source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr3	56993557	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	1	B135
lof_cds	Chr3	56993559	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	19	A9,B102,B105,B11,B12,B123,B131,B132,B133,B46,B53,B55,B63,C14,C29,C31,C37,C44,C51
typical_cds_rare	Chr3	56993571	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	5	A16,B58,B64,C13,C50
typical_cds_rare	Chr3	56993681	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	1	C54
typical_cds_rare	Chr3	56993688	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	1	B95
typical_cds_rare	Chr3	56993695	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	5	B112,B117,B16,C59,D8
typical_cds_rare	Chr3	56993719	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	3	A9,B96,C83
typical_cds_rare	Chr3	56993727	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	1	B26
typical_cds_rare	Chr3	56993800	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	2	B58,B64
typical_cds_rare	Chr3	56993896	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	1	C44
typical_cds_rare	Chr3	56993931	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	3	B20,B90,C77
typical_cds_rare	Chr3	56993932	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	2	B4,C14
typical_cds_rare	Chr3	56993967	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	3	B131,C29,C37
typical_cds_rare	Chr3	56993968	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	2	B4,C14
typical_cds_rare	Chr3	56993993	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	1	B10
typical_cds_rare	Chr3	56994066	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	2	B75,C54
typical_cds_rare	Chr3	56994082	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	3	B85,C41,C81
typical_cds_rare	Chr3	56994114	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	2	B42,B43
typical_cds_rare	Chr3	56994139	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	1	D3
typical_cds_rare	Chr3	56994208	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	1	C25
typical_cds_rare	Chr3	56994224	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	5	B109,B140,B46,C29,C51
typical_cds_rare	Chr3	56994333	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	4	B109,B19,C33,C8
typical_cds_rare	Chr3	56994379	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	5	A3,B108,B19,B8,B85
typical_cds_rare	Chr3	56994397	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	2	B75,C54
typical_cds_rare	Chr3	56994465	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	1	D2
lof_cds	Chr3	56994486	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	36	A20,A3,A8,B103,B106,B114,B120,B126,B137,B15,B19,B21,B25,B27,B33,B46,B51,B52,B6,B66,B69,B72,B99,C1,C16,C17,C19,C25,C26,C34,C45,C5,C51,C7,D7,D8
lof_cds	Chr3	56994507	AAC	A	INDEL	2bp_deletion	frameshift_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	19	A18,A7,B102,B105,B109,B131,B132,B133,B22,B46,B53,B63,B89,B94,C14,C29,C31,C37,C51
lof_cds	Chr3	56994513	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	20	A18,A7,B102,B105,B109,B131,B132,B133,B140,B22,B46,B53,B63,B89,B94,C14,C29,C31,C37,C51
lof_cds	Chr3	56994534	CG	C	INDEL	1bp_deletion	frameshift_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	22	A18,A7,B102,B105,B109,B12,B131,B132,B133,B140,B22,B46,B53,B55,B63,B89,B94,C14,C29,C31,C37,C51
typical_cds_rare	Chr3	56994557	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	5	B123,B14,C40,C7,C71
typical_cds_rare	Chr3	56994614	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	3	B85,C41,C81
typical_cds_rare	Chr3	56994676	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	5	A4,B85,C41,C44,C81
typical_cds_rare	Chr3	56994705	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	2	C38,C8
lof_cds	Chr3	56998406	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	2	B5,B75
typical_cds_rare	Chr3	56998406	AG	A	INDEL	1bp_deletion	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	2	B5,B75
lof_cds	Chr3	56998520	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942689.1	25	A9,B102,B105,B109,B12,B123,B131,B132,B133,B140,B22,B27,B46,B53,B58,B63,B68,B89,B94,C29,C37,C40,C44,C7,C71
lof_cds	Chr3	56998521	A	AAT	INDEL	2bp_insertion	frameshift_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942689.1	26	A9,B102,B105,B109,B12,B123,B131,B132,B133,B140,B22,B27,B46,B53,B58,B63,B68,B89,B94,C29,C37,C38,C40,C44,C7,C71
lof_cds	Chr3	56998523	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942689.1	28	A13,A18,A19,A3,A7,A9,B108,B122,B13,B130,B134,B2,B34,B4,B40,B46,B73,B75,B8,B97,C23,C38,C40,C48,C50,C55,C74,C83
lof_cds	Chr3	56998540	TAA	T	INDEL	2bp_deletion	frameshift_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942689.1	4	A9,B2,B56,C50
typical_cds_rare	Chr3	56998540	TAA	T	INDEL	2bp_deletion	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942689.1	4	A9,B2,B56,C50
typical_cds_rare	Chr3	56998570	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942689.1	2	B47,B62
typical_cds_rare	Chr3	56998603	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942689.1	5	A9,B2,B56,C38,C50
typical_cds_rare	Chr3	56998617	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942689.1	1	B10
lof_cds	Chr3	57001076	AAG	A	INDEL	2bp_deletion	frameshift_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942689.1	2	B10,B75
typical_cds_rare	Chr3	57001076	AAG	A	INDEL	2bp_deletion	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942689.1	2	B10,B75
lof_cds	Chr3	57001554	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1	38	A19,A6,A7,B101,B117,B121,B122,B124,B17,B18,B24,B35,B38,B40,B5,B63,B73,B79,B81,B83,B91,B98,C11,C13,C32,C36,C39,C46,C59,C68,C69,C74,C75,C76,C80,C9,D10,D8
lof_cds	Chr3	57001558	GCT	G	INDEL	2bp_deletion	frameshift_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	3	B2,B56,C83
typical_cds_rare	Chr3	57001558	GCT	G	INDEL	2bp_deletion	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	3	B2,B56,C83
lof_cds	Chr3	57001561	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1,rna-XM_057942689.1	40	A19,A6,A7,B101,B117,B121,B122,B124,B17,B24,B34,B35,B38,B39,B40,B5,B64,B73,B79,B81,B83,B91,B98,C11,C13,C32,C36,C39,C46,C52,C59,C68,C69,C74,C75,C76,C80,C9,D10,D8
typical_cds_rare	Chr3	57001597	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1	1	B93
typical_cds_rare	Chr3	57001608	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1	3	B86,C82,D4
typical_cds_rare	Chr3	57001610	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1	2	C43,C79
lof_cds	Chr3	57001687	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1	204	A10,A13,A15,A16,A18,A19,A2,A20,A22,A23,A24,A3,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B105,B106,B107,B108,B109,B11,B111,B112,B113,B114,B117,B118,B119,B12,B120,B121,B122,B123,B124,B126,B127,B13,B131,B132,B133,B134,B135,B137,B138,B139,B14,B140,B15,B16,B17,B19,B2,B21,B22,B24,B26,B27,B29,B3,B30,B31,B32,B33,B34,B36,B37,B38,B39,B40,B44,B45,B46,B48,B49,B5,B50,B51,B52,B53,B54,B56,B57,B58,B6,B61,B62,B63,B64,B65,B66,B68,B69,B7,B71,B72,B73,B74,B75,B76,B77,B79,B8,B81,B82,B83,B84,B85,B86,B88,B9,B91,B93,B94,B95,B98,B99,C1,C10,C11,C13,C14,C15,C16,C17,C19,C21,C22,C23,C24,C25,C26,C27,C29,C30,C31,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C43,C44,C45,C46,C48,C49,C5,C51,C53,C54,C55,C56,C57,C58,C59,C6,C62,C63,C64,C65,C66,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C78,C79,C80,C81,C82,C84,C85,C86,C87,C9,D1,D10,D2,D3,D4,D7,D8,D9
lof_cds	Chr3	57001689	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1	202	A10,A13,A15,A16,A18,A19,A2,A20,A22,A23,A24,A3,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B105,B106,B107,B108,B109,B11,B111,B112,B113,B114,B117,B118,B119,B12,B120,B121,B122,B123,B124,B126,B127,B13,B131,B132,B133,B134,B135,B137,B138,B139,B14,B140,B15,B16,B17,B19,B2,B21,B22,B24,B26,B27,B29,B3,B30,B31,B32,B33,B36,B37,B38,B39,B40,B44,B45,B46,B48,B49,B5,B50,B51,B52,B53,B54,B56,B57,B58,B6,B61,B62,B63,B64,B65,B66,B68,B69,B7,B71,B72,B73,B74,B75,B76,B77,B79,B8,B81,B82,B83,B84,B85,B86,B88,B9,B91,B93,B94,B95,B98,B99,C1,C10,C11,C13,C14,C15,C16,C17,C19,C21,C22,C23,C24,C25,C26,C27,C29,C30,C31,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C43,C44,C45,C46,C48,C49,C5,C51,C53,C54,C55,C56,C57,C58,C59,C6,C62,C63,C64,C65,C66,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C78,C79,C80,C82,C84,C85,C86,C87,C9,D1,D10,D2,D3,D4,D7,D8,D9
lof_cds	Chr3	57001722	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1	11	A15,A19,A7,B1,B30,B73,B93,C53,C55,C57,C74
lof_cds	Chr3	57001726	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1	9	A22,C18,C25,C45,C60,C61,C8,C81,D3
typical_cds_rare	Chr3	57001814	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1	1	C25
typical_cds_rare	Chr3	57001816	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1	1	B135
lof_cds	Chr3	57001827	CAT	C	INDEL	2bp_deletion	frameshift_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1	3	B23,C11,C17
typical_cds_rare	Chr3	57001827	CAT	C	INDEL	2bp_deletion	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1	3	B23,C11,C17
lof_cds	Chr3	57001877	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1	138	A10,A11,A13,A16,A18,A19,A2,A20,A22,A23,A24,A3,A6,A7,A8,B1,B10,B100,B101,B102,B103,B106,B108,B11,B111,B112,B113,B114,B118,B119,B120,B122,B124,B126,B127,B132,B134,B136,B137,B139,B14,B15,B17,B19,B21,B22,B25,B27,B28,B30,B31,B33,B34,B36,B37,B38,B39,B40,B44,B49,B5,B50,B51,B52,B54,B57,B58,B59,B6,B61,B62,B64,B65,B66,B69,B71,B72,B73,B74,B77,B79,B81,B82,B84,B86,B88,B9,B93,B95,B97,B99,C1,C11,C15,C16,C17,C19,C21,C22,C23,C25,C26,C27,C33,C34,C35,C36,C4,C40,C43,C45,C46,C48,C5,C51,C52,C53,C6,C60,C65,C69,C7,C71,C74,C79,C8,C80,C83,C84,C85,C86,C87,D11,D3,D4,D7,D8,D9
lof_cds	Chr3	57001975	G	GC	INDEL	1bp_insertion	frameshift_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1	4	A16,B64,C27,C52
typical_cds_rare	Chr3	57001975	G	GC	INDEL	1bp_insertion	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1	4	A16,B64,C27,C52
lof_cds	Chr3	57001978	G	GGA	INDEL	2bp_insertion	frameshift_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1	15	B104,B108,B128,B134,B16,B41,B42,B43,B47,B91,B97,C28,C43,C48,D9
lof_cds	Chr3	57002021	A	AC	INDEL	1bp_insertion	frameshift_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1	14	B108,B126,B128,B134,B16,B41,B42,B43,B47,B91,B97,C43,C48,D9
lof_cds	Chr3	57002024	T	TC	INDEL	1bp_insertion	stop_gained,frameshift_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1	14	B108,B126,B128,B134,B16,B41,B42,B43,B47,B91,B97,C43,C48,D9
lof_cds	Chr3	57002032	G	GC	INDEL	1bp_insertion	frameshift_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1	14	B108,B126,B128,B134,B16,B41,B42,B43,B47,B91,B97,C43,C48,D9
typical_cds_rare	Chr3	57002101	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1	1	B2
typical_cds_rare	Chr3	57002119	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1	2	A1,B108
typical_cds_rare	Chr3	57002126	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1	1	C37
typical_cds_rare	Chr3	57002137	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1	1	D10
lof_cds	Chr3	57002214	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1	1	B4
typical_cds_rare	Chr3	57002214	T	TG	INDEL	1bp_insertion	CDS_variant	LOC131014646	SmilChr03G003790	131014646	rna-XM_057942687.1,rna-XM_057942688.1	1	B4