source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr3	52476457	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	14	A22,A3,A9,B103,B104,B119,B128,B65,B78,C18,C31,C49,C8,D9
typical_cds_rare	Chr3	52476520	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	1	B59
lof_cds	Chr3	52476527	GCC	G	INDEL	2bp_deletion	frameshift_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	88	A1,A10,A11,A13,A15,A2,A20,A22,A24,A3,A9,B1,B10,B117,B12,B123,B125,B13,B132,B133,B139,B14,B15,B16,B2,B23,B25,B27,B35,B37,B4,B47,B5,B52,B53,B54,B55,B56,B6,B62,B71,B76,B79,B82,B83,B86,B88,B89,B90,B91,B92,B94,B96,B98,B99,C12,C14,C16,C21,C22,C28,C29,C30,C33,C41,C44,C5,C51,C53,C56,C57,C59,C60,C61,C62,C63,C73,C75,C76,C77,C79,C81,C82,C83,C85,C86,D10,D5
lof_cds	Chr3	52476530	C	CG	INDEL	1bp_insertion	frameshift_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	113	A1,A10,A13,A14,A16,A4,A5,A6,A7,B1,B10,B101,B102,B106,B107,B108,B109,B11,B111,B112,B113,B115,B124,B126,B127,B13,B130,B132,B134,B135,B136,B137,B15,B16,B18,B20,B23,B24,B26,B28,B29,B30,B34,B37,B38,B39,B41,B45,B46,B47,B48,B49,B5,B50,B54,B56,B57,B59,B6,B60,B61,B62,B63,B64,B67,B7,B72,B73,B74,B76,B79,B81,B85,B86,B89,B90,B96,C10,C12,C13,C15,C16,C24,C25,C27,C3,C33,C35,C38,C39,C4,C40,C41,C45,C46,C48,C50,C52,C53,C56,C63,C67,C7,C76,C78,C79,C86,C87,D1,D2,D3,D5,D6
lof_cds	Chr3	52476534	C	CCT	INDEL	2bp_insertion	frameshift_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	1	C37
typical_cds_rare	Chr3	52476534	C	CCT	INDEL	2bp_insertion	CDS_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	1	C37
lof_cds	Chr3	52476535	C	CCT	INDEL	2bp_insertion	frameshift_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	10	A3,A9,B103,B119,B65,B78,C18,C31,C49,D9
typical_cds_rare	Chr3	52476536	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	4	B100,B118,B31,B69
lof_cds	Chr3	52476977	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	1	B117
typical_cds_rare	Chr3	52476977	TC	T	INDEL	1bp_deletion	CDS_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	1	B117
typical_cds_rare	Chr3	52477017	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	1	C44
typical_cds_rare	Chr3	52477068	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	4	A21,A22,B112,B52
typical_cds_rare	Chr3	52477074	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	3	B46,D2,D5
typical_cds_rare	Chr3	52477078	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	1	A21
lof_cds	Chr3	52477089	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	141	A1,A10,A11,A13,A14,A15,A16,A23,A4,A5,A6,A7,B1,B10,B101,B103,B106,B107,B108,B109,B11,B111,B112,B113,B115,B118,B119,B124,B126,B127,B129,B13,B130,B132,B134,B135,B136,B137,B140,B15,B16,B18,B20,B22,B23,B24,B25,B26,B28,B29,B3,B30,B32,B33,B34,B37,B38,B39,B40,B41,B45,B46,B47,B48,B49,B5,B50,B54,B55,B56,B57,B59,B6,B60,B61,B62,B63,B64,B69,B7,B70,B72,B73,B74,B76,B79,B80,B81,B85,B86,B89,B9,B90,B92,B96,C10,C12,C13,C15,C18,C2,C24,C25,C27,C3,C33,C35,C37,C38,C39,C4,C40,C41,C45,C48,C50,C52,C53,C56,C58,C6,C63,C65,C67,C7,C73,C74,C76,C78,C79,C8,C84,C86,C87,D1,D2,D3,D4,D5,D6,D9
typical_cds_rare	Chr3	52477113	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	3	A22,B108,D10
typical_cds_rare	Chr3	52477122	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	4	A21,A22,B112,B52
typical_cds_rare	Chr3	52477137	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	1	A22
typical_cds_rare	Chr3	52477177	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	2	B17,C83
typical_cds_rare	Chr3	52477196	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	1	C8
typical_cds_rare	Chr3	52477200	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	2	B108,C23
lof_cds	Chr3	52477212	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	74	A1,A10,A11,A15,A23,A4,A6,B1,B101,B103,B106,B107,B108,B11,B111,B113,B117,B118,B124,B126,B135,B15,B16,B20,B22,B23,B24,B28,B3,B33,B38,B39,B40,B41,B47,B48,B49,B5,B54,B55,B57,B62,B7,B73,B74,B79,B85,B88,B89,B90,B92,C10,C15,C18,C4,C41,C44,C45,C48,C50,C52,C56,C58,C63,C65,C7,C74,C76,C78,C79,C84,C87,D1,D3
typical_cds_rare	Chr3	52477214	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	2	B17,C83
typical_cds_rare	Chr3	52477225	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	1	C44
lof_cds	Chr3	52477231	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	9	B11,B127,B130,B67,C16,C38,C45,C46,D3
lof_cds	Chr3	52477476	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	22	A19,A20,B100,B121,B17,B29,B31,B44,B58,B64,B69,B74,B84,B94,B98,C1,C31,C49,C71,C80,C83,C84
typical_cds_rare	Chr3	52477536	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	2	D10,D11
typical_cds_rare	Chr3	52477564	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	1	B114
typical_cds_rare	Chr3	52477631	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	1	B102
typical_cds_rare	Chr3	52477672	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	4	A25,B21,C28,C74
typical_cds_rare	Chr3	52477691	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	1	B59
typical_cds_rare	Chr3	52477699	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	1	D11
typical_cds_rare	Chr3	52477718	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	1	B9
typical_cds_rare	Chr3	52477720	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	1	A22
lof_cds	Chr3	52477726	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	142	A1,A10,A11,A13,A14,A15,A16,A23,A4,A5,A6,A7,B1,B10,B101,B102,B103,B106,B107,B108,B109,B11,B111,B112,B113,B115,B118,B119,B124,B126,B127,B129,B13,B130,B132,B134,B135,B136,B137,B140,B15,B16,B18,B20,B22,B23,B24,B25,B26,B28,B29,B3,B30,B32,B33,B34,B37,B38,B39,B40,B41,B45,B46,B47,B48,B49,B5,B50,B54,B55,B56,B57,B59,B6,B60,B61,B62,B63,B64,B69,B7,B70,B72,B73,B74,B76,B79,B80,B81,B85,B86,B88,B89,B9,B90,B92,B96,C10,C12,C13,C15,C18,C24,C25,C27,C3,C33,C35,C37,C38,C39,C4,C40,C41,C45,C48,C50,C52,C53,C56,C58,C6,C63,C65,C67,C7,C73,C74,C76,C78,C79,C8,C84,C86,C87,D1,D2,D3,D4,D5,D6,D9
typical_cds_rare	Chr3	52477727	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	3	B125,C73,D11
typical_cds_rare	Chr3	52477730	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	1	B9
typical_cds_rare	Chr3	52477772	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	2	B6,C34
typical_cds_rare	Chr3	52477803	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	1	B17
typical_cds_rare	Chr3	52477804	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	5	C19,C27,C37,C64,C66
typical_cds_rare	Chr3	52477829	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	2	A20,B44
typical_cds_rare	Chr3	52477842	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	5	C19,C27,C37,C64,C66
typical_cds_rare	Chr3	52477953	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	1	C44
lof_cds	Chr3	52478003	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	8	B11,B127,B130,B67,C16,C45,C46,D3
typical_cds_rare	Chr3	52478025	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	2	D10,D11
typical_cds_rare	Chr3	52478078	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	1	B65
typical_cds_rare	Chr3	52478091	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	2	B17,C83
typical_cds_rare	Chr3	52478131	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	1	B9
typical_cds_rare	Chr3	52478134	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018978	SmilChr03G003414	131018978	rna-XM_057947662.1	1	C44