source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr3	60362594	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	1	C52
typical_cds_rare	Chr3	60362656	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	3	A3,A7,B40
lof_cds	Chr3	60362810	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	8	B1,B5,B58,B78,C13,C62,C65,C77
lof_cds	Chr3	60375406	TAG	T	INDEL	2bp_deletion	frameshift_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	28	A14,A15,B101,B109,B117,B126,B129,B130,B135,B18,B2,B24,B28,B3,B33,B40,B54,B64,B70,B75,B85,C16,C23,C31,C47,C58,C71,C84
lof_cds	Chr3	60375413	TAA	T	INDEL	2bp_deletion	frameshift_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	26	A14,A15,B101,B109,B117,B126,B129,B18,B2,B24,B28,B3,B33,B40,B54,B64,B70,B75,B85,C16,C23,C31,C47,C58,C71,C84
lof_cds	Chr3	60375418	C	CAA	INDEL	2bp_insertion	frameshift_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	26	A14,A15,B101,B109,B117,B126,B129,B18,B2,B24,B28,B3,B33,B40,B54,B64,B70,B75,B85,C16,C23,C31,C47,C58,C71,C84
lof_cds	Chr3	60375420	C	CCA	INDEL	2bp_insertion	frameshift_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	26	A14,A15,B101,B109,B117,B126,B129,B18,B2,B24,B28,B3,B33,B40,B54,B64,B70,B75,B85,C16,C23,C31,C47,C58,C71,C84
typical_cds_rare	Chr3	60375427	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	3	B136,B26,C45
typical_cds_rare	Chr3	60375455	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	4	A23,B60,B73,B9
typical_cds_rare	Chr3	60375477	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	1	D10
typical_cds_rare	Chr3	60375503	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	5	B106,B119,B23,B65,C72
lof_cds	Chr3	60375654	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	7	A19,B115,B95,C27,C3,C5,C6
lof_cds	Chr3	60375754	CTG	C	INDEL	2bp_deletion	frameshift_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	18	A1,A4,B109,B130,B131,B132,B38,B44,B5,B60,B66,B70,B97,C18,C71,C72,C77,C84
lof_cds	Chr3	60375814	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	20	A9,B114,B124,B13,B24,B49,B52,B8,B85,B90,C16,C24,C27,C31,C48,C49,C53,C60,C71,C72
typical_cds_rare	Chr3	60375868	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	3	A14,B18,C2
lof_cds	Chr3	60376022	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	1	B99
typical_cds_rare	Chr3	60376022	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	1	B99
typical_cds_rare	Chr3	60376104	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	1	C38
typical_cds_rare	Chr3	60376224	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	1	A21
typical_cds_rare	Chr3	60376357	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	2	A14,B103
typical_cds_rare	Chr3	60376358	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	2	A14,B103
typical_cds_rare	Chr3	60376370	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	3	B57,B99,C84
typical_cds_rare	Chr3	60376403	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	3	B110,B48,C76
lof_cds	Chr3	60376587	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	5	B130,B69,B9,C30,C76
typical_cds_rare	Chr3	60376587	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	5	B130,B69,B9,C30,C76
typical_cds_rare	Chr3	60376608	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	1	D10
typical_cds_rare	Chr3	60376622	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	3	A23,B9,C30
typical_cds_rare	Chr3	60376850	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	4	B106,B119,B23,B65
typical_cds_rare	Chr3	60376877	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	2	B131,D11
typical_cds_rare	Chr3	60376904	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	1	D10
typical_cds_rare	Chr3	60376924	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	3	B122,B24,C23
lof_cds	Chr3	60376969	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	7	B1,B12,B25,B7,C15,C42,C71
lof_cds	Chr3	60377011	GAA	G	INDEL	2bp_deletion	frameshift_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	6	B1,B12,B25,C15,C42,C71
lof_cds	Chr3	60377014	TTC	T	INDEL	2bp_deletion	frameshift_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	6	B1,B12,B25,C15,C42,C71
typical_cds_rare	Chr3	60377023	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	4	B108,B122,B24,C23
lof_cds	Chr3	60377165	G	GT	INDEL	1bp_insertion	frameshift_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	2	B128,C40
typical_cds_rare	Chr3	60377165	G	GT	INDEL	1bp_insertion	CDS_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	2	B128,C40
typical_cds_rare	Chr3	60377166	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	2	B128,C40
typical_cds_rare	Chr3	60377187	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	5	A23,B57,B9,C30,C84
typical_cds_rare	Chr3	60377202	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	2	D10,D11
lof_cds	Chr3	60377267	TGC	T	INDEL	2bp_deletion	frameshift_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	3	B108,B122,C23
typical_cds_rare	Chr3	60377267	TGC	T	INDEL	2bp_deletion	CDS_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	3	B108,B122,C23
lof_cds	Chr3	60377285	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	20	A8,B110,B123,B126,B135,B136,B14,B26,B27,B31,B45,B53,B82,B91,C1,C10,C20,C43,C45,C68
lof_cds	Chr3	60377363	T	TCG	INDEL	2bp_insertion	frameshift_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	104	A10,A18,A24,A7,A8,B1,B102,B106,B107,B108,B109,B11,B110,B114,B115,B117,B118,B120,B121,B122,B123,B125,B126,B13,B131,B132,B138,B14,B2,B21,B24,B3,B30,B31,B37,B38,B39,B4,B40,B42,B44,B45,B49,B5,B50,B53,B58,B59,B61,B63,B67,B68,B7,B76,B78,B8,B80,B85,B86,B88,B91,B94,B95,B97,B98,C1,C11,C12,C13,C16,C20,C21,C27,C29,C31,C32,C33,C34,C36,C39,C47,C48,C51,C55,C58,C61,C62,C65,C68,C69,C7,C70,C71,C72,C73,C74,C77,C8,C81,C82,C84,C85,D3,D5
lof_cds	Chr3	60377364	TAA	T	INDEL	2bp_deletion	frameshift_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	104	A10,A18,A24,A7,A8,B1,B102,B106,B107,B108,B109,B11,B110,B114,B115,B117,B118,B120,B121,B122,B123,B125,B126,B13,B131,B132,B138,B14,B2,B21,B24,B3,B30,B31,B37,B38,B39,B4,B40,B42,B44,B45,B49,B5,B50,B53,B58,B59,B61,B63,B67,B68,B7,B76,B78,B8,B80,B85,B86,B88,B91,B94,B95,B97,B98,C1,C11,C12,C13,C16,C20,C21,C27,C29,C31,C32,C33,C34,C36,C39,C47,C48,C51,C55,C58,C61,C62,C65,C68,C69,C7,C70,C71,C72,C73,C74,C77,C8,C81,C82,C84,C85,D3,D5
lof_cds	Chr3	60377408	A	AAC	INDEL	2bp_insertion	frameshift_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	3	B105,C22,C66
typical_cds_rare	Chr3	60377408	A	AAC	INDEL	2bp_insertion	CDS_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	3	B105,C22,C66
lof_cds	Chr3	60377504	G	GGC	INDEL	2bp_insertion	frameshift_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	65	A10,A16,A18,A20,A23,A24,A25,A3,A5,A7,B10,B102,B103,B104,B107,B112,B120,B125,B127,B128,B129,B134,B136,B139,B140,B17,B19,B27,B28,B36,B38,B39,B4,B40,B47,B48,B5,B52,B57,B59,B60,B64,B7,B73,B74,B77,B78,B80,B90,B96,C22,C36,C45,C62,C64,C66,C68,C76,C77,C78,C82,C85,C86,D4,D6
lof_cds	Chr3	60377510	C	CG	INDEL	1bp_insertion	frameshift_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	2	B135,C34
typical_cds_rare	Chr3	60377510	C	CG	INDEL	1bp_insertion	CDS_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	2	B135,C34
typical_cds_rare	Chr3	60377694	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	1	B140
lof_cds	Chr3	60377868	TGG	T	INDEL	2bp_deletion	frameshift_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	67	A2,A23,A24,A6,A7,B1,B101,B102,B104,B107,B113,B125,B126,B132,B140,B19,B20,B21,B26,B27,B29,B33,B36,B4,B40,B44,B5,B50,B55,B56,B6,B60,B64,B66,B70,B75,B78,B82,B84,B85,B87,B90,B93,B96,B97,B99,C18,C24,C29,C30,C35,C42,C45,C48,C52,C53,C55,C56,C57,C58,C59,C60,C63,C67,C71,C72,D11
lof_cds	Chr3	60377871	C	CGT	INDEL	2bp_insertion	frameshift_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	55	A1,A10,A11,A13,A15,A2,A3,A4,A5,B1,B10,B11,B114,B134,B135,B16,B3,B37,B38,B47,B57,B58,B59,B61,B62,B68,B7,B76,B77,B8,B92,C11,C16,C27,C32,C34,C47,C5,C50,C58,C6,C61,C62,C69,C7,C71,C72,C78,C80,C82,C85,C86,D3,D6,D9
lof_cds	Chr3	60377886	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	46	A1,A13,A15,A6,B101,B102,B113,B125,B131,B135,B140,B16,B19,B26,B29,B47,B5,B50,B56,B6,B66,B68,B77,B8,B84,B86,B87,B9,B96,B97,C11,C18,C27,C31,C34,C45,C47,C5,C55,C57,C58,C62,C63,C78,C82,D10
lof_cds	Chr3	60377890	CAA	C	INDEL	2bp_deletion	frameshift_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	42	A1,A3,A4,A5,B10,B11,B113,B114,B134,B135,B37,B38,B44,B47,B5,B57,B58,B59,B61,B62,B68,B7,B76,B77,B8,B92,B95,C11,C16,C32,C34,C50,C59,C6,C61,C62,C71,C80,C85,C86,D6,D9
lof_cds	Chr3	60377895	GTT	G	INDEL	2bp_deletion	frameshift_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	93	A1,A10,A11,A13,A15,A23,A3,A4,A5,A6,B10,B101,B102,B104,B11,B113,B125,B131,B132,B134,B135,B140,B19,B20,B26,B27,B3,B33,B36,B38,B4,B44,B47,B5,B50,B56,B57,B58,B59,B6,B61,B62,B64,B66,B68,B7,B76,B77,B8,B84,B86,B87,B9,B92,B95,B96,B97,B99,C11,C12,C16,C18,C24,C27,C31,C32,C34,C45,C47,C5,C50,C51,C53,C55,C57,C58,C59,C6,C61,C62,C63,C7,C71,C72,C78,C80,C82,C85,C86,D10,D11,D6,D9
lof_cds	Chr3	60377903	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	8	B104,B27,B33,B44,B90,C48,C59,D11
typical_cds_rare	Chr3	60377928	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	5	B122,B135,B16,B77,C2
lof_cds	Chr3	60377971	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	24	A10,B1,B102,B107,B131,B132,B133,B38,B39,B5,B52,B58,B7,B78,C12,C13,C51,C55,C58,C62,C65,C72,C77,C85
lof_cds	Chr3	60378011	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	15	B108,B138,B21,B25,B40,B44,B49,B55,B64,C16,C29,C42,C55,C56,C71
typical_cds_rare	Chr3	60378044	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	2	B135,B77
lof_cds	Chr3	60378046	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	2	B135,B77
typical_cds_rare	Chr3	60378046	TC	T	INDEL	1bp_deletion	CDS_variant	LOC131015028	SmilChr03G004158	131015028	rna-XM_057943222.1	2	B135,B77