source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr3	58827607	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	1	B64
typical_cds_rare	Chr3	58827611	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	4	B119,B122,B48,D6
lof_cds	Chr3	58827641	CAG	C	INDEL	2bp_deletion	frameshift_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	107	A10,A13,A20,A22,A8,A9,B10,B103,B104,B105,B106,B108,B110,B112,B113,B117,B119,B121,B127,B130,B134,B136,B137,B16,B18,B22,B26,B29,B30,B31,B32,B34,B35,B37,B39,B4,B41,B46,B47,B49,B5,B50,B52,B56,B57,B59,B60,B61,B63,B69,B70,B71,B72,B75,B77,B79,B8,B82,B84,B86,B88,B9,B93,B94,B98,C1,C13,C14,C15,C18,C19,C22,C23,C25,C27,C28,C29,C3,C32,C33,C34,C35,C37,C38,C4,C40,C42,C44,C46,C47,C48,C63,C65,C68,C75,C76,C78,C81,C82,C83,C84,C85,C87,D10,D7,D8,D9
lof_cds	Chr3	58827647	T	TAC	INDEL	2bp_insertion	frameshift_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	107	A10,A13,A20,A22,A8,A9,B10,B103,B104,B105,B106,B108,B110,B112,B113,B117,B119,B121,B127,B130,B134,B136,B137,B16,B18,B22,B26,B29,B30,B31,B32,B34,B35,B37,B39,B4,B41,B44,B46,B47,B49,B5,B50,B52,B56,B57,B59,B60,B61,B63,B69,B70,B71,B72,B75,B77,B79,B8,B82,B84,B86,B88,B9,B93,B94,B98,C1,C13,C14,C15,C18,C19,C22,C23,C25,C27,C28,C29,C3,C32,C33,C34,C35,C37,C38,C4,C40,C44,C46,C47,C48,C63,C65,C68,C75,C76,C78,C81,C82,C83,C84,C85,C87,D10,D7,D8,D9
typical_cds_rare	Chr3	58827668	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	4	A24,B53,B94,C61
lof_cds	Chr3	58827711	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	1	C83
typical_cds_rare	Chr3	58827711	GA	G	INDEL	1bp_deletion	CDS_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	1	C83
typical_cds_rare	Chr3	58827735	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	5	B122,B53,B78,B94,C61
lof_cds	Chr3	58827750	GGA	G	INDEL	2bp_deletion	frameshift_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	3	C11,C69,C74
typical_cds_rare	Chr3	58827750	GGA	G	INDEL	2bp_deletion	CDS_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	3	C11,C69,C74
lof_cds	Chr3	58827763	T	TCA	INDEL	2bp_insertion	frameshift_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	3	A5,B32,C73
typical_cds_rare	Chr3	58827763	T	TCA	INDEL	2bp_insertion	CDS_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	3	A5,B32,C73
lof_cds	Chr3	58827775	AGC	A	INDEL	2bp_deletion	frameshift_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	82	A1,A14,A15,A19,A2,A21,A25,A4,A9,B1,B10,B100,B104,B11,B114,B117,B118,B120,B122,B125,B128,B129,B130,B14,B15,B2,B20,B21,B23,B24,B25,B28,B3,B4,B42,B48,B53,B58,B6,B63,B66,B67,B68,B70,B71,B73,B74,B78,B85,B90,B92,B93,B94,B95,B98,B99,C10,C11,C12,C14,C26,C3,C31,C36,C39,C46,C61,C62,C63,C67,C69,C7,C71,C72,C73,C79,C8,C83,C9,D1,D2,D9
typical_cds_rare	Chr3	58827782	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	1	B100
lof_cds	Chr3	58827850	G	GC	INDEL	1bp_insertion	frameshift_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	6	B33,B62,C34,C47,C75,C85
lof_cds	Chr3	58827865	C	CCG	INDEL	2bp_insertion	frameshift_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	10	B114,B12,B127,B14,B49,B67,C34,C36,C47,C75
typical_cds_rare	Chr3	58827976	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	1	B9
lof_cds	Chr3	58828033	A	ATC	INDEL	2bp_insertion	frameshift_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	2	B106,C35
typical_cds_rare	Chr3	58828033	A	ATC	INDEL	2bp_insertion	CDS_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	2	B106,C35
typical_cds_rare	Chr3	58828088	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	1	D6
lof_cds	Chr3	58828152	T	TCC	INDEL	2bp_insertion	frameshift_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	1	C44
typical_cds_rare	Chr3	58828152	T	TCC	INDEL	2bp_insertion	CDS_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	1	C44
lof_cds	Chr3	58828162	T	TCC	INDEL	2bp_insertion	frameshift_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	169	A1,A10,A11,A18,A2,A20,A21,A23,A24,A4,A5,A6,A7,A8,A9,B10,B100,B101,B102,B104,B105,B106,B107,B108,B11,B110,B111,B113,B115,B118,B120,B121,B122,B123,B124,B125,B126,B128,B129,B13,B131,B133,B135,B137,B138,B139,B140,B16,B18,B19,B2,B20,B22,B23,B24,B25,B26,B27,B28,B3,B31,B32,B33,B34,B35,B4,B40,B45,B51,B52,B53,B54,B55,B56,B57,B59,B6,B61,B63,B68,B69,B7,B72,B73,B74,B75,B76,B78,B79,B8,B80,B81,B82,B83,B84,B86,B87,B90,B91,B92,B93,B94,B95,B97,C10,C12,C13,C15,C16,C18,C19,C2,C21,C23,C24,C25,C26,C27,C28,C3,C30,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C43,C45,C47,C48,C5,C51,C54,C55,C56,C57,C58,C59,C6,C61,C62,C64,C65,C66,C68,C7,C71,C72,C76,C77,C78,C8,C80,C81,C82,C83,C84,C86,D10,D4,D5,D6,D7
lof_cds	Chr3	58828182	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	164	A10,A15,A16,A18,A19,A2,A20,A21,A22,A23,A25,A3,A8,B1,B10,B101,B103,B105,B110,B111,B113,B114,B115,B118,B119,B12,B121,B123,B125,B126,B127,B130,B131,B132,B134,B135,B136,B137,B138,B139,B14,B15,B17,B18,B2,B20,B21,B22,B26,B27,B28,B29,B3,B30,B31,B34,B35,B36,B38,B39,B4,B41,B42,B43,B44,B46,B47,B48,B49,B5,B50,B51,B55,B56,B58,B59,B6,B60,B61,B62,B64,B65,B66,B67,B70,B71,B72,B73,B74,B77,B79,B83,B84,B88,B9,B93,B94,B95,B97,B98,B99,C1,C10,C11,C12,C14,C17,C18,C19,C20,C22,C23,C24,C26,C28,C29,C3,C30,C35,C37,C38,C39,C4,C40,C42,C44,C45,C46,C47,C48,C49,C51,C52,C53,C56,C58,C60,C62,C63,C65,C67,C69,C70,C73,C74,C75,C77,C79,C80,C81,C82,C83,C85,C86,C9,D1,D10,D11,D2,D4,D5,D6,D7,D8
typical_cds_rare	Chr3	58828299	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	2	B126,C81
lof_cds	Chr3	58828306	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	1	B140
typical_cds_rare	Chr3	58828306	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	1	B140
typical_cds_rare	Chr3	58828314	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	3	B139,B28,C45
typical_cds_rare	Chr3	58828326	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	1	D6
lof_cds	Chr3	58828335	TGA	T	INDEL	2bp_deletion	frameshift_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	8	B11,B14,B66,B91,C39,C43,D6,D9
lof_cds	Chr3	58828339	T	TAC	INDEL	2bp_insertion	frameshift_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	8	B11,B14,B66,B91,C39,C43,D6,D9
lof_cds	Chr3	58828407	TCC	T	INDEL	2bp_deletion	frameshift_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	5	B11,B118,B41,C29,C43
typical_cds_rare	Chr3	58828407	TCC	T	INDEL	2bp_deletion	CDS_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	5	B11,B118,B41,C29,C43
typical_cds_rare	Chr3	58828446	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	4	B11,B118,B120,C29
typical_cds_rare	Chr3	58828476	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	1	D10
typical_cds_rare	Chr3	58828478	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	1	B120
typical_cds_rare	Chr3	58828483	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	5	A14,B109,B19,B24,C5
typical_cds_rare	Chr3	58828517	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	1	C44
typical_cds_rare	Chr3	58828521	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	1	C75
lof_cds	Chr3	58828532	ACT	A	INDEL	2bp_deletion	frameshift_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	5	B106,B9,C54,C68,C83
typical_cds_rare	Chr3	58828532	ACT	A	INDEL	2bp_deletion	CDS_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	5	B106,B9,C54,C68,C83
lof_cds	Chr3	58828535	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	5	B106,B9,C54,C68,C83
typical_cds_rare	Chr3	58828535	AT	A	INDEL	1bp_deletion	CDS_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	5	B106,B9,C54,C68,C83
typical_cds_rare	Chr3	58828539	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	3	B111,C13,C71
lof_cds	Chr3	58828574	A	AC	INDEL	1bp_insertion	frameshift_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	199	A10,A13,A14,A15,A16,A18,A19,A20,A21,A22,A23,A25,A3,A5,A9,B1,B10,B100,B101,B103,B107,B109,B11,B110,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B122,B123,B124,B126,B127,B128,B129,B130,B131,B132,B134,B135,B136,B137,B138,B139,B14,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B28,B29,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B54,B55,B56,B58,B59,B6,B60,B61,B62,B63,B65,B66,B67,B7,B70,B71,B72,B73,B74,B76,B77,B79,B81,B83,B85,B86,B87,B89,B9,B90,B92,B93,B94,B96,B97,B98,B99,C1,C11,C15,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C27,C28,C29,C3,C30,C31,C33,C34,C35,C36,C39,C4,C42,C44,C45,C46,C47,C49,C5,C50,C52,C53,C56,C57,C58,C6,C60,C62,C63,C65,C67,C69,C7,C70,C71,C73,C74,C75,C76,C77,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D11,D2,D3,D6,D7,D8,D9
typical_cds_rare	Chr3	58828592	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	3	A23,C53,C56
typical_cds_rare	Chr3	58828594	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	1	B100
typical_cds_rare	Chr3	58828610	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	4	B100,B106,B31,C83
typical_cds_rare	Chr3	58828613	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	3	B106,B31,C83
typical_cds_rare	Chr3	58828623	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	3	A22,B111,C40
typical_cds_rare	Chr3	58828652	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	1	B67
typical_cds_rare	Chr3	58828899	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	1	B118
typical_cds_rare	Chr3	58828929	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	5	A14,B109,B19,B24,C5
typical_cds_rare	Chr3	58829043	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	1	C44
typical_cds_rare	Chr3	58829127	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131014839	SmilChr03G003982	131014839	rna-XM_057942956.1	2	B86,C77