source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr3	47196269	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	2	B24,C29
lof_cds	Chr3	47196290	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	1	C87
typical_cds_rare	Chr3	47196290	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	1	C87
lof_cds	Chr3	47196312	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	154	A1,A10,A13,A14,A16,A18,A2,A20,A22,A23,A24,A25,A5,A6,B1,B10,B100,B101,B102,B103,B104,B108,B109,B11,B117,B118,B12,B120,B121,B122,B123,B125,B127,B129,B130,B131,B132,B133,B137,B138,B14,B140,B16,B18,B19,B20,B21,B22,B25,B26,B27,B28,B29,B30,B31,B33,B34,B35,B4,B41,B42,B43,B44,B46,B48,B49,B50,B51,B54,B55,B56,B57,B59,B60,B61,B62,B64,B65,B66,B68,B69,B7,B74,B75,B76,B78,B8,B80,B86,B89,B90,B92,B93,B95,B96,B97,B98,B99,C1,C13,C16,C17,C18,C20,C21,C22,C23,C24,C25,C27,C28,C34,C35,C37,C38,C4,C40,C41,C42,C44,C46,C47,C48,C51,C54,C55,C56,C57,C58,C59,C6,C60,C61,C63,C67,C71,C73,C75,C76,C77,C79,C8,C80,C83,C84,C85,C86,C87,D11,D2,D6,D7,D8,D9
typical_cds_rare	Chr3	47196314	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	1	D7
lof_cds	Chr3	47196339	TTC	T	INDEL	2bp_deletion	frameshift_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	7	A7,B13,B130,B2,B54,C79,C81
lof_cds	Chr3	47196343	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	7	A14,A25,B138,B14,B22,C34,C47
lof_cds	Chr3	47196356	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	1	B105
typical_cds_rare	Chr3	47196356	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	1	B105
typical_cds_rare	Chr3	47196360	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	2	B3,C4
typical_cds_rare	Chr3	47196391	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	1	C45
lof_cds	Chr3	47196393	CTT	C	INDEL	2bp_deletion	frameshift_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	7	A18,B104,B139,B89,C10,C51,D6
typical_cds_rare	Chr3	47196398	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	2	C45,C77
lof_cds	Chr3	47196399	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	43	A10,A19,A2,A3,A4,A5,B101,B110,B117,B134,B25,B35,B38,B39,B41,B58,B59,B62,B66,B70,B71,B81,B89,B99,C12,C3,C32,C35,C40,C48,C52,C53,C55,C63,C69,C70,C74,C76,C84,C85,D10,D5,D8
typical_cds_rare	Chr3	47196429	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	4	A24,C28,C30,C35
typical_cds_rare	Chr3	47196438	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	2	C29,C7
typical_cds_rare	Chr3	47196439	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	2	B63,C76
lof_cds	Chr3	47196445	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	10	A13,B132,B44,B61,B67,B75,B76,B86,B97,C12
typical_cds_rare	Chr3	47196453	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	5	A24,B80,C28,C30,C35
typical_cds_rare	Chr3	47196455	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	2	C29,C7
lof_cds	Chr3	47196461	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	1	B16
typical_cds_rare	Chr3	47196461	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	1	B16
lof_cds	Chr3	47196469	AGT	A	INDEL	2bp_deletion	frameshift_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	1	C59
typical_cds_rare	Chr3	47196469	AGT	A	INDEL	2bp_deletion	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	1	C59
lof_cds	Chr3	47196479	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	3	B112,B93,C65
typical_cds_rare	Chr3	47196479	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	3	B112,B93,C65
typical_cds_rare	Chr3	47196482	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	1	B140
lof_cds	Chr3	47196483	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	7	B123,B14,B34,B65,C23,C38,C79
typical_cds_rare	Chr3	47196494	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	4	A22,B15,B65,C57
typical_cds_rare	Chr3	47196506	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	3	B138,B85,C81
typical_cds_rare	Chr3	47196522	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	3	A24,C30,C35
lof_cds	Chr3	47196533	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	12	A10,B10,B109,B32,B47,B63,B64,C24,C28,C29,C64,C73
typical_cds_rare	Chr3	47196542	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	2	B18,B75
typical_cds_rare	Chr3	47196549	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	2	A24,C30
typical_cds_rare	Chr3	47196562	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	1	B97
lof_cds	Chr3	47196574	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	8	A5,B10,B103,B32,B47,B63,C24,C64
lof_cds	Chr3	47196575	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	4	B34,B59,B97,C46
typical_cds_rare	Chr3	47196575	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	4	B34,B59,B97,C46
typical_cds_rare	Chr3	47196593	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	4	B105,B53,C25,C43
typical_cds_rare	Chr3	47196598	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	1	B56
lof_cds	Chr3	47196617	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	3	A2,B82,C61
typical_cds_rare	Chr3	47196617	GA	G	INDEL	1bp_deletion	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	3	A2,B82,C61
typical_cds_rare	Chr3	47196625	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	5	B118,B68,C1,C56,C82
typical_cds_rare	Chr3	47196632	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	1	B80
lof_cds	Chr3	47196648	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	35	A19,A20,A3,A4,A9,B119,B128,B130,B14,B17,B20,B36,B40,B44,B5,B66,B72,B76,B77,B9,B90,B93,B98,C1,C10,C19,C26,C31,C34,C40,C41,C74,C77,D2,D4
lof_cds	Chr3	47196651	CT	C	INDEL	1bp_deletion	frameshift_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	35	A19,A20,A3,A4,A9,B119,B128,B130,B14,B17,B20,B36,B40,B44,B5,B66,B72,B76,B77,B9,B90,B93,B98,C1,C10,C19,C26,C31,C34,C40,C41,C74,C77,D2,D4
typical_cds_rare	Chr3	47196661	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	3	B138,B85,C81
typical_cds_rare	Chr3	47196666	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	4	B105,B18,B66,D5
lof_cds	Chr3	47196680	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	68	A15,A16,A2,A21,A22,A25,A7,B1,B104,B105,B113,B115,B12,B123,B128,B13,B132,B133,B134,B21,B24,B28,B31,B41,B42,B43,B49,B5,B51,B54,B56,B57,B65,B67,B69,B79,B86,B87,B93,B96,C1,C14,C16,C24,C27,C30,C37,C44,C45,C46,C51,C52,C55,C57,C58,C60,C67,C68,C72,C73,C75,C76,C78,C79,C83,C87,D1,D6
typical_cds_rare	Chr3	47196686	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	4	A24,B80,C35,C81
typical_cds_rare	Chr3	47196708	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	1	B113
lof_cds	Chr3	47196713	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	9	B106,B107,B136,B65,B68,C13,C16,C40,C48
typical_cds_rare	Chr3	47196721	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	1	B113
lof_cds	Chr3	47196733	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	1	A16
typical_cds_rare	Chr3	47196733	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	1	A16
lof_cds	Chr3	47196734	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	26	B103,B112,B121,B123,B135,B137,B139,B24,B42,B43,B61,B65,B67,B93,C17,C20,C27,C51,C57,C59,C69,C77,C8,C82,D1,D6
lof_cds	Chr3	47196750	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	12	A16,B128,B135,B140,B20,B63,C1,C10,C21,C40,C54,C62
lof_cds	Chr3	47196776	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	95	A1,A14,A15,A18,A20,A22,A25,B1,B10,B100,B102,B108,B118,B12,B121,B126,B131,B133,B137,B14,B140,B16,B18,B19,B20,B21,B22,B25,B26,B27,B29,B30,B31,B33,B37,B4,B41,B45,B48,B52,B54,B55,B57,B6,B62,B64,B65,B66,B68,B75,B80,B9,B90,B92,B95,B96,B97,B99,C13,C16,C18,C19,C20,C21,C23,C24,C27,C28,C33,C34,C35,C36,C37,C38,C42,C44,C46,C53,C54,C56,C57,C58,C59,C61,C63,C67,C72,C76,C77,C8,C86,C87,D11,D7,D9
typical_cds_rare	Chr3	47196809	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	2	B38,B66
typical_cds_rare	Chr3	47196815	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	3	B29,B81,C40
lof_cds	Chr3	47196824	C	CAG	INDEL	2bp_insertion	frameshift_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	6	B132,B34,B44,B88,C12,C33
lof_cds	Chr3	47196825	GAC	G	INDEL	2bp_deletion	frameshift_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	6	B132,B34,B44,B88,C12,C33
lof_cds	Chr3	47196831	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	5	A11,B117,B9,C48,C87
typical_cds_rare	Chr3	47196831	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	5	A11,B117,B9,C48,C87
typical_cds_rare	Chr3	47196865	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	4	B36,B75,C46,D4
lof_cds	Chr3	47196887	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	4	A9,B5,B93,C77
typical_cds_rare	Chr3	47196887	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	4	A9,B5,B93,C77
lof_cds	Chr3	47196897	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	39	A25,B103,B108,B11,B113,B124,B125,B126,B129,B131,B138,B17,B22,B23,B27,B41,B42,B43,B44,B49,B5,B58,B60,B62,B79,B80,B99,C14,C17,C26,C36,C39,C41,C45,C5,C54,C80,C87,D7
typical_cds_rare	Chr3	47196908	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	1	C39
typical_cds_rare	Chr3	47196939	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	3	B56,B93,B96
typical_cds_rare	Chr3	47196952	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	1	B32
typical_cds_rare	Chr3	47196959	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	1	B17
typical_cds_rare	Chr3	47196970	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	1	C44
typical_cds_rare	Chr3	47196998	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	2	A1,C27
lof_cds	Chr3	47197025	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	12	B103,B117,B119,B135,B54,B73,C16,C29,C35,C51,C61,D2
typical_cds_rare	Chr3	47197037	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	5	A20,B52,B89,C7,D10
typical_cds_rare	Chr3	47197041	AG	*	INDEL	1bp_deletion	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	1	D7
lof_cds	Chr3	47197072	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	2	C86,D6
typical_cds_rare	Chr3	47197072	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	2	C86,D6
typical_cds_rare	Chr3	47197079	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	3	A20,B69,D10
lof_cds	Chr3	47197088	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	2	A4,B133
typical_cds_rare	Chr3	47197088	TG	T	INDEL	1bp_deletion	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	2	A4,B133
lof_cds	Chr3	47197102	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	80	A14,A15,A16,A18,A24,B1,B10,B100,B101,B108,B11,B121,B129,B14,B140,B20,B21,B22,B28,B30,B36,B41,B42,B44,B49,B55,B57,B59,B60,B62,B65,B66,B69,B76,B78,B80,B86,B9,B90,B92,B96,B97,B98,B99,C1,C13,C15,C16,C17,C18,C21,C24,C25,C27,C28,C34,C35,C38,C4,C41,C42,C44,C46,C48,C53,C54,C56,C59,C6,C67,C75,C76,C8,C80,C86,C87,D2,D5,D6,D7
lof_cds	Chr3	47197106	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	83	A14,A15,A16,A18,A24,B1,B10,B100,B101,B108,B11,B12,B121,B122,B129,B14,B140,B20,B21,B22,B28,B30,B33,B36,B4,B41,B44,B49,B55,B57,B59,B60,B62,B65,B66,B69,B76,B78,B80,B86,B9,B90,B92,B96,B97,B98,B99,C1,C13,C15,C16,C17,C18,C21,C24,C25,C27,C28,C34,C35,C38,C4,C41,C42,C44,C46,C48,C53,C54,C56,C59,C6,C67,C75,C76,C8,C80,C86,C87,D2,D5,D6,D7
lof_cds	Chr3	47197115	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	2	C71,C84
typical_cds_rare	Chr3	47197115	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018903	SmilChr03G003027	131018903	rna-XM_057947594.1	2	C71,C84