source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr3	53911067	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	17	A11,A23,B103,B128,B136,B18,B36,B37,B74,B75,B88,B9,B90,C17,C18,C41,C60
typical_cds_rare	Chr3	53911119	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	2	B19,B69
typical_cds_rare	Chr3	53911169	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	5	B29,B36,B44,C32,D8
lof_cds	Chr3	53911175	GTA	G	INDEL	2bp_deletion	frameshift_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	2	A4,B23
typical_cds_rare	Chr3	53911175	GTA	G	INDEL	2bp_deletion	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	2	A4,B23
typical_cds_rare	Chr3	53911201	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	4	B32,B72,C37,C77
typical_cds_rare	Chr3	53911231	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	4	B2,B81,C18,C83
lof_cds	Chr3	53911234	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	81	A1,A14,A16,A24,A25,A6,A7,A9,B1,B104,B112,B117,B121,B122,B125,B128,B129,B133,B135,B14,B140,B17,B18,B2,B21,B26,B31,B32,B36,B38,B40,B41,B43,B47,B49,B5,B56,B6,B70,B72,B74,B76,B77,B87,B9,B93,B95,B96,B98,B99,C10,C15,C20,C25,C26,C29,C3,C30,C37,C38,C46,C48,C5,C50,C51,C56,C58,C62,C67,C69,C76,C77,C79,C81,C82,C84,C87,C9,D1,D3,D6
typical_cds_rare	Chr3	53911313	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	4	B58,B74,C38,C40
lof_cds	Chr3	53911342	T	TTC	INDEL	2bp_insertion	frameshift_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	3	A19,B46,B49
typical_cds_rare	Chr3	53911342	T	TTC	INDEL	2bp_insertion	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	3	A19,B46,B49
typical_cds_rare	Chr3	53911347	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	1	A21
typical_cds_rare	Chr3	53911351	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	3	B102,B131,C30
lof_cds	Chr3	53911353	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	10	A8,B136,B15,B50,B95,C20,C45,C48,D3,D6
typical_cds_rare	Chr3	53911373	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	1	C48
typical_cds_rare	Chr3	53911441	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	2	A23,B108
typical_cds_rare	Chr3	53911454	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	1	B39
typical_cds_rare	Chr3	53911457	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	1	B123
typical_cds_rare	Chr3	53911464	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	2	B39,D5
lof_cds	Chr3	53911465	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	73	A10,A18,A2,A21,A22,A25,A4,A5,B101,B11,B110,B112,B113,B122,B126,B127,B13,B16,B17,B24,B27,B28,B31,B33,B35,B37,B4,B42,B43,B47,B48,B50,B60,B65,B66,B69,B7,B75,B77,B80,B85,B87,B91,B93,B95,B99,C1,C14,C16,C20,C25,C3,C39,C42,C44,C45,C49,C5,C52,C58,C6,C60,C63,C67,C7,C70,C78,C81,C83,D1,D2,D6,D7
typical_cds_rare	Chr3	53911468	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	3	B45,C70,D2
typical_cds_rare	Chr3	53911476	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	1	C40
lof_cds	Chr3	53911502	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	2	A16,C40
typical_cds_rare	Chr3	53911502	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	2	A16,C40
lof_cds	Chr3	53911503	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	31	A1,A16,A19,B10,B105,B106,B131,B16,B18,B2,B29,B34,B61,B71,B74,B76,B98,C17,C22,C28,C36,C37,C40,C50,C53,C6,C66,C75,C87,D2,D6
typical_cds_rare	Chr3	53911518	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	3	B8,C62,C74
typical_cds_rare	Chr3	53911584	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	3	B126,B29,B76
lof_cds	Chr3	53911612	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	6	A14,B133,B28,B39,C5,C81
typical_cds_rare	Chr3	53911647	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	5	B130,B32,B60,B67,C46
lof_cds	Chr3	53911649	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	7	B102,B60,B63,C29,C39,C52,C70
typical_cds_rare	Chr3	53911657	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	5	B114,B133,B19,B88,B9
lof_cds	Chr3	53911671	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	18	A2,A20,A21,A4,A5,B117,B137,B14,B16,B32,B38,B77,B81,B87,B99,C13,C43,D2
lof_cds	Chr3	53911677	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	14	B135,B43,B53,B56,B58,B6,B77,B9,C18,C2,C32,C42,C52,C62
lof_cds	Chr3	53911687	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	24	A10,A13,A24,A25,B1,B117,B129,B131,B22,B30,B7,B8,B80,B85,B88,B94,B95,C30,C64,C76,C80,C84,D1,D8
typical_cds_rare	Chr3	53911698	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	5	A10,B22,B78,B92,C5
typical_cds_rare	Chr3	53911703	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	3	B106,B5,C85
typical_cds_rare	Chr3	53911713	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	4	A10,B86,C60,D1
lof_cds	Chr3	53911715	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	6	A10,A11,A7,B20,B96,C31
typical_cds_rare	Chr3	53911744	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	3	B121,B17,C42
lof_cds	Chr3	53911749	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	31	A10,A11,A2,A7,A8,B11,B111,B131,B137,B15,B23,B29,B3,B36,B42,B63,B75,B83,B84,B90,C1,C15,C19,C20,C21,C31,C42,C49,C56,C58,C85
typical_cds_rare	Chr3	53911755	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	5	A16,B108,B24,B30,C85
lof_cds	Chr3	53911763	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	3	B132,B8,C71
typical_cds_rare	Chr3	53911763	AT	A	INDEL	1bp_deletion	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	3	B132,B8,C71
lof_cds	Chr3	53911769	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	6	A10,B108,B6,B70,B86,D1
lof_cds	Chr3	53911775	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	12	A1,A10,A13,A22,A24,B43,B55,B59,C37,C64,C78,C8
typical_cds_rare	Chr3	53911781	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	4	B108,B56,C71,D11
typical_cds_rare	Chr3	53911798	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	2	B82,C6
lof_cds	Chr3	53911808	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	8	B113,B138,B51,B86,B99,C38,C59,C7
lof_cds	Chr3	53911813	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	5	B2,B30,B63,B7,B71
typical_cds_rare	Chr3	53911813	AC	A	INDEL	1bp_deletion	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	5	B2,B30,B63,B7,B71
typical_cds_rare	Chr3	53911818	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	5	B123,C17,C4,C65,C87
typical_cds_rare	Chr3	53911845	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	3	C29,C77,C87
typical_cds_rare	Chr3	53911863	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	5	B111,B34,B61,B72,C36
typical_cds_rare	Chr3	53911893	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	3	C13,C48,C81
typical_cds_rare	Chr3	53911900	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	2	C60,D1
typical_cds_rare	Chr3	53911930	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	2	B32,C4
typical_cds_rare	Chr3	53911936	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	4	B108,B45,C17,C48
typical_cds_rare	Chr3	53911973	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	4	B46,B97,C33,C46
lof_cds	Chr3	53911984	CAT	C	INDEL	2bp_deletion	frameshift_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	34	A18,B12,B14,B16,B18,B24,B25,B28,B34,B36,B37,B41,B42,B43,B45,B46,B58,B69,B71,B73,B87,B89,B93,B94,B97,C10,C37,C38,C46,C57,C70,C79,C8,D2
lof_cds	Chr3	53911995	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	10	A19,B121,B124,B131,B136,B26,B95,B98,C43,C52
typical_cds_rare	Chr3	53911997	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	2	B71,B8
typical_cds_rare	Chr3	53912000	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	5	B139,B46,B59,C27,C60
typical_cds_rare	Chr3	53912010	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	2	A16,C71
typical_cds_rare	Chr3	53912025	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	2	A9,B137
typical_cds_rare	Chr3	53912028	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	1	D8
typical_cds_rare	Chr3	53912035	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	3	B22,B44,C5
typical_cds_rare	Chr3	53912041	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	1	C14
typical_cds_rare	Chr3	53912044	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	1	B1
lof_cds	Chr3	53912140	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	85	A15,A2,A22,A25,A4,A9,B1,B10,B100,B106,B109,B11,B112,B113,B119,B12,B121,B122,B124,B127,B13,B138,B16,B17,B19,B21,B29,B35,B37,B38,B39,B42,B49,B5,B54,B55,B57,B64,B73,B75,B78,B79,B82,B84,B86,B87,B89,B91,B99,C11,C12,C13,C16,C21,C23,C26,C27,C28,C3,C34,C35,C36,C37,C39,C4,C40,C45,C46,C48,C49,C55,C60,C61,C63,C64,C66,C67,C69,C74,C80,C82,C84,C86,D10,D11
typical_cds_rare	Chr3	53912183	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	1	B115
typical_cds_rare	Chr3	53912238	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	4	A11,B86,C70,C77
typical_cds_rare	Chr3	53912241	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	5	B11,B123,B13,C29,C83
typical_cds_rare	Chr3	53912278	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	1	C59
typical_cds_rare	Chr3	53912279	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	3	B132,B91,C52
typical_cds_rare	Chr3	53912337	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	3	B115,C10,C59
typical_cds_rare	Chr3	53912359	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	5	A22,B40,B43,B78,D3
lof_cds	Chr3	53912391	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	5	B20,B22,B26,C5,C54
typical_cds_rare	Chr3	53912391	G	GA	INDEL	1bp_insertion	CDS_variant	LOC131018995	SmilChr03G003530	131018995	rna-XM_057947681.1	5	B20,B22,B26,C5,C54