source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr4	54976140	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	2	B139,B4
lof_cds	Chr4	54976841	GTT	G	INDEL	2bp_deletion	frameshift_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	1	B124
typical_cds_rare	Chr4	54976841	GTT	G	INDEL	2bp_deletion	CDS_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	1	B124
typical_cds_rare	Chr4	54977588	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	2	C77,C81
typical_cds_rare	Chr4	54977790	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	1	B3
typical_cds_rare	Chr4	54977850	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	2	C32,C68
lof_cds	Chr4	54977930	GTC	G	INDEL	2bp_deletion	frameshift_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	1	A22
typical_cds_rare	Chr4	54977930	GTC	G	INDEL	2bp_deletion	CDS_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	1	A22
lof_cds	Chr4	54978137	GCA	G	INDEL	2bp_deletion	frameshift_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	80	A10,A2,A20,A24,A7,A8,A9,B1,B102,B103,B104,B107,B110,B111,B113,B114,B115,B121,B125,B129,B134,B135,B15,B16,B18,B2,B22,B24,B25,B28,B30,B39,B4,B40,B44,B47,B48,B55,B58,B62,B65,B66,B67,B76,B78,B79,B82,B9,B92,B93,B98,C1,C18,C2,C22,C29,C30,C32,C33,C38,C39,C40,C42,C47,C48,C55,C58,C59,C6,C61,C64,C68,C71,C73,C79,C80,D3,D4,D8,D9
lof_cds	Chr4	54978142	G	GC	INDEL	1bp_insertion	frameshift_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	77	A10,A2,A20,A24,A7,A8,A9,B1,B102,B103,B104,B107,B110,B111,B113,B114,B115,B121,B125,B129,B134,B135,B15,B16,B18,B2,B22,B24,B25,B28,B30,B39,B4,B40,B44,B47,B48,B55,B58,B62,B65,B66,B76,B78,B79,B82,B9,B92,B93,B98,C1,C18,C2,C29,C32,C33,C38,C39,C40,C42,C47,C48,C55,C58,C59,C6,C61,C64,C68,C71,C73,C79,C80,D3,D4,D8,D9
lof_cds	Chr4	54978144	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	79	A10,A2,A20,A24,A7,A8,A9,B1,B102,B103,B104,B107,B110,B111,B113,B114,B115,B121,B125,B129,B134,B135,B15,B16,B18,B2,B22,B24,B25,B28,B30,B39,B4,B40,B44,B47,B48,B55,B58,B62,B65,B66,B67,B76,B78,B79,B82,B92,B93,B98,C1,C18,C2,C29,C32,C33,C38,C39,C40,C41,C42,C47,C48,C55,C58,C59,C6,C61,C64,C66,C68,C71,C73,C79,C80,D3,D4,D8,D9
typical_cds_rare	Chr4	54978148	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	5	A23,B110,B126,B30,D11
lof_cds	Chr4	54978183	C	CCA	INDEL	2bp_insertion	frameshift_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	7	B103,B30,B67,B96,C32,C48,C68
lof_cds	Chr4	54978185	ATG	A	INDEL	2bp_deletion	frameshift_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	5	B103,B30,B67,B96,C48
typical_cds_rare	Chr4	54978185	ATG	A	INDEL	2bp_deletion	CDS_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	5	B103,B30,B67,B96,C48
lof_cds	Chr4	54978203	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	6	B103,B96,C32,C48,C68,D4
lof_cds	Chr4	54978224	GCC	G	INDEL	2bp_deletion	frameshift_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	7	B103,B67,B96,C32,C48,C68,D4
lof_cds	Chr4	54978228	G	GTC	INDEL	2bp_insertion	frameshift_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	6	B103,B67,B96,C10,C48,D4
lof_cds	Chr4	54978233	GGA	G	INDEL	2bp_deletion	frameshift_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	9	A5,B103,B57,B64,B96,C10,C48,D11,D4
lof_cds	Chr4	54978236	A	ACG	INDEL	2bp_insertion	frameshift_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	4	A5,B57,B64,D11
typical_cds_rare	Chr4	54978236	A	ACG	INDEL	2bp_insertion	CDS_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	4	A5,B57,B64,D11
lof_cds	Chr4	54978273	TAG	T	INDEL	2bp_deletion	frameshift_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	27	A5,B102,B103,B12,B129,B13,B139,B19,B21,B24,B28,B49,B57,B58,B64,B70,B74,B80,C11,C2,C28,C32,C45,C59,C61,C68,D1
lof_cds	Chr4	54978277	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	27	A5,B102,B103,B12,B129,B13,B139,B19,B21,B24,B28,B49,B57,B58,B64,B70,B74,B80,C11,C2,C28,C32,C45,C59,C61,C68,D1
lof_cds	Chr4	54978282	TTG	T	INDEL	2bp_deletion	frameshift_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	27	A5,B102,B103,B12,B129,B13,B139,B19,B21,B24,B28,B49,B57,B58,B64,B70,B74,B80,C11,C2,C28,C32,C45,C59,C61,C68,D1
typical_cds_rare	Chr4	54978409	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	1	B3
lof_cds	Chr4	54978447	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	72	A10,A16,A18,A19,A2,A3,A4,A5,A6,A9,B100,B102,B109,B11,B114,B119,B124,B126,B127,B13,B14,B16,B2,B21,B23,B29,B34,B35,B5,B52,B59,B65,B66,B72,B73,B75,B76,B85,B9,B90,B91,B95,B99,C11,C12,C14,C15,C17,C18,C19,C2,C29,C3,C31,C33,C39,C4,C41,C45,C51,C63,C64,C65,C69,C70,C72,C73,C8,C80,C86,D5,D9
lof_cds	Chr4	54978451	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	64	A10,A16,A18,A19,A2,A3,A4,A5,A6,A9,B102,B109,B114,B119,B124,B126,B127,B14,B16,B2,B21,B23,B29,B35,B52,B59,B65,B66,B72,B76,B9,B90,B91,B95,B99,C11,C12,C14,C15,C17,C18,C19,C2,C21,C29,C3,C31,C33,C39,C4,C41,C45,C51,C63,C64,C65,C69,C70,C72,C73,C8,C80,C86,D9
lof_cds	Chr4	54978471	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	4	A6,A9,C17,C69
typical_cds_rare	Chr4	54978471	AG	A	INDEL	1bp_deletion	CDS_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	4	A6,A9,C17,C69
typical_cds_rare	Chr4	54978475	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	4	A6,A9,C17,C69
typical_cds_rare	Chr4	54978701	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	2	C32,C68
typical_cds_rare	Chr4	54978741	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	3	B3,B81,C21
typical_cds_rare	Chr4	54978813	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	4	B109,B131,B17,C39
typical_cds_rare	Chr4	54979072	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	1	C6
typical_cds_rare	Chr4	54979106	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	1	B41
typical_cds_rare	Chr4	54979187	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	1	B41
lof_cds	Chr4	54979196	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	1	B51
typical_cds_rare	Chr4	54979196	TG	T	INDEL	1bp_deletion	CDS_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	1	B51
typical_cds_rare	Chr4	54979324	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	2	C11,C69
typical_cds_rare	Chr4	54979465	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	1	B41
typical_cds_rare	Chr4	54979613	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	3	B3,B81,C21
typical_cds_rare	Chr4	54980868	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	1	C21
typical_cds_rare	Chr4	54980956	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	5	B109,B68,B97,C23,D11
typical_cds_rare	Chr4	54981291	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	5	A7,B70,C45,C60,D5
lof_cds	Chr4	54983181	CGA	C	INDEL	2bp_deletion	frameshift_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	85	A13,A14,A20,A22,A23,B102,B103,B109,B119,B120,B121,B126,B129,B130,B131,B134,B136,B137,B16,B17,B19,B22,B23,B26,B27,B30,B38,B40,B44,B45,B46,B53,B56,B60,B61,B62,B67,B73,B76,B77,B83,B84,B86,B88,B93,B94,B96,C1,C10,C12,C13,C14,C18,C19,C27,C28,C3,C30,C32,C33,C34,C38,C41,C42,C43,C46,C47,C48,C5,C51,C52,C56,C58,C6,C64,C69,C7,C78,C8,C83,C9,D1,D10,D5,D8
lof_cds	Chr4	54983187	CCT	C	INDEL	2bp_deletion	frameshift_variant	LOC131020796	SmilChr04G003934	131020796	rna-XM_057949819.1	87	A10,A13,A14,A18,A20,A22,A23,B102,B103,B109,B119,B120,B121,B126,B129,B130,B131,B134,B136,B137,B15,B16,B17,B19,B22,B23,B26,B27,B38,B40,B44,B45,B46,B53,B56,B60,B61,B62,B67,B73,B76,B77,B83,B84,B86,B88,B93,B94,B96,C1,C10,C12,C13,C14,C18,C27,C28,C3,C30,C32,C33,C34,C38,C41,C42,C43,C46,C47,C48,C5,C51,C52,C56,C58,C6,C64,C69,C7,C78,C8,C83,C9,D1,D10,D5,D7,D8