source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr4	10406470	TAC	T	INDEL	2bp_deletion	frameshift_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	65	A10,A25,A3,A4,A7,A8,B100,B109,B11,B110,B115,B125,B127,B13,B132,B14,B15,B19,B28,B29,B32,B36,B38,B4,B40,B44,B45,B46,B47,B51,B53,B54,B6,B64,B70,B77,B80,B81,B83,B84,B87,B88,B9,B90,B92,C13,C19,C21,C28,C29,C3,C32,C45,C47,C49,C52,C53,C60,C63,C64,C67,C68,C70,C77,C85
typical_cds_rare	Chr4	10406511	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	1	B57
typical_cds_rare	Chr4	10406529	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	3	B110,B112,B71
typical_cds_rare	Chr4	10406532	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	3	A14,A23,B136
lof_cds	Chr4	10406534	TCA	T	INDEL	2bp_deletion	frameshift_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	1	A14
typical_cds_rare	Chr4	10406534	TCA	T	INDEL	2bp_deletion	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	1	A14
lof_cds	Chr4	10406567	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	20	A14,A19,B1,B108,B117,B119,B42,B43,B48,B66,B7,B95,C13,C14,C26,C38,C43,C53,C64,D1
typical_cds_rare	Chr4	10406578	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	1	B2
lof_cds	Chr4	10406581	T	TGA	INDEL	2bp_insertion	frameshift_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	1	B110
typical_cds_rare	Chr4	10406581	T	TGA	INDEL	2bp_insertion	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	1	B110
lof_cds	Chr4	10406582	C	CCG	INDEL	2bp_insertion	frameshift_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	1	B110
typical_cds_rare	Chr4	10406582	C	CCG	INDEL	2bp_insertion	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	1	B110
lof_cds	Chr4	10406587	T	TCC	INDEL	2bp_insertion	frameshift_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	1	B110
typical_cds_rare	Chr4	10406587	T	TCC	INDEL	2bp_insertion	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	1	B110
typical_cds_rare	Chr4	10406591	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	1	B129
lof_cds	Chr4	10406597	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	10	A6,B106,B17,B54,B64,B80,C13,C20,C4,D11
lof_cds	Chr4	10406608	TCA	T	INDEL	2bp_deletion	frameshift_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	4	B103,B56,C44,C62
typical_cds_rare	Chr4	10406608	TCA	T	INDEL	2bp_deletion	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	4	B103,B56,C44,C62
typical_cds_rare	Chr4	10406613	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	1	B2
typical_cds_rare	Chr4	10406623	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	1	B2
typical_cds_rare	Chr4	10406636	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	1	A14
typical_cds_rare	Chr4	10406660	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	2	B120,B62
lof_cds	Chr4	10406707	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	4	B110,B140,C62,C67
typical_cds_rare	Chr4	10406707	TC	T	INDEL	1bp_deletion	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	4	B110,B140,C62,C67
lof_cds	Chr4	10406714	CGT	C	INDEL	2bp_deletion	frameshift_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	4	B110,B140,C62,C67
typical_cds_rare	Chr4	10406714	CGT	C	INDEL	2bp_deletion	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	4	B110,B140,C62,C67
typical_cds_rare	Chr4	10406723	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	2	C9,D2
typical_cds_rare	Chr4	10406726	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	1	B22
typical_cds_rare	Chr4	10406737	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	1	C15
typical_cds_rare	Chr4	10406750	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	4	B105,C50,C79,D9
typical_cds_rare	Chr4	10406757	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	4	A4,B10,B119,C51
typical_cds_rare	Chr4	10406780	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	3	B104,B131,D6
lof_cds	Chr4	10406793	A	AGC	INDEL	2bp_insertion	frameshift_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	49	A1,A11,A18,A2,A23,A4,A8,B10,B100,B107,B108,B109,B112,B117,B118,B119,B126,B127,B130,B132,B140,B19,B29,B3,B40,B46,B5,B51,B52,B59,B60,B63,B66,B80,B87,B9,B94,C15,C26,C34,C40,C43,C49,C51,C59,C70,C84,D1,D6
lof_cds	Chr4	10406795	CCT	C	INDEL	2bp_deletion	frameshift_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	56	A1,A11,A18,A2,A23,A4,A6,A8,B10,B100,B107,B108,B109,B112,B117,B118,B119,B126,B127,B130,B132,B140,B19,B29,B3,B40,B46,B5,B51,B52,B53,B59,B60,B63,B66,B71,B80,B87,B88,B9,B94,C15,C28,C33,C34,C40,C43,C49,C51,C52,C59,C70,C80,C84,D1,D6
lof_cds	Chr4	10406816	ATG	A	INDEL	2bp_deletion	frameshift_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	39	A1,A18,A2,A23,A8,B100,B107,B108,B109,B117,B118,B120,B127,B132,B140,B19,B29,B3,B40,B46,B5,B50,B52,B59,B63,B66,B80,B9,B94,C15,C18,C26,C43,C49,C51,C59,C84,D1,D6
lof_cds	Chr4	10406819	C	CTT	INDEL	2bp_insertion	frameshift_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	40	A1,A18,A2,A23,A8,B10,B100,B107,B108,B109,B117,B118,B120,B127,B132,B140,B19,B29,B3,B40,B46,B5,B50,B52,B59,B63,B66,B80,B9,B94,C15,C18,C26,C43,C49,C51,C59,C84,D1,D6
lof_cds	Chr4	10406821	TGC	T	INDEL	2bp_deletion	frameshift_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	4	A4,B10,C51,C70
typical_cds_rare	Chr4	10406821	TGC	T	INDEL	2bp_deletion	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	4	A4,B10,C51,C70
lof_cds	Chr4	10406825	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	3	A4,C51,C70
typical_cds_rare	Chr4	10406825	CA	C	INDEL	1bp_deletion	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	3	A4,C51,C70
lof_cds	Chr4	10406828	G	GT	INDEL	1bp_insertion	frameshift_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	3	A4,C51,C70
typical_cds_rare	Chr4	10406828	G	GT	INDEL	1bp_insertion	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	3	A4,C51,C70
typical_cds_rare	Chr4	10406844	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	5	B112,B126,B129,B130,B59
typical_cds_rare	Chr4	10406848	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	2	B17,B54
typical_cds_rare	Chr4	10406861	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	4	B34,B58,C46,C53
typical_cds_rare	Chr4	10406888	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	3	B107,B16,B51
lof_cds	Chr4	10406897	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	2	A5,B137
typical_cds_rare	Chr4	10406897	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	2	A5,B137
lof_cds	Chr4	10406911	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	2	B76,C46
typical_cds_rare	Chr4	10406911	A	AT	INDEL	1bp_insertion	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	2	B76,C46
lof_cds	Chr4	10406915	GC	G	INDEL	1bp_deletion	frameshift_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	8	A11,B112,B32,B34,B77,C1,C26,D1
lof_cds	Chr4	10407007	ATT	A	INDEL	2bp_deletion	frameshift_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	1	B2
typical_cds_rare	Chr4	10407007	ATT	A	INDEL	2bp_deletion	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	1	B2
lof_cds	Chr4	10407049	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	174	A10,A13,A14,A15,A19,A21,A22,A24,A3,A4,A5,A7,A8,A9,B1,B100,B101,B102,B103,B105,B106,B107,B108,B109,B11,B110,B111,B112,B115,B118,B12,B120,B121,B122,B123,B124,B125,B126,B128,B13,B131,B133,B136,B137,B138,B14,B140,B15,B18,B2,B20,B23,B24,B25,B26,B27,B28,B30,B33,B34,B35,B36,B38,B39,B4,B40,B41,B45,B46,B49,B50,B51,B52,B53,B54,B56,B59,B6,B60,B61,B64,B67,B68,B69,B7,B70,B71,B72,B74,B75,B76,B77,B78,B80,B81,B82,B85,B86,B88,B89,B9,B90,B91,B92,B93,B94,B96,B97,B98,B99,C1,C11,C12,C13,C14,C16,C18,C2,C21,C22,C24,C25,C26,C27,C29,C30,C32,C33,C35,C37,C38,C39,C4,C41,C42,C44,C46,C47,C48,C50,C51,C53,C54,C55,C57,C58,C59,C60,C61,C63,C64,C65,C67,C68,C69,C70,C71,C73,C78,C8,C81,C82,C83,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D8
lof_cds	Chr4	10407052	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	163	A10,A13,A14,A19,A21,A22,A24,A3,A4,A5,A7,A8,A9,B1,B100,B101,B102,B103,B105,B106,B107,B108,B109,B11,B110,B112,B115,B118,B12,B120,B121,B122,B123,B124,B125,B126,B128,B13,B131,B133,B136,B137,B138,B14,B140,B15,B18,B2,B20,B23,B24,B25,B26,B27,B33,B35,B36,B38,B39,B4,B40,B41,B45,B46,B49,B50,B51,B52,B53,B54,B56,B59,B6,B60,B61,B64,B68,B69,B7,B70,B71,B72,B74,B75,B76,B77,B78,B80,B81,B82,B85,B86,B88,B89,B9,B90,B91,B92,B93,B94,B96,B97,B99,C1,C11,C12,C13,C14,C18,C2,C21,C22,C24,C25,C26,C27,C29,C30,C32,C33,C35,C37,C38,C39,C4,C41,C42,C44,C46,C50,C51,C53,C54,C55,C57,C58,C59,C60,C61,C63,C64,C65,C67,C68,C69,C70,C71,C73,C78,C8,C81,C82,C83,C86,C87,C9,D1,D10,D11,D2,D4,D5,D8
typical_cds_rare	Chr4	10407059	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	5	B103,B30,C17,C5,C76
typical_cds_rare	Chr4	10407087	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	5	A22,B110,B72,C24,C52
typical_cds_rare	Chr4	10407136	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	2	B2,C24
typical_cds_rare	Chr4	10407140	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	2	B140,B77
lof_cds	Chr4	10407170	AAC	A	INDEL	2bp_deletion	frameshift_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	18	A16,A22,B103,B13,B139,B30,B36,B87,C17,C30,C34,C35,C5,C67,C7,C72,C75,C76
lof_cds	Chr4	10407178	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	9	A3,B5,B52,B76,B91,B98,C36,C48,D5
typical_cds_rare	Chr4	10407188	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	3	A4,C19,C85
typical_cds_rare	Chr4	10407206	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	4	B129,B140,B91,D7
typical_cds_rare	Chr4	10407238	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	1	B69
typical_cds_rare	Chr4	10407248	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	3	B95,B98,C24
lof_cds	Chr4	10407271	G	GCC	INDEL	2bp_insertion	frameshift_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	72	A10,A20,A22,A7,A8,B101,B105,B109,B110,B113,B119,B125,B13,B131,B138,B15,B17,B23,B25,B26,B33,B35,B4,B41,B45,B49,B53,B56,B57,B60,B64,B68,B70,B71,B75,B81,B82,B86,B89,B9,B94,B96,B97,B99,C1,C16,C21,C23,C25,C30,C32,C35,C36,C38,C39,C42,C46,C51,C54,C57,C59,C63,C68,C70,C71,C82,C9,D1,D10,D11,D2,D5
typical_cds_rare	Chr4	10407314	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	4	C32,C68,C86,D11
lof_cds	Chr4	10407333	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	33	A10,A18,A19,A20,A21,B105,B114,B115,B117,B12,B121,B122,B133,B139,B15,B18,B22,B47,B48,B60,B78,B79,C16,C20,C23,C43,C52,C59,C61,C70,C75,C78,D4
lof_cds	Chr4	10407413	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	52	A13,A2,A24,A6,B104,B106,B108,B11,B114,B16,B25,B29,B49,B5,B56,B58,B60,B61,B65,B69,B71,B73,B74,B8,B82,B84,B94,B95,B96,C11,C12,C17,C2,C20,C30,C38,C4,C41,C42,C50,C51,C58,C60,C62,C66,C69,C71,C72,C78,C79,C80,D2
typical_cds_rare	Chr4	10407440	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	3	B22,B23,C39
typical_cds_rare	Chr4	10407441	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	1	C37
lof_cds	Chr4	10407454	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	1	D11
typical_cds_rare	Chr4	10407454	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	1	D11
typical_cds_rare	Chr4	10407462	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	5	B129,B135,B140,B91,D7
lof_cds	Chr4	10407470	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	14	A10,A15,A21,A22,B11,B110,B112,B115,B89,C21,C42,C63,D4,D6
typical_cds_rare	Chr4	10407491	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	1	C24
lof_cds	Chr4	10407507	CGT	C	INDEL	2bp_deletion	frameshift_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	47	A7,B101,B105,B109,B119,B125,B131,B138,B35,B4,B45,B49,B56,B57,B60,B70,B71,B75,B82,B86,B9,B94,B96,C1,C16,C21,C23,C25,C34,C35,C36,C38,C42,C46,C51,C54,C57,C59,C63,C70,C82,C9,D1,D10,D11,D2,D5
typical_cds_rare	Chr4	10407510	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	1	B104
typical_cds_rare	Chr4	10407584	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131022977	SmilChr04G000827	131022977	rna-XM_057952517.1	1	C37