source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr3	52413843	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	2	B9,C72
typical_cds_rare	Chr3	52413843	TG	T	INDEL	1bp_deletion	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	2	B9,C72
lof_cds	Chr3	52413854	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	1	B80
typical_cds_rare	Chr3	52413854	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	1	B80
lof_cds	Chr3	52413868	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	3	B119,B3,C77
typical_cds_rare	Chr3	52413868	C	CA	INDEL	1bp_insertion	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	3	B119,B3,C77
typical_cds_rare	Chr3	52413877	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	1	B71
typical_cds_rare	Chr3	52413879	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	1	B5
typical_cds_rare	Chr3	52413881	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	4	B131,B77,B79,C76
lof_cds	Chr3	52413894	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	38	A6,B10,B101,B102,B106,B11,B115,B118,B123,B126,B134,B19,B26,B35,B41,B44,B53,B64,B73,B74,B80,B89,B98,B99,C21,C22,C23,C25,C26,C3,C30,C41,C47,C51,C7,C71,C74,C75
lof_cds	Chr3	52413905	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	2	B73,C43
typical_cds_rare	Chr3	52413905	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	2	B73,C43
typical_cds_rare	Chr3	52413909	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	5	B125,B34,B35,B97,C73
typical_cds_rare	Chr3	52413914	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	3	A8,C79,C87
typical_cds_rare	Chr3	52413935	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	2	B102,B13
lof_cds	Chr3	52413955	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	31	A15,A18,A4,A9,B110,B12,B125,B128,B132,B140,B15,B28,B46,B49,B63,B66,B68,B89,C21,C30,C34,C37,C45,C46,C55,C69,C74,C79,C85,D4,D5
typical_cds_rare	Chr3	52413956	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	3	B131,B77,B79
typical_cds_rare	Chr3	52413968	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	2	A9,B91
typical_cds_rare	Chr3	52413987	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	5	B127,B25,C6,C82,D5
typical_cds_rare	Chr3	52414021	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	5	A23,B122,B24,B63,C29
typical_cds_rare	Chr3	52414029	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	4	A3,B95,C13,C49
typical_cds_rare	Chr3	52414059	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	4	B98,C48,D10,D11
typical_cds_rare	Chr3	52414062	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	4	B114,B12,B30,C57
typical_cds_rare	Chr3	52414105	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	3	A22,A24,C33
typical_cds_rare	Chr3	52414128	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	2	B103,D8
typical_cds_rare	Chr3	52414138	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	5	B101,B12,B32,B55,C73
typical_cds_rare	Chr3	52414143	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	1	C78
typical_cds_rare	Chr3	52414153	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	2	B75,C43
lof_cds	Chr3	52414157	GC	G	INDEL	1bp_deletion	frameshift_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	17	A14,A21,A6,A8,B1,B101,B113,B3,B81,B94,C14,C27,C32,C5,C57,C68,C8
typical_cds_rare	Chr3	52414160	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	1	C87
typical_cds_rare	Chr3	52414163	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	2	A2,D11
lof_cds	Chr3	52414174	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	91	A10,A11,A13,A16,A2,A20,A7,A8,B1,B104,B107,B109,B110,B111,B112,B118,B12,B125,B126,B127,B130,B133,B136,B138,B140,B18,B20,B22,B23,B27,B28,B29,B30,B31,B35,B37,B41,B42,B43,B50,B51,B52,B55,B57,B58,B62,B64,B67,B69,B78,B8,B80,B84,B9,B90,B91,B92,B93,B97,B98,C1,C10,C19,C24,C25,C27,C32,C37,C39,C4,C42,C45,C46,C47,C48,C52,C55,C57,C6,C61,C62,C63,C64,C66,C68,C79,C8,C80,C83,D2,D5
typical_cds_rare	Chr3	52414180	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	2	B103,D8
typical_cds_rare	Chr3	52414277	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	4	A4,B76,B95,C53
typical_cds_rare	Chr3	52414279	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	3	B112,B132,B89
typical_cds_rare	Chr3	52414290	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	4	B74,B98,C16,C48
typical_cds_rare	Chr3	52414300	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	2	B65,C20
lof_cds	Chr3	52414303	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	49	A16,A2,A25,A4,A9,B101,B105,B110,B117,B128,B130,B134,B137,B139,B14,B16,B2,B23,B24,B3,B40,B43,B45,B46,B65,B70,B78,B8,B93,B95,B96,C1,C13,C4,C40,C42,C44,C49,C50,C53,C60,C61,C65,C70,C80,D2,D5,D7,D9
typical_cds_rare	Chr3	52414314	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	5	B21,B67,C18,C2,C62
typical_cds_rare	Chr3	52414340	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	3	B114,B12,C57
typical_cds_rare	Chr3	52414371	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	2	C12,C32
typical_cds_rare	Chr3	52414386	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	3	B106,B17,D10
typical_cds_rare	Chr3	52414401	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	2	B87,D6
typical_cds_rare	Chr3	52414471	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	1	C48
typical_cds_rare	Chr3	52414496	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	2	C23,C71
typical_cds_rare	Chr3	52414497	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	5	A14,B124,B60,C10,C26
typical_cds_rare	Chr3	52414507	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	4	A18,A20,C54,C86
typical_cds_rare	Chr3	52414521	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	3	B90,B92,C31
lof_cds	Chr3	52414556	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	1	B124
typical_cds_rare	Chr3	52414556	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	1	B124
typical_cds_rare	Chr3	52414568	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	3	B127,D11,D5
typical_cds_rare	Chr3	52414581	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	1	B124
typical_cds_rare	Chr3	52414586	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	2	B103,D8
typical_cds_rare	Chr3	52414588	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	5	A18,B103,B44,B62,D8
typical_cds_rare	Chr3	52414605	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	1	B102
lof_cds	Chr3	52414631	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	2	A20,C54
typical_cds_rare	Chr3	52414631	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	2	A20,C54
typical_cds_rare	Chr3	52414643	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	1	C48
lof_cds	Chr3	52414651	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	17	B106,B114,B123,B126,B25,B34,B38,B39,B45,B5,B52,B88,C16,C47,C57,C63,D3
lof_cds	Chr3	52414700	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	42	A11,A2,A7,B102,B109,B111,B118,B119,B126,B127,B133,B134,B17,B18,B19,B22,B25,B3,B34,B35,B41,B45,B59,B65,B74,B75,B82,B88,B89,C1,C17,C25,C28,C35,C39,C41,C49,C51,C53,C70,C74,C86
typical_cds_rare	Chr3	52414737	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	3	B105,C70,C82
typical_cds_rare	Chr3	52414743	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	5	A6,A8,B1,B113,C68
typical_cds_rare	Chr3	52414746	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	1	C86
typical_cds_rare	Chr3	52414751	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	3	A24,B117,B60
typical_cds_rare	Chr3	52414772	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	5	A11,B109,B49,C1,C79
typical_cds_rare	Chr3	52414791	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	1	C21
typical_cds_rare	Chr3	52414797	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	4	A6,A8,C27,C68
typical_cds_rare	Chr3	52414824	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	2	A11,B111
typical_cds_rare	Chr3	52414863	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	4	A10,B1,D10,D4
typical_cds_rare	Chr3	52414864	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	4	A6,B95,C20,D9
lof_cds	Chr3	52414889	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	2	A13,B84
typical_cds_rare	Chr3	52414889	AG	A	INDEL	1bp_deletion	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	2	A13,B84
typical_cds_rare	Chr3	52414891	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018977	SmilChr03G003407	131018977	rna-XM_057947661.1	2	B50,C13