source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr4	55904427	AAT	A	INDEL	2bp_deletion	frameshift_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	123	A10,A11,A14,A18,A19,A22,A23,A24,A25,A3,A5,A9,B1,B101,B102,B108,B112,B113,B117,B119,B12,B124,B125,B129,B13,B130,B131,B132,B134,B135,B136,B137,B138,B139,B14,B15,B16,B17,B24,B26,B27,B29,B37,B4,B40,B42,B43,B44,B49,B52,B54,B55,B57,B59,B6,B61,B62,B63,B64,B65,B66,B67,B7,B70,B73,B78,B79,B83,B84,B85,B86,B87,B88,B94,B95,B99,C1,C10,C15,C2,C20,C22,C23,C24,C25,C30,C32,C33,C38,C39,C4,C40,C42,C45,C47,C48,C5,C54,C55,C58,C59,C6,C61,C62,C63,C64,C66,C68,C71,C72,C76,C78,C80,C83,C84,C9,D1,D10,D2,D4,D5,D7,D8
lof_cds	Chr4	55904484	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	5	A3,B12,B137,C61,C78
typical_cds_rare	Chr4	55904484	TG	T	INDEL	1bp_deletion	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	5	A3,B12,B137,C61,C78
lof_cds	Chr4	55904498	CCT	C	INDEL	2bp_deletion	frameshift_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	1	B63
typical_cds_rare	Chr4	55904498	CCT	C	INDEL	2bp_deletion	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	1	B63
typical_cds_rare	Chr4	55904521	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	5	A3,B12,B137,C61,C78
lof_cds	Chr4	55904594	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	9	A20,A4,A8,B107,B18,B68,C19,C21,C75
typical_cds_rare	Chr4	55904610	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	1	C72
typical_cds_rare	Chr4	55904685	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	3	B137,C61,C78
typical_cds_rare	Chr4	55904719	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	3	A10,C70,C75
lof_cds	Chr4	55904735	C	CCT	INDEL	2bp_insertion	frameshift_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	8	A20,A8,B107,B114,B2,B97,C21,C75
typical_cds_rare	Chr4	55904769	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	1	D7
typical_cds_rare	Chr4	55904784	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	1	A2
typical_cds_rare	Chr4	55904786	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	1	D7
typical_cds_rare	Chr4	55904869	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	5	B1,B40,B56,C79,C83
typical_cds_rare	Chr4	55904871	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	2	C77,C81
typical_cds_rare	Chr4	55904882	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	5	B1,B40,B56,C79,C83
lof_cds	Chr4	55904912	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	1	B38
typical_cds_rare	Chr4	55904912	AC	A	INDEL	1bp_deletion	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	1	B38
lof_cds	Chr4	55904956	G	GGC	INDEL	2bp_insertion	frameshift_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	6	A3,B12,B137,B68,C61,C78
lof_cds	Chr4	55904960	TAA	T	INDEL	2bp_deletion	frameshift_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	6	A3,B12,B137,B68,C61,C78
lof_cds	Chr4	55905050	T	TAG	INDEL	2bp_insertion	frameshift_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	6	B107,B114,B115,B26,C19,C75
lof_cds	Chr4	55905051	T	TTA	INDEL	2bp_insertion	stop_gained,frameshift_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	6	B107,B114,B115,B26,C19,C75
lof_cds	Chr4	55905090	GAC	G	INDEL	2bp_deletion	frameshift_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	4	B96,C1,C61,C73
typical_cds_rare	Chr4	55905090	GAC	G	INDEL	2bp_deletion	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	4	B96,C1,C61,C73
typical_cds_rare	Chr4	55905098	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	3	B40,B5,C62
typical_cds_rare	Chr4	55905120	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	4	B40,B5,C62,C83
lof_cds	Chr4	55905166	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	7	B100,B121,B35,B55,B56,B8,C73
lof_cds	Chr4	55905168	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	23	B102,B11,B139,B15,B16,B24,B25,B29,B6,B61,B62,B78,B85,B95,B99,C30,C39,C40,C48,C55,C59,C72,D2
lof_cds	Chr4	55905175	TCA	T	INDEL	2bp_deletion	frameshift_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	6	A8,B114,B2,B26,C13,C21
typical_cds_rare	Chr4	55905243	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	3	A20,B2,C13
typical_cds_rare	Chr4	55905271	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	4	A20,B2,B68,C13
lof_cds	Chr4	55905295	A	AC	INDEL	1bp_insertion	frameshift_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	10	A13,A25,B100,B46,C14,C17,C38,C67,C73,C85
typical_cds_rare	Chr4	55905313	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	1	B101
lof_cds	Chr4	55905342	A	ATT	INDEL	2bp_insertion	frameshift_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	1	B97
typical_cds_rare	Chr4	55905342	A	ATT	INDEL	2bp_insertion	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	1	B97
typical_cds_rare	Chr4	55905352	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	2	B68,C13
lof_cds	Chr4	55905360	G	GCC	INDEL	2bp_insertion	frameshift_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	15	A20,A4,A8,B107,B114,B115,B18,B2,B26,B68,B97,C13,C19,C21,C75
typical_cds_rare	Chr4	55905362	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	4	B56,B91,B96,C62
lof_cds	Chr4	55905370	G	GAT	INDEL	2bp_insertion	frameshift_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	4	A3,A9,B38,C61
typical_cds_rare	Chr4	55905370	G	GAT	INDEL	2bp_insertion	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	4	A3,A9,B38,C61
typical_cds_rare	Chr4	55905372	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	1	C80
lof_cds	Chr4	55905373	G	GAC	INDEL	2bp_insertion	frameshift_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	15	A20,A4,A8,B107,B114,B115,B18,B2,B26,B68,B97,C13,C19,C21,C75
lof_cds	Chr4	55905375	C	CG	INDEL	1bp_insertion	frameshift_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	5	B113,B17,B40,C64,C8
typical_cds_rare	Chr4	55905375	C	CG	INDEL	1bp_insertion	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	5	B113,B17,B40,C64,C8
lof_cds	Chr4	55905389	GAA	G	INDEL	2bp_deletion	frameshift_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	7	B40,B50,B56,B8,B96,C79,C82
lof_cds	Chr4	55905395	G	GGT	INDEL	2bp_insertion	frameshift_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	6	B40,B50,B56,B96,C79,C82
typical_cds_rare	Chr4	55905411	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	2	B140,B93
typical_cds_rare	Chr4	55905419	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	2	B8,C38
lof_cds	Chr4	55905455	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	1	C38
typical_cds_rare	Chr4	55905455	GA	G	INDEL	1bp_deletion	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	1	C38
lof_cds	Chr4	55905504	CG	C	INDEL	1bp_deletion	frameshift_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	2	C53,D1
typical_cds_rare	Chr4	55905504	CG	C	INDEL	1bp_deletion	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	2	C53,D1
lof_cds	Chr4	55905510	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	3	B44,C2,C80
typical_cds_rare	Chr4	55905510	T	TA	INDEL	1bp_insertion	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	3	B44,C2,C80
typical_cds_rare	Chr4	55905545	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	4	A8,B115,B18,B2
typical_cds_rare	Chr4	55905547	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	2	A1,C63
typical_cds_rare	Chr4	55905554	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	3	B39,B53,C8
typical_cds_rare	Chr4	55905557	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	1	B12
typical_cds_rare	Chr4	55905579	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	1	C22
typical_cds_rare	Chr4	55905603	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	5	B11,B85,C55,C63,C72
typical_cds_rare	Chr4	55905612	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	5	B53,B85,C79,C8,C82
lof_cds	Chr4	55905626	G	GCC	INDEL	2bp_insertion	frameshift_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	1	D10
typical_cds_rare	Chr4	55905626	G	GCC	INDEL	2bp_insertion	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	1	D10
typical_cds_rare	Chr4	55905685	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	3	A9,B88,D10
typical_cds_rare	Chr4	55905721	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131020962	SmilChr04G004088	131020962	rna-XM_057950017.1	1	B5