,C64,C65,C66,C76,C8,C80,D1,D2,D7,D9
typical_cds_rare	Chr3	46562274	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	2	B121,B28
typical_cds_rare	Chr3	46562277	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	1	B13
typical_cds_rare	Chr3	46562281	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	5	B122,B63,B83,C16,C46
typical_cds_rare	Chr3	46562286	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	4	A7,B130,B54,C81
lof_cds	Chr3	46562287	A	ACC	INDEL	2bp_insertion	frameshift_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	3	B121,B28,C72
typical_cds_rare	Chr3	46562287	A	ACC	INDEL	2bp_insertion	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	3	B121,B28,C72
typical_cds_rare	Chr3	46562298	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	3	B121,B28,C72
typical_cds_rare	Chr3	46562327	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	1	C35
lof_cds	Chr3	46562363	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	113	A1,A10,A11,A14,A16,A18,A19,A21,A22,A4,A6,A8,A9,B100,B105,B106,B108,B11,B110,B112,B117,B119,B12,B123,B124,B126,B129,B133,B134,B135,B138,B139,B15,B16,B19,B24,B26,B28,B3,B30,B31,B32,B34,B35,B36,B41,B42,B43,B44,B45,B46,B47,B49,B53,B54,B55,B57,B58,B60,B62,B64,B67,B68,B71,B74,B75,B76,B79,B82,B87,B88,B9,B93,C1,C10,C15,C16,C17,C20,C21,C22,C23,C24,C26,C27,C28,C31,C32,C35,C36,C38,C43,C45,C47,C49,C51,C59,C65,C67,C68,C76,C78,C79,C8,C80,C82,C84,C85,C87,C9,D10,D4,D7
lof_cds	Chr3	46562366	G	GT	INDEL	1bp_insertion	frameshift_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	108	A1,A10,A11,A14,A16,A18,A19,A21,A22,A4,A6,A8,A9,B100,B105,B106,B108,B11,B110,B112,B117,B119,B12,B123,B124,B126,B129,B134,B135,B138,B139,B15,B16,B19,B24,B26,B28,B3,B30,B31,B32,B34,B35,B36,B41,B42,B43,B44,B45,B46,B47,B49,B53,B54,B55,B57,B58,B60,B62,B67,B68,B71,B74,B75,B76,B79,B82,B87,B9,B93,C1,C10,C15,C16,C17,C20,C21,C22,C23,C26,C27,C28,C31,C32,C35,C38,C43,C45,C47,C49,C51,C59,C65,C67,C68,C76,C78,C79,C8,C80,C82,C84,C85,C87,C9,D10,D4,D7
lof_cds	Chr3	46562379	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	10	B104,B122,B37,B63,B70,C16,C46,C57,C61,D8
lof_cds	Chr3	46562386	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	1	B76
typical_cds_rare	Chr3	46562386	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	1	B76
typical_cds_rare	Chr3	46562399	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	5	B8,C28,C38,C78,D6
typical_cds_rare	Chr3	46562402	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	2	A13,C17
typical_cds_rare	Chr3	46562481	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018883	SmilChr03G002975	131018883	rna-XM_057947577.1	1	B54