source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr3	54831917	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	4	A23,B2,B84,C76
typical_cds_rare	Chr3	54831917	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	4	A23,B2,B84,C76
typical_cds_rare	Chr3	54831948	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	2	B110,C20
typical_cds_rare	Chr3	54831972	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	1	B38
lof_cds	Chr3	54831977	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	30	B102,B107,B11,B115,B125,B128,B13,B130,B134,B14,B17,B18,B24,B31,B36,B38,B41,B42,B52,B72,B77,B81,B82,B92,C1,C12,C20,C23,C24,C82
lof_cds	Chr3	54831979	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	1	B26
typical_cds_rare	Chr3	54831979	GT	G	INDEL	1bp_deletion	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	1	B26
typical_cds_rare	Chr3	54831995	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	2	B22,B46
typical_cds_rare	Chr3	54831996	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	3	B18,B99,C82
typical_cds_rare	Chr3	54831998	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	3	A19,B17,B84
lof_cds	Chr3	54832004	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	2	B22,B46
typical_cds_rare	Chr3	54832004	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	2	B22,B46
typical_cds_rare	Chr3	54832013	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	2	B110,C20
lof_cds	Chr3	54832058	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	1	B35
typical_cds_rare	Chr3	54832058	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	1	B35
lof_cds	Chr3	54832070	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	17	A14,A20,A25,A3,A5,B123,B13,B134,B24,B48,B81,C14,C34,C4,C70,D1,D9
lof_cds	Chr3	54832148	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	15	A13,A4,A7,B105,B135,C19,C28,C44,C45,C59,C67,C71,C80,C85,D10
lof_cds	Chr3	54832173	T	TAC	INDEL	2bp_insertion	frameshift_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	3	A5,B65,C71
typical_cds_rare	Chr3	54832173	T	TAC	INDEL	2bp_insertion	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	3	A5,B65,C71
typical_cds_rare	Chr3	54832176	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	2	B84,B90
typical_cds_rare	Chr3	54832229	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	2	B140,D1
lof_cds	Chr3	54832236	T	TTA	INDEL	2bp_insertion	frameshift_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	2	B140,D1
typical_cds_rare	Chr3	54832236	T	TTA	INDEL	2bp_insertion	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	2	B140,D1
lof_cds	Chr3	54832238	TCG	T	INDEL	2bp_deletion	frameshift_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	2	B140,D1
typical_cds_rare	Chr3	54832238	TCG	T	INDEL	2bp_deletion	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	2	B140,D1
typical_cds_rare	Chr3	54832294	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	5	B102,B127,B130,B67,C46
typical_cds_rare	Chr3	54832323	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	1	B66
typical_cds_rare	Chr3	54832339	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	1	B131
typical_cds_rare	Chr3	54832340	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	1	B131
typical_cds_rare	Chr3	54832353	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	3	B109,B72,C46
lof_cds	Chr3	54832363	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	32	A5,B101,B108,B120,B122,B24,B25,B28,B32,B35,B40,B46,B48,B6,B64,B91,B99,C16,C21,C23,C24,C27,C32,C34,C68,C72,C73,C78,C8,D10,D3,D7
lof_cds	Chr3	54832407	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	5	B135,B25,B29,C63,D3
typical_cds_rare	Chr3	54832407	AC	A	INDEL	1bp_deletion	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	5	B135,B25,B29,C63,D3
lof_cds	Chr3	54832413	CGA	C	INDEL	2bp_deletion	frameshift_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	7	B135,B25,B26,B29,C43,C63,D3
lof_cds	Chr3	54832424	T	TCA	INDEL	2bp_insertion	frameshift_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	7	B135,B25,B26,B29,C43,C63,D3
lof_cds	Chr3	54832453	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	9	A10,B25,B29,B51,C16,C40,C43,C63,D3
typical_cds_rare	Chr3	54832456	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	4	B127,B130,B67,C46
lof_cds	Chr3	54832457	A	AC	INDEL	1bp_insertion	frameshift_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	11	A10,B25,B29,B51,C16,C40,C43,C63,C78,C85,D3
typical_cds_rare	Chr3	54832460	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	5	B127,B130,B67,C46,C63
lof_cds	Chr3	54832486	G	GT	INDEL	1bp_insertion	frameshift_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	13	A10,B25,B29,B51,C16,C25,C32,C40,C43,C63,C78,C85,D3
lof_cds	Chr3	54832489	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	13	A10,B25,B29,B51,C16,C25,C32,C40,C43,C63,C78,C85,D3
lof_cds	Chr3	54832542	TAG	T	INDEL	2bp_deletion	frameshift_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	20	A1,A10,A14,B10,B113,B25,B51,B53,B67,B72,B74,B8,B90,C14,C16,C25,C43,C63,C78,D3
lof_cds	Chr3	54832547	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	19	A1,A10,A14,B10,B113,B25,B51,B53,B72,B74,B8,B90,C14,C16,C25,C43,C63,C78,D3
lof_cds	Chr3	54832549	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	19	A1,A10,A14,B10,B113,B25,B51,B53,B72,B74,B8,B90,C14,C16,C25,C43,C63,C78,D3
lof_cds	Chr3	54832588	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	1	C72
typical_cds_rare	Chr3	54832588	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	1	C72
lof_cds	Chr3	54832591	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	1	C62
typical_cds_rare	Chr3	54832591	TC	T	INDEL	1bp_deletion	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	1	C62
typical_cds_rare	Chr3	54832607	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	2	A4,D2
lof_cds	Chr3	54832618	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	16	A1,A14,A23,B135,B25,C10,C16,C27,C36,C49,C53,C55,C62,D1,D2,D3
lof_cds	Chr3	54832630	GC	G	INDEL	1bp_deletion	frameshift_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	23	A10,A9,B112,B114,B121,B132,B14,B44,B51,B52,B56,B77,B82,B89,B96,C12,C21,C40,C41,C51,C82,C9,D4
lof_cds	Chr3	54832633	T	TTG	INDEL	2bp_insertion	stop_gained,frameshift_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	19	A1,A14,A23,B120,B135,B25,B80,C10,C16,C27,C36,C49,C53,C55,C62,C73,D1,D2,D3
lof_cds	Chr3	54832644	ATG	A	INDEL	2bp_deletion	frameshift_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	1	B10
typical_cds_rare	Chr3	54832644	ATG	A	INDEL	2bp_deletion	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	1	B10
typical_cds_rare	Chr3	54832720	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	4	C32,C68,C71,D10
typical_cds_rare	Chr3	54832752	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	5	A4,B10,B134,C27,D2
typical_cds_rare	Chr3	54832803	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	1	C40
lof_cds	Chr3	54832827	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	4	B80,C27,C53,C73
typical_cds_rare	Chr3	54832827	AT	A	INDEL	1bp_deletion	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	4	B80,C27,C53,C73
lof_cds	Chr3	54832829	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	4	B80,C27,C53,C73
typical_cds_rare	Chr3	54832829	GA	G	INDEL	1bp_deletion	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	4	B80,C27,C53,C73
lof_cds	Chr3	54832831	T	TCC	INDEL	2bp_insertion	frameshift_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	4	B80,C27,C53,C73
typical_cds_rare	Chr3	54832831	T	TCC	INDEL	2bp_insertion	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	4	B80,C27,C53,C73
lof_cds	Chr3	54832837	GAA	G	INDEL	2bp_deletion	frameshift_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	3	B80,C27,C53
typical_cds_rare	Chr3	54832837	GAA	G	INDEL	2bp_deletion	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	3	B80,C27,C53
lof_cds	Chr3	54832842	G	GT	INDEL	1bp_insertion	frameshift_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	3	B80,C27,C53
typical_cds_rare	Chr3	54832842	G	GT	INDEL	1bp_insertion	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	3	B80,C27,C53
lof_cds	Chr3	54832843	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	3	B80,C27,C53
typical_cds_rare	Chr3	54832843	C	CT	INDEL	1bp_insertion	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	3	B80,C27,C53
lof_cds	Chr3	54832854	A	AC	INDEL	1bp_insertion	frameshift_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	2	B80,C27
typical_cds_rare	Chr3	54832854	A	AC	INDEL	1bp_insertion	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	2	B80,C27
typical_cds_rare	Chr3	54832865	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	3	C32,C68,D10
typical_cds_rare	Chr3	54832870	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	4	B127,B130,B67,C46
typical_cds_rare	Chr3	54832886	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	1	D10
typical_cds_rare	Chr3	54832944	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	2	B6,C34
typical_cds_rare	Chr3	54832970	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	1	B4
typical_cds_rare	Chr3	54832996	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	4	A4,B118,B86,C30
typical_cds_rare	Chr3	54833115	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	2	B76,C23
typical_cds_rare	Chr3	54833121	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019014	SmilChr03G003616	131019014	rna-XM_057947701.1	2	B76,C23