source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr4	35531439	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	2	B125,C41
typical_cds_rare	Chr4	35531439	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	2	B125,C41
typical_cds_rare	Chr4	35531467	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	1	B140
lof_cds	Chr4	35531469	A	ACC	INDEL	2bp_insertion	frameshift_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	19	A19,A2,A8,B100,B109,B3,B35,B38,B39,B74,B87,C19,C4,C45,C57,C78,C79,C82,D9
lof_cds	Chr4	35531470	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	19	A19,A2,A8,B100,B109,B3,B35,B38,B39,B74,B87,C19,C4,C45,C57,C78,C79,C82,D9
typical_cds_rare	Chr4	35531504	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	2	B115,B78
lof_cds	Chr4	35531524	C	CAA	INDEL	2bp_insertion	frameshift_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	153	A1,A10,A11,A16,A18,A19,A2,A20,A21,A22,A23,A3,A7,A8,A9,B10,B100,B101,B103,B104,B108,B109,B111,B113,B115,B117,B12,B122,B123,B124,B126,B127,B128,B131,B134,B135,B136,B138,B139,B140,B2,B21,B23,B24,B25,B26,B27,B3,B30,B31,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B47,B52,B55,B56,B57,B59,B6,B60,B64,B68,B69,B70,B71,B74,B75,B76,B77,B78,B79,B82,B83,B85,B86,B87,B88,B89,B93,B96,B98,C11,C13,C14,C15,C18,C19,C2,C20,C21,C22,C23,C24,C28,C32,C37,C38,C39,C4,C40,C42,C43,C44,C45,C47,C48,C49,C5,C50,C54,C55,C57,C59,C60,C61,C63,C65,C67,C68,C69,C7,C72,C73,C74,C75,C76,C77,C79,C80,C81,C82,C85,C86,C87,C9,D10,D11,D2,D4,D6,D7,D8
typical_cds_rare	Chr4	35531596	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	2	B27,C43
lof_cds	Chr4	35531598	G	GTA	INDEL	2bp_insertion	frameshift_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	80	A14,A4,A7,A9,B102,B104,B105,B106,B107,B109,B119,B121,B129,B13,B130,B134,B14,B15,B18,B19,B2,B22,B29,B33,B34,B36,B40,B44,B49,B5,B54,B59,B61,B65,B7,B70,B72,B74,B77,B78,B79,B8,B83,B9,B91,C12,C15,C17,C19,C20,C24,C28,C29,C30,C31,C33,C35,C38,C40,C42,C45,C46,C48,C51,C52,C53,C54,C60,C65,C70,C71,C74,C75,C77,C8,C80,C81,C83,C84,D1
typical_cds_rare	Chr4	35531658	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	3	B140,C21,C29
lof_cds	Chr4	35531662	C	CTT	INDEL	2bp_insertion	frameshift_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	139	A1,A11,A16,A18,A19,A2,A21,A3,A4,A6,A7,B10,B102,B105,B108,B109,B111,B113,B114,B115,B117,B119,B12,B121,B123,B124,B126,B127,B129,B13,B130,B135,B136,B137,B14,B140,B15,B17,B18,B19,B21,B22,B24,B26,B27,B29,B3,B32,B38,B39,B4,B41,B42,B43,B44,B45,B47,B49,B5,B51,B52,B54,B55,B56,B57,B64,B65,B68,B69,B7,B70,B72,B74,B75,B83,B87,B89,B9,B95,B96,B97,B99,C1,C10,C11,C13,C15,C19,C21,C22,C23,C25,C26,C27,C28,C29,C3,C39,C4,C40,C41,C42,C44,C45,C46,C47,C48,C50,C52,C53,C54,C55,C57,C60,C61,C65,C67,C69,C70,C71,C73,C74,C75,C76,C78,C79,C8,C83,C85,C86,C9,D1,D11,D2,D3,D4,D5,D7,D9
typical_cds_rare	Chr4	35531667	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	1	D7
lof_cds	Chr4	35531680	GTT	G	INDEL	2bp_deletion	frameshift_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	79	A14,A4,A7,A9,B102,B104,B105,B106,B109,B119,B121,B129,B13,B130,B134,B14,B15,B18,B19,B2,B22,B29,B33,B34,B36,B40,B49,B5,B54,B59,B61,B65,B7,B70,B72,B74,B77,B78,B79,B8,B83,B9,B91,C12,C15,C17,C19,C20,C24,C28,C29,C30,C31,C33,C35,C38,C40,C42,C45,C46,C48,C5,C51,C52,C53,C54,C60,C65,C70,C71,C74,C75,C77,C8,C80,C81,C83,C84,D1
lof_cds	Chr4	35531742	CTG	C	INDEL	2bp_deletion	frameshift_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	21	A19,B10,B134,B135,B136,B2,B23,B36,B38,B39,B93,B98,C13,C27,C37,C43,C55,C7,C73,C76,D1
typical_cds_rare	Chr4	35531804	TC	*	INDEL	1bp_deletion	CDS_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	5	A2,B111,B81,C2,C66
lof_cds	Chr4	35531898	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	167	A1,A10,A11,A13,A14,A15,A18,A2,A20,A21,A22,A24,A25,A3,A4,A5,A8,A9,B1,B100,B101,B102,B103,B105,B109,B110,B111,B112,B115,B117,B118,B119,B120,B121,B122,B123,B124,B125,B126,B128,B13,B130,B131,B132,B133,B138,B139,B14,B15,B16,B18,B20,B22,B24,B25,B26,B3,B30,B31,B32,B33,B34,B35,B37,B38,B4,B40,B43,B44,B47,B48,B49,B5,B50,B52,B53,B54,B56,B57,B59,B6,B60,B65,B66,B67,B7,B71,B72,B73,B74,B75,B76,B77,B78,B79,B8,B81,B82,B83,B85,B9,B90,B92,B94,B95,B96,B97,B98,B99,C10,C12,C14,C15,C16,C18,C19,C2,C20,C21,C26,C28,C3,C33,C34,C35,C36,C40,C41,C42,C44,C45,C49,C5,C50,C51,C52,C53,C54,C56,C57,C58,C6,C60,C61,C62,C63,C64,C66,C67,C7,C70,C73,C74,C77,C78,C80,C81,C82,C83,C9,D10,D11,D2,D3,D4,D5,D6
lof_cds	Chr4	35531903	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	3	A1,B25,C23
typical_cds_rare	Chr4	35531903	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	3	A1,B25,C23
lof_cds	Chr4	35531905	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	181	A1,A10,A11,A13,A14,A15,A18,A19,A2,A20,A21,A22,A24,A25,A3,A4,A5,A8,A9,B1,B10,B100,B101,B102,B103,B105,B109,B110,B111,B112,B115,B118,B119,B120,B121,B122,B123,B124,B125,B126,B128,B13,B130,B131,B132,B133,B134,B135,B138,B139,B14,B15,B16,B18,B20,B22,B24,B25,B26,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B42,B43,B44,B47,B48,B49,B5,B50,B52,B53,B54,B56,B57,B59,B6,B60,B61,B65,B66,B67,B7,B71,B72,B73,B74,B75,B76,B77,B78,B79,B8,B81,B82,B83,B85,B9,B90,B92,B93,B94,B95,B96,B97,B98,B99,C10,C12,C14,C15,C16,C18,C19,C2,C20,C21,C24,C26,C27,C28,C3,C33,C34,C35,C36,C40,C41,C42,C43,C44,C45,C47,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C6,C60,C61,C62,C63,C64,C66,C67,C7,C70,C73,C74,C77,C78,C80,C81,C82,C83,C9,D1,D10,D11,D2,D3,D4,D5,D6
lof_cds	Chr4	35531920	GC	G	INDEL	1bp_deletion	frameshift_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	169	A1,A10,A11,A13,A14,A15,A18,A2,A20,A21,A22,A24,A25,A3,A4,A5,A8,A9,B1,B100,B101,B102,B103,B104,B105,B109,B110,B111,B112,B118,B119,B120,B121,B122,B123,B124,B125,B126,B128,B13,B130,B131,B132,B133,B135,B138,B139,B14,B15,B16,B18,B20,B21,B22,B24,B25,B26,B3,B30,B31,B32,B33,B34,B35,B37,B4,B40,B43,B44,B47,B48,B49,B5,B50,B53,B54,B56,B57,B59,B6,B60,B61,B65,B66,B67,B7,B71,B72,B73,B74,B75,B76,B77,B79,B8,B81,B82,B83,B85,B9,B90,B92,B94,B95,B96,B97,B98,B99,C10,C12,C14,C15,C16,C18,C19,C2,C20,C21,C24,C26,C28,C3,C33,C34,C35,C36,C40,C41,C42,C43,C44,C45,C47,C48,C49,C5,C50,C51,C52,C53,C54,C56,C57,C58,C6,C60,C62,C63,C64,C66,C67,C7,C70,C73,C74,C77,C78,C80,C81,C82,C83,C9,D10,D11,D2,D3,D4,D5,D6
lof_cds	Chr4	35531941	ATC	A	INDEL	2bp_deletion	frameshift_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	1	C14
typical_cds_rare	Chr4	35531941	ATC	A	INDEL	2bp_deletion	CDS_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	1	C14
lof_cds	Chr4	35531946	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	1	C14
typical_cds_rare	Chr4	35531946	GA	G	INDEL	1bp_deletion	CDS_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	1	C14
lof_cds	Chr4	35531957	A	AC	INDEL	1bp_insertion	frameshift_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	194	A1,A10,A11,A13,A14,A15,A18,A19,A2,A20,A21,A22,A24,A25,A3,A4,A5,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B109,B110,B111,B112,B113,B115,B118,B119,B120,B121,B122,B123,B124,B125,B126,B128,B13,B130,B131,B132,B133,B134,B135,B136,B138,B139,B14,B15,B16,B18,B20,B21,B22,B24,B25,B26,B28,B29,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B42,B43,B44,B45,B47,B48,B49,B5,B50,B52,B53,B54,B56,B57,B59,B6,B60,B61,B62,B64,B65,B66,B67,B7,B71,B73,B74,B75,B76,B77,B78,B79,B8,B81,B82,B83,B85,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C12,C14,C15,C16,C18,C19,C2,C20,C21,C24,C25,C26,C27,C28,C29,C3,C33,C34,C35,C36,C40,C41,C42,C43,C44,C45,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C62,C63,C64,C66,C67,C7,C70,C73,C74,C77,C78,C80,C81,C82,C83,C9,D1,D10,D11,D2,D3,D4,D5,D6
typical_cds_rare	Chr4	35532090	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	1	D10
lof_cds	Chr4	35532097	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	134	A11,A13,A15,A20,A21,A24,A25,A3,A4,A5,B1,B10,B101,B102,B103,B105,B107,B109,B110,B112,B113,B118,B119,B12,B120,B121,B124,B126,B128,B13,B130,B131,B132,B133,B135,B136,B139,B14,B15,B16,B18,B20,B21,B22,B28,B3,B31,B32,B36,B37,B39,B42,B43,B45,B47,B48,B49,B5,B50,B53,B54,B57,B61,B62,B66,B67,B7,B72,B74,B75,B79,B8,B80,B81,B83,B84,B85,B89,B9,B91,B92,B93,B95,B96,B97,B98,C1,C10,C12,C14,C15,C16,C17,C19,C21,C24,C25,C26,C27,C29,C3,C33,C35,C36,C40,C41,C42,C43,C45,C46,C48,C49,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C62,C64,C66,C67,C73,C78,C79,C80,C82,C83,D3,D5
typical_cds_rare	Chr4	35532103	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	3	B130,B50,B84
lof_cds	Chr4	35532104	A	AGC	INDEL	2bp_insertion	frameshift_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	121	A14,A16,A18,A2,A23,A4,A7,A9,B102,B104,B106,B107,B108,B111,B115,B117,B119,B12,B121,B122,B123,B124,B126,B127,B129,B13,B130,B134,B14,B140,B18,B2,B22,B24,B26,B27,B29,B31,B33,B34,B4,B40,B44,B47,B49,B5,B52,B54,B55,B56,B59,B6,B60,B64,B68,B69,B7,B70,B71,B72,B77,B78,B79,B8,B82,B83,B86,B88,B91,B96,B98,C11,C12,C17,C19,C2,C20,C21,C28,C30,C32,C33,C35,C37,C38,C4,C40,C42,C43,C45,C47,C48,C5,C51,C53,C57,C60,C61,C63,C65,C67,C68,C69,C7,C70,C71,C72,C74,C75,C77,C80,C81,C83,C86,C9,D1,D10,D11,D2,D4,D8
lof_cds	Chr4	35532138	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	61	A1,A16,A2,A20,A7,B101,B109,B113,B115,B124,B128,B130,B135,B26,B3,B30,B31,B35,B4,B44,B55,B56,B64,B68,B70,B71,B75,B82,B83,B84,B87,B89,B96,C15,C19,C2,C21,C23,C28,C32,C39,C4,C40,C42,C45,C47,C48,C54,C57,C59,C60,C61,C65,C68,C74,C78,C79,C85,C86,D2,D9
lof_cds	Chr4	35532144	G	GT	INDEL	1bp_insertion	frameshift_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	62	A1,A16,A2,A20,A7,B101,B109,B113,B115,B124,B128,B130,B135,B26,B3,B30,B31,B35,B4,B44,B55,B56,B64,B68,B70,B71,B74,B75,B82,B83,B84,B87,B89,B96,C15,C19,C2,C21,C23,C28,C32,C39,C4,C40,C42,C45,C47,C48,C54,C57,C59,C60,C61,C65,C68,C74,C78,C79,C85,C86,D2,D9
lof_cds	Chr4	35532146	A	ACG	INDEL	2bp_insertion	frameshift_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	66	A1,A16,A2,A20,A7,A8,B100,B101,B109,B113,B115,B124,B128,B130,B135,B26,B3,B30,B31,B35,B4,B44,B50,B55,B56,B64,B68,B70,B71,B74,B75,B82,B83,B84,B87,B89,B96,C15,C19,C2,C21,C23,C28,C32,C39,C4,C40,C42,C45,C47,C48,C54,C57,C59,C60,C61,C65,C68,C74,C78,C79,C85,C86,C9,D2,D9
typical_cds_rare	Chr4	35532151	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	1	B13
lof_cds	Chr4	35532181	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	135	A1,A13,A14,A15,A2,A20,A21,A22,A24,A25,A3,A4,A7,B100,B101,B102,B103,B105,B107,B108,B109,B110,B111,B115,B117,B118,B119,B12,B120,B122,B123,B124,B126,B128,B13,B131,B132,B133,B135,B136,B139,B14,B15,B16,B18,B19,B20,B24,B3,B30,B31,B35,B37,B42,B43,B47,B48,B50,B53,B54,B56,B57,B61,B62,B66,B67,B7,B71,B72,B75,B78,B8,B80,B82,B84,B86,B89,B90,B92,B93,B94,B95,B99,C1,C10,C14,C16,C17,C18,C19,C2,C20,C21,C24,C25,C26,C27,C28,C29,C36,C37,C40,C41,C43,C45,C46,C47,C5,C50,C51,C52,C53,C55,C56,C57,C59,C60,C62,C63,C64,C66,C7,C70,C72,C73,C77,C82,C84,C87,C9,D11,D4,D5,D6,D7
typical_cds_rare	Chr4	35532188	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	2	B63,C53
typical_cds_rare	Chr4	35532334	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	2	B115,B78
typical_cds_rare	Chr4	35532349	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	2	B130,B84
lof_cds	Chr4	35532358	AAG	A	INDEL	2bp_deletion	frameshift_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	5	B139,B28,B47,B85,B94
typical_cds_rare	Chr4	35532358	AAG	A	INDEL	2bp_deletion	CDS_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	5	B139,B28,B47,B85,B94
lof_cds	Chr4	35532363	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	6	B139,B28,B47,B85,B88,B94
typical_cds_rare	Chr4	35532382	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	2	B40,C77
lof_cds	Chr4	35532388	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	70	A14,A24,A4,A7,A9,B102,B103,B104,B105,B106,B107,B109,B119,B121,B129,B13,B134,B18,B2,B22,B29,B33,B34,B40,B49,B5,B54,B59,B61,B65,B7,B70,B72,B77,B78,B79,B8,B83,B9,B91,C12,C15,C19,C20,C24,C29,C30,C31,C35,C38,C40,C42,C46,C48,C5,C51,C53,C54,C60,C65,C70,C74,C75,C77,C8,C80,C81,C83,C84,D1
typical_cds_rare	Chr4	35532389	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	4	B52,B6,C63,D10
lof_cds	Chr4	35532412	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC131023363	SmilChr04G002196	131023363	rna-XM_057952902.1	58	A1,A11,A2,A22,B104,B108,B111,B117,B12,B122,B124,B126,B127,B140,B24,B25,B26,B27,B33,B4,B40,B52,B55,B56,B59,B6,B68,B69,B76,B77,B79,B88,B96,B98,C11,C2,C20,C23,C37,C38,C43,C44,C49,C5,C57,C63,C67,C69,C7,C72,C77,C81,C86,D11,D2,D4,D7,D8