source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr3	54183854	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019001	SmilChr03G003554	131019001	rna-XM_057947687.1	1	B55
typical_cds_rare	Chr3	54183882	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019001	SmilChr03G003554	131019001	rna-XM_057947687.1	5	A5,B23,B80,C15,C19
lof_cds	Chr3	54183884	AGG	A	INDEL	2bp_deletion	frameshift_variant	LOC131019001	SmilChr03G003554	131019001	rna-XM_057947687.1	18	A1,A25,B11,B117,B131,B42,B56,B57,B58,B78,B9,C13,C23,C29,C54,C57,C86,D8
lof_cds	Chr3	54183888	A	ACC	INDEL	2bp_insertion	frameshift_variant	LOC131019001	SmilChr03G003554	131019001	rna-XM_057947687.1	18	A1,A25,B11,B117,B131,B42,B56,B57,B58,B78,B9,C13,C23,C29,C54,C57,C86,D8
typical_cds_rare	Chr3	54183919	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019001	SmilChr03G003554	131019001	rna-XM_057947687.1	3	C17,C28,C73
lof_cds	Chr3	54183929	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131019001	SmilChr03G003554	131019001	rna-XM_057947687.1	1	C16
typical_cds_rare	Chr3	54183929	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019001	SmilChr03G003554	131019001	rna-XM_057947687.1	1	C16
lof_cds	Chr3	54183935	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131019001	SmilChr03G003554	131019001	rna-XM_057947687.1	31	A21,B100,B102,B103,B115,B126,B128,B130,B24,B30,B33,B35,B42,B43,B57,B60,B66,B73,B78,B80,C16,C18,C3,C31,C35,C45,C49,C52,C53,C86,D2
lof_cds	Chr3	54183946	G	GT	INDEL	1bp_insertion	frameshift_variant	LOC131019001	SmilChr03G003554	131019001	rna-XM_057947687.1	3	B4,B51,B97
typical_cds_rare	Chr3	54183946	G	GT	INDEL	1bp_insertion	CDS_variant	LOC131019001	SmilChr03G003554	131019001	rna-XM_057947687.1	3	B4,B51,B97
lof_cds	Chr3	54184774	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131019001	SmilChr03G003554	131019001	rna-XM_057947687.1	4	A10,B125,B17,B21
typical_cds_rare	Chr3	54184774	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019001	SmilChr03G003554	131019001	rna-XM_057947687.1	4	A10,B125,B17,B21
typical_cds_rare	Chr3	54184805	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019001	SmilChr03G003554	131019001	rna-XM_057947687.1	3	B66,C5,C82
typical_cds_rare	Chr3	54184831	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019001	SmilChr03G003554	131019001	rna-XM_057947687.1	4	A18,B20,C24,C51
typical_cds_rare	Chr3	54184917	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019001	SmilChr03G003554	131019001	rna-XM_057947687.1	3	C51,C64,C81
typical_cds_rare	Chr3	54184918	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019001	SmilChr03G003554	131019001	rna-XM_057947687.1	2	A14,C32
typical_cds_rare	Chr3	54184922	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019001	SmilChr03G003554	131019001	rna-XM_057947687.1	1	B125
lof_cds	Chr3	54184960	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131019001	SmilChr03G003554	131019001	rna-XM_057947687.1	24	A7,B101,B131,B134,B135,B18,B22,B37,B41,B69,B73,B9,B91,B93,B94,B98,C13,C30,C52,C57,C59,C61,D5,D9
lof_cds	Chr3	54184961	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC131019001	SmilChr03G003554	131019001	rna-XM_057947687.1	6	B20,C24,C51,C64,C81,D8
typical_cds_rare	Chr3	54184980	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019001	SmilChr03G003554	131019001	rna-XM_057947687.1	1	B125
lof_cds	Chr3	54185038	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131019001	SmilChr03G003554	131019001	rna-XM_057947687.1	17	A4,B101,B107,B123,B23,B28,B36,B38,B57,B79,C21,C32,C45,C57,C61,C62,C85
typical_cds_rare	Chr3	54185092	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019001	SmilChr03G003554	131019001	rna-XM_057947687.1	1	B53
typical_cds_rare	Chr3	54185094	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019001	SmilChr03G003554	131019001	rna-XM_057947687.1	4	B121,B87,C76,D7
typical_cds_rare	Chr3	54185102	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019001	SmilChr03G003554	131019001	rna-XM_057947687.1	1	C72
typical_cds_rare	Chr3	54185119	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019001	SmilChr03G003554	131019001	rna-XM_057947687.1	1	B53