source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr3	64390572	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	1	B89
typical_cds_rare	Chr3	64390572	GA	G	INDEL	1bp_deletion	CDS_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	1	B89
lof_cds	Chr3	64390780	G	GCA	INDEL	2bp_insertion	frameshift_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	3	A7,B120,C16
typical_cds_rare	Chr3	64390780	G	GCA	INDEL	2bp_insertion	CDS_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	3	A7,B120,C16
typical_cds_rare	Chr3	64390901	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	2	C24,C76
typical_cds_rare	Chr3	64390907	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	4	B24,B30,C68,C81
typical_cds_rare	Chr3	64390989	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	1	C45
lof_cds	Chr3	64391042	GAA	G	INDEL	2bp_deletion	frameshift_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	3	B42,D1,D9
typical_cds_rare	Chr3	64391042	GAA	G	INDEL	2bp_deletion	CDS_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	3	B42,D1,D9
lof_cds	Chr3	64391045	G	GTA	INDEL	2bp_insertion	stop_gained,frameshift_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	3	B42,D1,D9
typical_cds_rare	Chr3	64391045	G	GTA	INDEL	2bp_insertion	CDS_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	3	B42,D1,D9
typical_cds_rare	Chr3	64391078	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	1	B26
typical_cds_rare	Chr3	64391125	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	1	C28
lof_cds	Chr3	64391153	C	CTG	INDEL	2bp_insertion	frameshift_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	7	A14,B4,B5,B65,B83,C51,C64
lof_cds	Chr3	64391157	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	24	A13,A14,A15,A9,B3,B42,B44,B5,B53,B6,B65,B66,B83,B86,B89,B99,C19,C37,C52,C54,C69,C84,C9,D5
lof_cds	Chr3	64391158	CGG	C	INDEL	2bp_deletion	frameshift_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	52	A13,A20,A24,A3,A5,A9,B102,B105,B119,B125,B128,B129,B132,B17,B4,B40,B45,B48,B49,B51,B65,B68,B71,B73,B75,B80,B82,B83,B86,B90,B91,B92,B93,B95,B96,B97,C20,C27,C32,C34,C41,C51,C53,C56,C6,C62,C64,C66,C70,C82,C83,D7
lof_cds	Chr3	64391179	C	CGG	INDEL	2bp_insertion	frameshift_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	3	B17,C20,C70
typical_cds_rare	Chr3	64391179	C	CGG	INDEL	2bp_insertion	CDS_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	3	B17,C20,C70
lof_cds	Chr3	64391180	TCC	T	INDEL	2bp_deletion	frameshift_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	3	B17,C20,C70
typical_cds_rare	Chr3	64391180	TCC	T	INDEL	2bp_deletion	CDS_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	3	B17,C20,C70
typical_cds_rare	Chr3	64391228	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	1	B1
lof_cds	Chr3	64391252	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	4	A14,B6,C19,D5
typical_cds_rare	Chr3	64391252	CA	C	INDEL	1bp_deletion	CDS_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	4	A14,B6,C19,D5
lof_cds	Chr3	64391253	A	ACG	INDEL	2bp_insertion	frameshift_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	11	B101,B110,B126,B18,B24,B30,C20,C21,C39,C5,C64
lof_cds	Chr3	64391254	GAA	G	INDEL	2bp_deletion	frameshift_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	11	B101,B110,B126,B18,B24,B30,C20,C21,C39,C5,C64
lof_cds	Chr3	64391258	C	CT	INDEL	1bp_insertion	stop_gained,frameshift_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	4	A14,B6,C19,D5
typical_cds_rare	Chr3	64391258	C	CT	INDEL	1bp_insertion	CDS_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	4	A14,B6,C19,D5
typical_cds_rare	Chr3	64391259	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	4	B115,B20,B62,D10
typical_cds_rare	Chr3	64391419	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	4	A20,A4,B122,C1
lof_cds	Chr3	64391540	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	144	A10,A11,A13,A14,A15,A16,A18,A20,A21,A23,A3,A4,A5,A7,A8,A9,B1,B10,B100,B101,B104,B105,B106,B107,B108,B109,B113,B115,B119,B12,B120,B122,B124,B125,B128,B129,B132,B133,B134,B136,B137,B139,B14,B15,B16,B17,B18,B19,B2,B20,B22,B24,B25,B27,B3,B34,B37,B4,B40,B45,B46,B48,B49,B50,B51,B52,B53,B54,B56,B57,B59,B62,B66,B68,B70,B71,B73,B74,B75,B77,B79,B82,B86,B90,B91,B93,B94,B95,B96,B99,C1,C10,C13,C15,C16,C17,C18,C19,C21,C22,C25,C26,C27,C31,C32,C33,C34,C36,C37,C39,C40,C41,C43,C47,C50,C53,C55,C56,C57,C58,C59,C6,C60,C62,C63,C7,C70,C72,C73,C74,C75,C76,C77,C78,C79,C80,C82,C87,C9,D10,D11,D3,D5,D7
typical_cds_rare	Chr3	64391552	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	1	B1
lof_cds	Chr3	64392405	G	GAA	INDEL	2bp_insertion	frameshift_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	22	A14,A20,A7,B104,B122,B136,B137,B20,B24,B55,B60,B73,B77,B93,B94,C26,C39,C42,C58,C61,C79,C80
lof_cds	Chr3	64392413	A	ATT	INDEL	2bp_insertion	frameshift_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	22	A14,A20,A7,B104,B122,B136,B137,B20,B24,B55,B60,B73,B77,B93,B94,C26,C39,C42,C58,C61,C79,C80
typical_cds_rare	Chr3	64392424	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	2	B41,B49
typical_cds_rare	Chr3	64392441	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	2	C33,D4
typical_cds_rare	Chr3	64392474	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	5	B101,B37,B46,C32,C5
typical_cds_rare	Chr3	64392529	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	4	B70,C20,C23,C71
lof_cds	Chr3	64392673	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	84	A13,A14,A18,A2,A21,A25,A4,A6,A7,A8,B1,B101,B103,B104,B108,B109,B113,B114,B121,B122,B131,B136,B139,B140,B15,B16,B18,B19,B20,B26,B29,B30,B35,B37,B42,B43,B44,B46,B51,B56,B57,B60,B61,B64,B65,B67,B68,B69,B83,B84,B90,B95,C1,C11,C13,C18,C20,C28,C3,C32,C33,C38,C39,C40,C46,C52,C58,C63,C66,C68,C70,C72,C75,C76,C78,C81,C83,C84,C87,D10,D11,D2,D4,D8
typical_cds_rare	Chr3	64392855	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	3	A14,B37,C74
lof_cds	Chr3	64392863	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	2	B84,C52
typical_cds_rare	Chr3	64392863	T	TG	INDEL	1bp_insertion	CDS_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	2	B84,C52
lof_cds	Chr3	64392964	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	6	A2,B110,B32,B4,C5,D5
lof_cds	Chr3	64392967	CT	C	INDEL	1bp_deletion	frameshift_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	6	A2,B110,B32,B4,C5,D5
lof_cds	Chr3	64392969	GAT	G	INDEL	2bp_deletion	frameshift_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	6	A2,B110,B32,B4,C5,D5
lof_cds	Chr3	64392974	CT	C	INDEL	1bp_deletion	frameshift_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	6	A2,B110,B32,B4,C5,D5
lof_cds	Chr3	64392976	A	AGC	INDEL	2bp_insertion	stop_gained,frameshift_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	6	A2,B110,B32,B4,C5,D5
lof_cds	Chr3	64392983	T	TCC	INDEL	2bp_insertion	frameshift_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	98	A1,A10,A18,A2,A21,A22,A25,A3,A4,A7,A8,B102,B103,B108,B11,B111,B113,B114,B118,B122,B123,B124,B126,B129,B13,B131,B133,B137,B138,B139,B140,B17,B19,B20,B26,B29,B30,B34,B37,B42,B43,B44,B45,B48,B55,B59,B60,B61,B62,B63,B65,B67,B7,B71,B72,B77,B78,B81,B84,B9,B90,B92,B95,B97,B98,C1,C10,C13,C16,C2,C20,C28,C29,C32,C33,C34,C38,C43,C5,C52,C58,C59,C62,C63,C64,C66,C68,C72,C75,C77,C78,C82,C83,C87,D10,D3,D4,D8
lof_cds	Chr3	64392992	TAA	T	INDEL	2bp_deletion	frameshift_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	1	B20
typical_cds_rare	Chr3	64392992	TAA	T	INDEL	2bp_deletion	CDS_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	1	B20
typical_cds_rare	Chr3	64392996	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	5	A2,B110,B4,C5,D5
lof_cds	Chr3	64393001	C	CGT	INDEL	2bp_insertion	frameshift_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	1	B20
typical_cds_rare	Chr3	64393001	C	CGT	INDEL	2bp_insertion	CDS_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	1	B20
lof_cds	Chr3	64393007	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	65	A1,A10,A18,A2,A21,A22,A25,A3,A8,B102,B103,B105,B109,B118,B122,B124,B125,B13,B131,B133,B138,B139,B14,B16,B17,B19,B25,B29,B30,B37,B42,B44,B45,B46,B48,B60,B61,B62,B65,B72,B77,B78,B81,B9,B92,B97,C1,C10,C18,C2,C28,C29,C33,C43,C5,C59,C62,C66,C72,C78,C83,C87,D10,D11,D4
lof_cds	Chr3	64393013	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	71	A1,A10,A18,A2,A21,A22,A25,A3,A7,A8,B102,B103,B105,B109,B118,B122,B124,B125,B13,B131,B133,B138,B139,B14,B140,B16,B17,B19,B25,B29,B30,B34,B37,B42,B44,B45,B46,B48,B60,B61,B62,B65,B72,B77,B78,B81,B9,B92,B97,C1,C10,C16,C18,C2,C28,C29,C32,C33,C43,C5,C59,C62,C66,C68,C72,C78,C83,C87,D10,D11,D4
lof_cds	Chr3	64393015	ACG	A	INDEL	2bp_deletion	frameshift_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	69	A1,A10,A18,A2,A21,A22,A25,A3,A7,A8,B102,B103,B105,B109,B118,B122,B124,B125,B13,B131,B133,B138,B139,B14,B16,B17,B19,B25,B29,B30,B34,B37,B42,B44,B45,B46,B48,B60,B61,B62,B65,B72,B77,B78,B81,B9,B97,C1,C10,C16,C18,C2,C28,C29,C32,C33,C43,C5,C59,C62,C66,C68,C72,C78,C83,C87,D10,D11,D4
typical_cds_rare	Chr3	64393022	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	3	B140,B55,B92
lof_cds	Chr3	64393030	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	1	A8
typical_cds_rare	Chr3	64393030	CA	C	INDEL	1bp_deletion	CDS_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	1	A8
typical_cds_rare	Chr3	64393066	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	3	A8,B108,B26
typical_cds_rare	Chr3	64393084	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	4	A22,B32,B83,C24
typical_cds_rare	Chr3	64393085	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	1	C74
lof_cds	Chr3	64393090	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	89	A1,A10,A18,A21,A25,A3,A8,B102,B103,B108,B109,B11,B111,B113,B114,B118,B122,B124,B125,B126,B131,B133,B135,B138,B139,B14,B140,B16,B17,B19,B20,B21,B25,B29,B30,B31,B37,B42,B44,B45,B46,B48,B50,B59,B60,B61,B62,B65,B69,B72,B78,B81,B9,B92,B93,B95,B97,C1,C10,C16,C18,C2,C28,C29,C32,C33,C34,C41,C43,C46,C5,C52,C58,C59,C62,C63,C64,C66,C72,C75,C78,C82,C83,C87,D10,D11,D3,D4,D8
typical_cds_rare	Chr3	64393118	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	3	B126,C52,D11
lof_cds	Chr3	64393145	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC131015554	SmilChr03G004714	131015554	rna-XM_057943974.1	12	A14,B18,B29,B41,B43,B44,B5,B6,B65,B75,C51,C64