source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr3	58222705	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	63	A19,A6,A8,B111,B112,B117,B119,B129,B132,B135,B137,B14,B15,B20,B22,B25,B27,B34,B36,B37,B41,B47,B49,B51,B54,B57,B62,B65,B68,B74,B77,B8,B82,B84,B86,B97,B99,C10,C12,C14,C17,C18,C19,C2,C26,C37,C38,C39,C42,C44,C46,C51,C55,C60,C71,C77,C80,C82,C84,C87,C9,D1,D9
lof_cds	Chr3	58222711	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	6	A2,B110,B4,C25,C5,D5
lof_cds	Chr3	58222717	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	36	A24,B1,B103,B109,B114,B121,B127,B128,B23,B38,B39,B4,B47,B5,B50,B53,B62,B7,B70,B78,B87,B89,B94,C1,C14,C24,C28,C31,C4,C46,C5,C53,C61,C65,C77,D6
lof_cds	Chr3	58222746	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	28	A10,A14,A21,B1,B100,B101,B12,B139,B2,B35,B49,B56,B6,B65,B79,B9,B96,C11,C27,C39,C45,C50,C58,C67,C69,C72,C85,D2
typical_cds_rare	Chr3	58222809	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	3	B47,B84,C24
typical_cds_rare	Chr3	58222856	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	5	B138,B41,B48,B75,C78
lof_cds	Chr3	58222857	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	125	A1,A11,A13,A19,A22,A24,A25,A4,A5,A7,A8,A9,B10,B102,B103,B104,B105,B106,B108,B11,B113,B115,B118,B120,B121,B125,B127,B128,B130,B131,B134,B138,B139,B16,B17,B19,B21,B23,B25,B27,B28,B29,B30,B31,B32,B34,B36,B38,B40,B42,B43,B44,B45,B46,B48,B5,B53,B55,B57,B59,B60,B64,B67,B68,B69,B72,B73,B74,B76,B8,B80,B83,B85,B90,B92,B95,B97,C15,C16,C20,C21,C22,C23,C27,C28,C29,C32,C33,C35,C36,C37,C38,C4,C40,C41,C42,C43,C45,C49,C51,C52,C54,C56,C57,C59,C6,C65,C68,C69,C7,C70,C71,C73,C74,C75,C81,C83,C84,C86,C87,D10,D4,D5,D6,D7
typical_cds_rare	Chr3	58222874	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	2	A13,A22
lof_cds	Chr3	58222882	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	4	B127,B62,C14,D6
typical_cds_rare	Chr3	58222882	G	GA	INDEL	1bp_insertion	CDS_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	4	B127,B62,C14,D6
lof_cds	Chr3	58222883	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	4	B127,B62,C14,D6
typical_cds_rare	Chr3	58222883	T	TA	INDEL	1bp_insertion	CDS_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	4	B127,B62,C14,D6
lof_cds	Chr3	58222935	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	94	A11,A13,A14,A15,A18,A2,A23,A24,A5,A6,A7,A8,A9,B1,B10,B101,B107,B111,B113,B115,B117,B12,B120,B126,B133,B136,B140,B15,B17,B2,B20,B22,B23,B26,B27,B3,B31,B34,B36,B38,B39,B43,B46,B49,B5,B51,B54,B60,B62,B63,B64,B65,B75,B81,B84,B86,B90,B92,B93,B95,B99,C13,C15,C16,C18,C21,C28,C3,C32,C35,C38,C39,C43,C45,C46,C47,C53,C57,C64,C65,C67,C69,C7,C74,C75,C78,C80,C85,C87,D1,D11,D5,D6,D8
lof_cds	Chr3	58222947	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	9	B110,B115,B13,B15,B66,B83,C3,C79,C9
lof_cds	Chr3	58222948	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	110	A1,A11,A13,A22,A24,A4,A5,A7,A8,A9,B10,B100,B102,B104,B105,B106,B108,B11,B113,B115,B118,B120,B121,B125,B128,B130,B131,B134,B138,B139,B16,B17,B19,B21,B23,B27,B28,B29,B30,B31,B32,B34,B38,B39,B40,B42,B43,B44,B45,B46,B48,B5,B53,B55,B57,B59,B60,B67,B68,B69,B72,B73,B74,B76,B77,B83,B85,B88,B90,B92,B95,B97,C1,C15,C16,C20,C21,C22,C23,C28,C29,C32,C35,C37,C4,C40,C41,C42,C43,C45,C51,C52,C54,C56,C57,C59,C68,C69,C71,C73,C74,C75,C81,C83,C84,C86,C87,D4,D5,D7
typical_cds_rare	Chr3	58223012	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	4	A2,B70,C5,C7
typical_cds_rare	Chr3	58223016	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	2	A4,B52
lof_cds	Chr3	58223029	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	7	B138,B47,B69,B80,C24,C83,D3
lof_cds	Chr3	58223052	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	4	B19,B9,C25,C57
typical_cds_rare	Chr3	58223052	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	4	B19,B9,C25,C57
lof_cds	Chr3	58223071	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	9	B127,B132,B37,B47,B62,B63,B89,C14,D6
lof_cds	Chr3	58223075	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	14	A10,A3,A6,B103,B123,B43,C29,C4,C48,C54,C6,C81,C9,D9
lof_cds	Chr3	58223086	CGA	C	INDEL	2bp_deletion	frameshift_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	27	A1,A7,A8,B10,B105,B106,B120,B125,B130,B139,B25,B40,B45,B73,B74,B80,B88,B93,C15,C22,C37,C38,C40,C52,C74,C83,D4
lof_cds	Chr3	58223091	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	12	A18,B3,B58,B80,B93,C19,C3,C64,C66,C78,C81,D8
typical_cds_rare	Chr3	58223158	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	4	B132,B37,B63,B89
typical_cds_rare	Chr3	58223161	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	5	B19,B9,C22,C25,C57
lof_cds	Chr3	58223171	TGG	T	INDEL	2bp_deletion	frameshift_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	4	B47,B62,C14,D6
typical_cds_rare	Chr3	58223171	TGG	T	INDEL	2bp_deletion	CDS_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	4	B47,B62,C14,D6
lof_cds	Chr3	58223173	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	30	A24,B1,B103,B109,B114,B121,B128,B23,B38,B39,B4,B5,B50,B53,B7,B70,B78,B87,B89,B94,C1,C24,C28,C4,C46,C5,C53,C61,C65,C77
typical_cds_rare	Chr3	58223235	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	1	B64
typical_cds_rare	Chr3	58223248	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	1	D6
typical_cds_rare	Chr3	58223264	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	1	D11
typical_cds_rare	Chr3	58223297	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	3	B130,B67,C41
typical_cds_rare	Chr3	58223317	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	1	C83
typical_cds_rare	Chr3	58223321	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	2	B103,C41
lof_cds	Chr3	58223336	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	6	B132,B37,B63,B73,B89,C43
typical_cds_rare	Chr3	58223337	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	1	B10
typical_cds_rare	Chr3	58223393	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	2	C58,C60
lof_cds	Chr3	58223413	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	4	A14,B100,C26,C72
typical_cds_rare	Chr3	58223413	A	AT	INDEL	1bp_insertion	CDS_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	4	A14,B100,C26,C72
typical_cds_rare	Chr3	58223434	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	5	B103,B30,B95,C29,C51
lof_cds	Chr3	58223443	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	1	C76
typical_cds_rare	Chr3	58223443	C	CT	INDEL	1bp_insertion	CDS_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	1	C76
lof_cds	Chr3	58223444	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	23	B1,B109,B114,B128,B23,B38,B39,B5,B7,B78,B87,B89,B94,C1,C24,C28,C31,C4,C46,C5,C61,C65,C77
typical_cds_rare	Chr3	58223455	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	2	B84,C41
typical_cds_rare	Chr3	58223461	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	2	B39,C20
lof_cds	Chr3	58223497	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	7	A3,B107,B112,B54,B76,C63,C79
typical_cds_rare	Chr3	58223501	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	2	B84,C41
typical_cds_rare	Chr3	58223512	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	2	B84,C41
typical_cds_rare	Chr3	58223513	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	5	B19,B9,C22,C25,C57
typical_cds_rare	Chr3	58223516	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	5	B65,B95,C23,C50,C51
typical_cds_rare	Chr3	58223535	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	2	A21,B127
lof_cds	Chr3	58223540	T	TAC	INDEL	2bp_insertion	frameshift_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	2	B84,C41
typical_cds_rare	Chr3	58223540	T	TAC	INDEL	2bp_insertion	CDS_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	2	B84,C41
typical_cds_rare	Chr3	58223556	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	5	B127,B47,B62,C14,D6
lof_cds	Chr3	58223567	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	124	A1,A11,A13,A19,A24,A25,A4,A7,A8,A9,B10,B100,B102,B104,B105,B106,B108,B11,B115,B118,B120,B121,B125,B127,B130,B131,B134,B137,B138,B139,B16,B17,B19,B23,B25,B27,B28,B30,B31,B32,B34,B35,B36,B38,B39,B40,B42,B43,B44,B45,B48,B5,B53,B55,B57,B59,B60,B64,B67,B68,B69,B73,B74,B76,B77,B8,B80,B83,B85,B87,B88,B90,B92,B93,B95,B97,B98,C1,C11,C15,C16,C20,C21,C22,C23,C27,C28,C29,C32,C33,C35,C36,C37,C38,C4,C40,C42,C43,C45,C49,C51,C52,C54,C56,C57,C59,C6,C65,C68,C69,C7,C71,C73,C74,C81,C83,C84,C86,C87,D10,D4,D5,D6,D7
lof_cds	Chr3	58223626	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	29	A24,B1,B103,B109,B114,B121,B128,B38,B39,B4,B5,B50,B53,B7,B70,B78,B87,B89,B94,C24,C28,C31,C4,C46,C5,C53,C61,C65,C77
lof_cds	Chr3	58223633	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	29	A24,B1,B103,B109,B114,B121,B128,B38,B39,B4,B5,B50,B53,B7,B70,B78,B87,B89,B94,C24,C28,C31,C4,C46,C5,C53,C61,C65,C77
typical_cds_rare	Chr3	58223645	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	3	B65,B95,C50
lof_cds	Chr3	58223692	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	7	A2,B127,B47,B62,C14,D6,D7
typical_cds_rare	Chr3	58223699	AGG	*	INDEL	2bp_deletion	CDS_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	1	B57
typical_cds_rare	Chr3	58223707	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	4	B132,B37,B63,B89
lof_cds	Chr3	58223713	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	30	A24,B1,B103,B109,B114,B121,B128,B23,B38,B39,B4,B5,B50,B53,B7,B70,B78,B87,B89,B94,C1,C24,C28,C31,C4,C46,C5,C53,C65,C77
typical_cds_rare	Chr3	58223719	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	5	A14,B129,B13,B24,C33
lof_cds	Chr3	58223759	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	1	C76
typical_cds_rare	Chr3	58223759	T	TG	INDEL	1bp_insertion	CDS_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	1	C76
lof_cds	Chr3	58223760	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	12	B3,B58,B80,B93,C19,C24,C3,C64,C66,C78,C81,D8
typical_cds_rare	Chr3	58223774	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019060	SmilChr03G003913	131019060	rna-XM_057947741.1	4	B63,B72,C72,C85