source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr3	63829152	TTC	T	INDEL	2bp_deletion	frameshift_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	6	A20,B23,B65,B73,C6,C8
lof_cds	Chr3	63829155	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	17	A21,B113,B126,B136,B22,B34,B41,B42,B51,B60,B68,B76,C20,C22,C32,C74,C84
lof_cds	Chr3	63829237	C	CCA	INDEL	2bp_insertion	frameshift_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	2	B93,D9
typical_cds_rare	Chr3	63829237	C	CCA	INDEL	2bp_insertion	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	2	B93,D9
typical_cds_rare	Chr3	63829282	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	1	B96
typical_cds_rare	Chr3	63829326	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	1	B134
lof_cds	Chr3	63829349	TAG	T	INDEL	2bp_deletion	frameshift_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	2	B96,C14
typical_cds_rare	Chr3	63829349	TAG	T	INDEL	2bp_deletion	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	2	B96,C14
typical_cds_rare	Chr3	63829361	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	1	C9
typical_cds_rare	Chr3	63829363	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	1	B68
typical_cds_rare	Chr3	63829397	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	2	B111,C52
typical_cds_rare	Chr3	63829404	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	2	B12,B55
typical_cds_rare	Chr3	63829544	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	1	B58
typical_cds_rare	Chr3	63829550	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	1	B23
typical_cds_rare	Chr3	63829585	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	3	B46,B67,B72
lof_cds	Chr3	63829598	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	3	C31,C59,C65
typical_cds_rare	Chr3	63829598	TC	T	INDEL	1bp_deletion	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	3	C31,C59,C65
lof_cds	Chr3	63829599	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	6	A11,A7,B47,B57,B86,D7
lof_cds	Chr3	63829609	G	GT	INDEL	1bp_insertion	frameshift_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	3	C31,C59,C65
typical_cds_rare	Chr3	63829609	G	GT	INDEL	1bp_insertion	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	3	C31,C59,C65
typical_cds_rare	Chr3	63829630	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	3	B46,B67,B72
lof_cds	Chr3	63829631	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	1	C40
typical_cds_rare	Chr3	63829631	TA	T	INDEL	1bp_deletion	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	1	C40
lof_cds	Chr3	63829634	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	2	A11,B126
typical_cds_rare	Chr3	63829634	AG	A	INDEL	1bp_deletion	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	2	A11,B126
lof_cds	Chr3	63829637	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	1	C40
typical_cds_rare	Chr3	63829637	T	TC	INDEL	1bp_insertion	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	1	C40
typical_cds_rare	Chr3	63829638	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	3	C31,C59,C65
typical_cds_rare	Chr3	63829649	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	1	B126
typical_cds_rare	Chr3	63829650	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	1	C40
typical_cds_rare	Chr3	63829665	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	4	B67,C31,C59,C65
typical_cds_rare	Chr3	63829684	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	2	B93,B95
typical_cds_rare	Chr3	63829710	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	2	B46,B67
typical_cds_rare	Chr3	63829729	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	2	A18,C61
lof_cds	Chr3	63829784	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	17	A11,A7,B101,B121,B16,B27,B47,B48,B57,B86,B95,C22,C43,C64,C80,D5,D9
typical_cds_rare	Chr3	63829831	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	3	B105,C2,C61
lof_cds	Chr3	63829867	G	GT	INDEL	1bp_insertion	frameshift_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	1	C64
typical_cds_rare	Chr3	63829867	G	GT	INDEL	1bp_insertion	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	1	C64
lof_cds	Chr3	63829868	G	GGA	INDEL	2bp_insertion	frameshift_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	12	A18,B15,B4,B71,C14,C19,C64,C66,C7,C76,D11,D5
lof_cds	Chr3	63829871	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	1	C64
typical_cds_rare	Chr3	63829871	A	AT	INDEL	1bp_insertion	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	1	C64
typical_cds_rare	Chr3	63829927	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	1	B4
typical_cds_rare	Chr3	63829989	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	3	B124,B30,B59
typical_cds_rare	Chr3	63830055	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	1	C17
typical_cds_rare	Chr3	63830063	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	5	A3,B59,B75,C20,C21
typical_cds_rare	Chr3	63830076	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	5	A3,B59,B75,C20,C21
lof_cds	Chr3	63830079	CTT	C	INDEL	2bp_deletion	frameshift_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	4	C13,C17,C31,C61
typical_cds_rare	Chr3	63830079	CTT	C	INDEL	2bp_deletion	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	4	C13,C17,C31,C61
lof_cds	Chr3	63830082	CTT	C	INDEL	2bp_deletion	frameshift_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	45	A19,A20,A5,B105,B109,B128,B134,B137,B139,B20,B30,B34,B35,B44,B56,B64,B65,B69,B7,B73,B77,B78,B85,B94,B96,B99,C12,C2,C26,C3,C41,C42,C46,C47,C5,C50,C53,C55,C56,C67,C77,C82,D11,D5,D6
lof_cds	Chr3	63830085	CG	C	INDEL	1bp_deletion	frameshift_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	45	A19,A20,A5,B105,B109,B128,B134,B137,B139,B20,B30,B34,B35,B44,B56,B64,B65,B69,B7,B73,B77,B78,B85,B94,B96,B99,C12,C2,C26,C3,C41,C42,C46,C47,C5,C50,C53,C55,C56,C67,C77,C82,D11,D5,D6
typical_cds_rare	Chr3	63830088	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	2	C31,C61
typical_cds_rare	Chr3	63830136	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	2	C31,C61
typical_cds_rare	Chr3	63830206	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	1	B77
typical_cds_rare	Chr3	63830234	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	1	C40
typical_cds_rare	Chr3	63830568	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	5	B112,C11,C18,C40,C69
lof_cds	Chr3	63830700	AAG	A	INDEL	2bp_deletion	frameshift_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	1	B35
typical_cds_rare	Chr3	63830700	AAG	A	INDEL	2bp_deletion	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	1	B35
typical_cds_rare	Chr3	63830708	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	1	C5
typical_cds_rare	Chr3	63830728	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	5	B108,B60,C23,C40,C54
typical_cds_rare	Chr3	63830850	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	4	A1,C23,C43,D9
typical_cds_rare	Chr3	63830860	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	2	B109,B114
typical_cds_rare	Chr3	63830887	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	2	A18,B117
typical_cds_rare	Chr3	63830901	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	1	D10
typical_cds_rare	Chr3	63830909	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	2	C31,C61
typical_cds_rare	Chr3	63830913	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	1	D10
typical_cds_rare	Chr3	63830946	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	2	B94,C16
typical_cds_rare	Chr3	63830952	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	3	B94,C16,C2
typical_cds_rare	Chr3	63830977	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	5	B11,B6,C48,C80,C84
lof_cds	Chr3	63830991	TCC	T	INDEL	2bp_deletion	frameshift_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	2	B46,B67
typical_cds_rare	Chr3	63830991	TCC	T	INDEL	2bp_deletion	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	2	B46,B67
lof_cds	Chr3	63830993	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	2	C32,C68
typical_cds_rare	Chr3	63830993	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	2	C32,C68
typical_cds_rare	Chr3	63830995	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	2	B115,C9
lof_cds	Chr3	63830997	A	ACC	INDEL	2bp_insertion	frameshift_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	115	A14,A20,A22,A24,A25,A4,A6,A8,A9,B10,B102,B103,B104,B105,B107,B109,B11,B110,B113,B114,B115,B119,B120,B123,B125,B126,B128,B129,B13,B130,B131,B134,B137,B14,B140,B15,B20,B21,B22,B23,B24,B25,B29,B3,B30,B31,B35,B36,B46,B51,B52,B53,B55,B56,B57,B6,B63,B64,B66,B67,B68,B70,B72,B78,B79,B82,B85,B87,B89,B93,B96,C1,C12,C13,C16,C19,C20,C24,C27,C3,C30,C32,C33,C36,C38,C39,C41,C48,C49,C5,C50,C53,C54,C55,C56,C57,C58,C60,C64,C66,C67,C69,C7,C70,C71,C73,C75,C82,C83,C86,D1,D11,D2,D3,D7
typical_cds_rare	Chr3	63831011	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	3	B30,C13,C28
typical_cds_rare	Chr3	63831022	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	1	B107
typical_cds_rare	Chr3	63831034	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	4	B30,C13,C28,C4
lof_cds	Chr3	63831063	G	GCT	INDEL	2bp_insertion	frameshift_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	14	A6,B109,B115,B41,B46,B63,B68,B94,C24,C39,C48,C58,C73,C82
typical_cds_rare	Chr3	63831081	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	4	B24,B41,C58,C82
lof_cds	Chr3	63831107	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	75	A1,A11,A14,A5,A7,B105,B106,B113,B122,B124,B125,B126,B128,B13,B131,B134,B135,B137,B139,B15,B16,B18,B2,B22,B23,B24,B27,B29,B34,B41,B42,B43,B46,B53,B54,B63,B65,B7,B70,B71,B72,B73,B78,B83,B85,B86,B87,B88,B94,B99,C12,C17,C22,C24,C29,C30,C40,C41,C46,C47,C49,C51,C52,C58,C59,C65,C69,C73,C74,C75,C81,C82,C85,D5,D8
lof_cds	Chr3	63831112	TCC	T	INDEL	2bp_deletion	frameshift_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	82	A1,A11,A14,A16,A3,A5,A7,B105,B106,B113,B122,B124,B125,B126,B128,B13,B131,B134,B135,B137,B139,B15,B16,B18,B2,B22,B23,B24,B27,B29,B34,B39,B41,B42,B43,B46,B53,B54,B59,B63,B65,B7,B70,B71,B72,B73,B75,B78,B81,B83,B85,B86,B87,B88,B94,B99,C12,C17,C22,C24,C29,C30,C31,C40,C41,C46,C47,C49,C51,C52,C58,C59,C65,C69,C73,C74,C75,C81,C82,C85,D5,D8
typical_cds_rare	Chr3	63831142	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	1	D10
typical_cds_rare	Chr3	63831148	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	1	D10
typical_cds_rare	Chr3	63831165	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	1	D10
typical_cds_rare	Chr3	63831175	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	5	B11,B6,C34,C48,C76
lof_cds	Chr3	63831283	T	TAG	INDEL	2bp_insertion	frameshift_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	1	B4
typical_cds_rare	Chr3	63831283	T	TAG	INDEL	2bp_insertion	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	1	B4
lof_cds	Chr3	63831286	TCC	T	INDEL	2bp_deletion	frameshift_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	1	B4
typical_cds_rare	Chr3	63831286	TCC	T	INDEL	2bp_deletion	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	1	B4
typical_cds_rare	Chr3	63831301	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	1	B67
lof_cds	Chr3	63831318	GC	G	INDEL	1bp_deletion	frameshift_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	3	B10,B97,C49
typical_cds_rare	Chr3	63831318	GC	G	INDEL	1bp_deletion	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	3	B10,B97,C49
lof_cds	Chr3	63831320	TCA	T	INDEL	2bp_deletion	frameshift_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	9	A3,B10,B26,B59,B75,B97,C20,C35,C49
lof_cds	Chr3	63831328	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	4	B19,B2,C29,C30
typical_cds_rare	Chr3	63831328	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	4	B19,B2,C29,C30
typical_cds_rare	Chr3	63831347	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	4	A3,B75,C20,C21
typical_cds_rare	Chr3	63831349	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	3	A3,B26,B75
typical_cds_rare	Chr3	63831386	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131019173	SmilChr03G004610	131019173	rna-XM_057947858.1	4	B44,B5,B86,C42