source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr3	52867271	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	1	C60
typical_cds_rare	Chr3	52867271	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	1	C60
typical_cds_rare	Chr3	52867309	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	2	B125,C73
typical_cds_rare	Chr3	52867311	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	2	A24,B82
typical_cds_rare	Chr3	52867313	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	5	B136,B76,C30,C79,C9
typical_cds_rare	Chr3	52867317	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	3	C27,C64,C66
typical_cds_rare	Chr3	52867318	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	3	B106,B59,B69
typical_cds_rare	Chr3	52867330	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	4	B117,B51,C60,D11
typical_cds_rare	Chr3	52867331	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	3	B21,C28,C74
typical_cds_rare	Chr3	52867353	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	4	B9,C22,C25,D4
lof_cds	Chr3	52867383	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	4	B117,B51,C60,D11
typical_cds_rare	Chr3	52867383	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	4	B117,B51,C60,D11
lof_cds	Chr3	52867384	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	2	C30,C79
typical_cds_rare	Chr3	52867384	GA	G	INDEL	1bp_deletion	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	2	C30,C79
lof_cds	Chr3	52867415	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	53	A1,A13,A23,A4,B10,B101,B106,B107,B108,B11,B12,B120,B122,B13,B139,B15,B2,B29,B3,B33,B35,B36,B37,B47,B54,B55,B57,B66,B78,B83,B84,B86,C14,C17,C22,C29,C30,C35,C38,C40,C41,C45,C5,C56,C59,C6,C7,C70,C75,C76,D1,D10,D3
lof_cds	Chr3	52867416	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	15	A5,A9,B114,B139,B14,B56,B64,B82,B89,B93,B96,C19,C24,C39,C73
typical_cds_rare	Chr3	52867473	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	3	B21,C28,C74
lof_cds	Chr3	52867509	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	4	B117,B51,C60,D11
typical_cds_rare	Chr3	52867509	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	4	B117,B51,C60,D11
typical_cds_rare	Chr3	52867518	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	4	A14,B129,B50,C33
typical_cds_rare	Chr3	52867552	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	1	B128
typical_cds_rare	Chr3	52867563	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	3	B21,C28,C74
typical_cds_rare	Chr3	52867565	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	4	B3,B60,C80,C87
lof_cds	Chr3	52867591	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	156	A1,A10,A13,A14,A16,A18,A19,A20,A23,A24,A25,A3,A4,A6,A7,A8,A9,B1,B10,B100,B101,B103,B104,B105,B108,B11,B112,B114,B118,B12,B121,B123,B125,B127,B13,B130,B133,B134,B136,B137,B138,B14,B140,B15,B16,B2,B23,B26,B27,B3,B30,B34,B39,B41,B42,B43,B46,B47,B51,B54,B55,B56,B59,B6,B60,B61,B62,B64,B65,B66,B67,B68,B69,B7,B71,B72,B73,B75,B76,B77,B78,B80,B83,B84,B86,B87,B88,B9,B91,B94,B95,B97,B98,C10,C11,C12,C14,C20,C21,C24,C25,C27,C28,C29,C3,C30,C32,C34,C36,C38,C39,C40,C42,C44,C45,C48,C49,C5,C52,C53,C54,C55,C57,C58,C59,C6,C61,C62,C64,C65,C66,C68,C69,C7,C72,C73,C74,C76,C77,C78,C79,C8,C80,C81,C82,C83,C84,C86,C87,C9,D10,D11,D2,D4,D6,D8
typical_cds_rare	Chr3	52867615	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	5	B127,B128,B36,C27,C7
lof_cds	Chr3	52867636	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	5	B130,B67,C16,C46,C57
typical_cds_rare	Chr3	52867636	C	CA	INDEL	1bp_insertion	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	5	B130,B67,C16,C46,C57
lof_cds	Chr3	52867642	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	3	B105,B134,B95
typical_cds_rare	Chr3	52867642	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	3	B105,B134,B95
lof_cds	Chr3	52867652	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	4	B105,B134,B95,D9
typical_cds_rare	Chr3	52867652	C	CT	INDEL	1bp_insertion	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	4	B105,B134,B95,D9
typical_cds_rare	Chr3	52867677	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	5	B105,B57,B69,B95,D9
lof_cds	Chr3	52867679	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	174	A1,A13,A15,A16,A2,A20,A21,A22,A23,A24,A25,A3,A5,A6,A7,A9,B1,B10,B101,B103,B106,B107,B108,B109,B11,B112,B114,B115,B117,B119,B12,B120,B122,B124,B127,B128,B13,B130,B131,B134,B135,B136,B137,B139,B14,B15,B17,B18,B19,B2,B20,B22,B23,B24,B25,B26,B28,B29,B3,B30,B32,B33,B34,B35,B36,B37,B40,B41,B42,B43,B44,B45,B47,B49,B51,B53,B54,B56,B57,B6,B60,B61,B62,B63,B64,B65,B66,B67,B7,B70,B71,B72,B73,B74,B76,B77,B78,B8,B80,B81,B82,B84,B85,B86,B88,B89,B93,B94,B95,B96,C14,C15,C16,C17,C18,C19,C2,C22,C24,C26,C27,C29,C3,C30,C31,C32,C35,C36,C37,C38,C39,C40,C41,C43,C45,C46,C48,C49,C5,C50,C51,C53,C56,C57,C58,C59,C6,C62,C63,C64,C65,C66,C67,C68,C7,C70,C71,C73,C75,C76,C78,C79,C81,C84,C86,C87,C9,D1,D10,D11,D3,D5,D6,D9
typical_cds_rare	Chr3	52867691	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	3	B21,C28,C74
typical_cds_rare	Chr3	52867697	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	1	B95
typical_cds_rare	Chr3	52867701	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	4	A1,B21,C28,C74
typical_cds_rare	Chr3	52867706	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	1	C29
typical_cds_rare	Chr3	52867712	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	2	B102,D2
typical_cds_rare	Chr3	52867718	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	1	B23
lof_cds	Chr3	52867721	TTG	T	INDEL	2bp_deletion	frameshift_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	1	B31
typical_cds_rare	Chr3	52867721	TTG	T	INDEL	2bp_deletion	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	1	B31
typical_cds_rare	Chr3	52867731	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	5	B111,B87,B95,C32,C39
typical_cds_rare	Chr3	52867733	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	5	B23,B60,C11,C50,C80
typical_cds_rare	Chr3	52867743	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	3	B12,B86,C29
lof_cds	Chr3	52867759	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	4	B21,C28,C74,D11
typical_cds_rare	Chr3	52867759	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	4	B21,C28,C74,D11
lof_cds	Chr3	52867780	GC	G	INDEL	1bp_deletion	frameshift_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	4	B122,B13,B33,B78
typical_cds_rare	Chr3	52867780	GC	G	INDEL	1bp_deletion	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	4	B122,B13,B33,B78
lof_cds	Chr3	52867781	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	83	A1,A10,A11,A14,A16,A24,A4,A5,A7,A9,B104,B106,B107,B110,B114,B115,B120,B129,B130,B135,B137,B14,B15,B18,B21,B24,B26,B3,B30,B32,B36,B37,B40,B41,B48,B52,B54,B56,B57,B60,B61,B70,B73,B75,B8,B80,B81,B83,B84,B85,B86,B87,B88,B89,B93,B96,B99,C11,C13,C14,C15,C17,C19,C26,C27,C3,C34,C35,C37,C4,C41,C5,C52,C56,C61,C72,C75,C8,C80,C82,D3,D8,D9
lof_cds	Chr3	52867806	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	25	B101,B112,B118,B133,B135,B2,B27,B29,B34,B39,B77,B98,C17,C24,C30,C33,C36,C38,C39,C62,C64,C66,C73,C80,C81
lof_cds	Chr3	52867810	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	5	B1,B103,B114,B55,C49
typical_cds_rare	Chr3	52867810	A	AG	INDEL	1bp_insertion	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	5	B1,B103,B114,B55,C49
typical_cds_rare	Chr3	52867819	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	1	D8
lof_cds	Chr3	52867839	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	4	B9,C22,C25,D4
typical_cds_rare	Chr3	52867839	CA	C	INDEL	1bp_deletion	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	4	B9,C22,C25,D4
typical_cds_rare	Chr3	52867843	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	4	A3,B20,C57,D2
typical_cds_rare	Chr3	52867851	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	4	A3,B103,B27,B74
typical_cds_rare	Chr3	52867859	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	1	A22
typical_cds_rare	Chr3	52867861	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	3	A9,B57,B69
typical_cds_rare	Chr3	52867865	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	2	B131,B99
lof_cds	Chr3	52867867	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	2	B51,C74
typical_cds_rare	Chr3	52867867	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	2	B51,C74
typical_cds_rare	Chr3	52867884	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	1	C82
typical_cds_rare	Chr3	52867885	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	2	B64,C9
lof_cds	Chr3	52867894	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	2	C50,C80
typical_cds_rare	Chr3	52867894	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018986	SmilChr03G003451	131018986	rna-XM_057947671.1	2	C50,C80