source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr4	50805176	TGA	T	INDEL	2bp_deletion	frameshift_variant	LOC131020306	SmilChr04G003422	131020306	rna-XM_057949037.1	1	C57
typical_cds_rare	Chr4	50805176	TGA	T	INDEL	2bp_deletion	CDS_variant	LOC131020306	SmilChr04G003422	131020306	rna-XM_057949037.1	1	C57
lof_cds	Chr4	50805275	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131020306	SmilChr04G003422	131020306	rna-XM_057949037.1	162	A10,A11,A13,A14,A16,A18,A22,A23,A25,A3,A5,A6,A7,A8,A9,B1,B102,B103,B106,B107,B108,B11,B111,B113,B114,B115,B118,B119,B12,B120,B121,B122,B124,B125,B127,B129,B13,B130,B132,B133,B134,B135,B137,B138,B139,B14,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B31,B33,B35,B36,B38,B39,B41,B42,B43,B45,B46,B48,B5,B51,B52,B53,B54,B55,B56,B57,B60,B61,B63,B64,B65,B66,B7,B72,B73,B75,B76,B77,B8,B80,B81,B82,B85,B86,B89,B91,B93,B96,B98,C1,C10,C12,C14,C15,C16,C17,C18,C20,C23,C26,C3,C33,C35,C38,C39,C4,C40,C42,C43,C44,C47,C48,C49,C51,C52,C53,C55,C57,C59,C6,C60,C61,C63,C64,C66,C67,C70,C71,C72,C73,C76,C80,C81,C83,C85,C86,C87,C9,D10,D3,D4,D5,D8,D9
lof_cds	Chr4	50805277	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131020306	SmilChr04G003422	131020306	rna-XM_057949037.1	163	A10,A11,A13,A14,A16,A18,A22,A23,A25,A3,A5,A6,A7,A8,A9,B1,B102,B103,B106,B107,B108,B11,B111,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B124,B125,B127,B129,B13,B130,B132,B133,B134,B135,B137,B138,B139,B14,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B31,B33,B35,B36,B38,B39,B41,B42,B43,B45,B46,B48,B5,B51,B52,B53,B54,B55,B56,B57,B60,B61,B63,B64,B65,B66,B7,B72,B73,B75,B76,B77,B8,B80,B81,B82,B85,B86,B89,B91,B93,B96,B98,C1,C10,C12,C14,C15,C16,C17,C18,C20,C23,C26,C3,C33,C35,C38,C39,C4,C40,C42,C43,C44,C47,C48,C49,C51,C52,C53,C55,C57,C59,C6,C60,C61,C63,C64,C66,C67,C70,C71,C72,C73,C76,C80,C81,C83,C85,C86,C87,C9,D10,D3,D4,D5,D8,D9
typical_cds_rare	Chr4	50805360	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131020306	SmilChr04G003422	131020306	rna-XM_057949037.1	3	B4,C5,D2
lof_cds	Chr4	50805672	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131020306	SmilChr04G003422	131020306	rna-XM_057949037.1	185	A1,A10,A11,A13,A16,A18,A19,A21,A22,A23,A24,A25,A3,A5,A6,A7,A8,A9,B1,B10,B102,B103,B106,B107,B11,B111,B112,B113,B114,B115,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B132,B133,B135,B136,B137,B138,B139,B14,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B31,B33,B34,B35,B36,B37,B38,B4,B41,B42,B43,B45,B46,B48,B5,B51,B52,B53,B54,B55,B56,B57,B59,B60,B61,B63,B64,B65,B66,B7,B72,B73,B75,B76,B77,B8,B80,B81,B82,B84,B85,B86,B89,B91,B93,B94,B95,B96,B97,B98,C1,C10,C12,C14,C15,C16,C17,C18,C20,C23,C26,C27,C3,C33,C34,C35,C38,C39,C4,C40,C42,C43,C44,C45,C47,C48,C49,C5,C51,C52,C53,C55,C57,C58,C59,C6,C60,C61,C62,C63,C64,C66,C67,C7,C70,C71,C72,C73,C76,C79,C80,C81,C83,C85,C86,C87,C9,D10,D2,D3,D4,D5,D8,D9
lof_cds	Chr4	50805674	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131020306	SmilChr04G003422	131020306	rna-XM_057949037.1	179	A1,A10,A11,A13,A14,A16,A18,A19,A21,A22,A23,A24,A25,A3,A5,A6,A7,A8,A9,B1,B10,B102,B103,B106,B107,B11,B111,B112,B113,B114,B115,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B132,B133,B135,B136,B137,B138,B139,B14,B15,B16,B17,B18,B19,B2,B20,B21,B23,B24,B25,B26,B27,B28,B29,B3,B30,B31,B33,B34,B35,B36,B37,B38,B4,B41,B42,B43,B45,B46,B48,B51,B52,B53,B54,B55,B57,B59,B60,B61,B63,B64,B65,B66,B7,B72,B73,B75,B76,B77,B8,B80,B81,B82,B85,B86,B89,B91,B93,B94,B95,B97,B98,C1,C10,C12,C14,C15,C16,C17,C18,C20,C23,C27,C3,C33,C34,C35,C38,C39,C4,C40,C42,C43,C45,C47,C48,C49,C5,C51,C52,C53,C55,C57,C58,C59,C6,C60,C61,C62,C63,C64,C66,C67,C7,C70,C71,C72,C73,C76,C79,C80,C81,C83,C85,C87,C9,D10,D11,D2,D3,D4,D5,D8,D9
typical_cds_rare	Chr4	50805688	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131020306	SmilChr04G003422	131020306	rna-XM_057949037.1	5	A7,B10,B75,C73,C74
