source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr5	1191226	ATT	A	INDEL	2bp_deletion	frameshift_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	B50
typical_cds_rare	Chr5	1191226	ATT	A	INDEL	2bp_deletion	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	B50
lof_cds	Chr5	1191230	G	GGT	INDEL	2bp_insertion	frameshift_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	8	A11,B34,B43,B50,C35,C82,D3,D8
lof_cds	Chr5	1191231	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	8	A11,B34,B43,B50,C35,C82,D3,D8
typical_cds_rare	Chr5	1191273	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	3	B125,B15,C41
typical_cds_rare	Chr5	1191293	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	2	B125,B15
lof_cds	Chr5	1191308	AAT	A	INDEL	2bp_deletion	frameshift_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	13	B122,B29,B42,B43,B65,B77,B86,B94,C23,C35,C59,C6,C64
lof_cds	Chr5	1191310	TAC	T	INDEL	2bp_deletion	frameshift_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	26	B105,B109,B113,B13,B139,B14,B19,B26,B27,B33,B36,B4,B56,B69,C45,C57,C59,C60,C71,C75,C76,C78,C8,C87,D4,D8
lof_cds	Chr5	1191315	G	GCT	INDEL	2bp_insertion	frameshift_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	14	B122,B29,B42,B43,B65,B77,B85,B86,B94,C23,C35,C59,C6,C64
lof_cds	Chr5	1191322	A	AC	INDEL	1bp_insertion	frameshift_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	8	A2,A4,B123,B48,B81,C5,C80,C84
lof_cds	Chr5	1191324	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	8	A2,A4,B123,B48,B81,C5,C80,C84
typical_cds_rare	Chr5	1191359	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	B47
typical_cds_rare	Chr5	1191362	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	C67
lof_cds	Chr5	1191378	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	14	A16,B107,B108,B12,B136,B26,B55,B75,B99,C17,C29,C31,C37,C60
lof_cds	Chr5	1191379	G	GAA	INDEL	2bp_insertion	frameshift_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	28	B111,B115,B117,B129,B132,B135,B138,B23,B32,B46,B63,B82,B87,B89,B91,B95,C12,C16,C2,C38,C44,C55,C65,C71,C82,C85,D10,D6
lof_cds	Chr5	1191382	TGC	T	INDEL	2bp_deletion	frameshift_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	27	B111,B115,B117,B129,B132,B135,B23,B32,B46,B63,B82,B87,B89,B91,B95,C12,C16,C2,C38,C44,C55,C65,C71,C82,C85,D10,D6
typical_cds_rare	Chr5	1191406	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	5	B132,B52,C10,C38,C62
typical_cds_rare	Chr5	1191430	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	B138
typical_cds_rare	Chr5	1191439	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	2	C19,C83
lof_cds	Chr5	1191440	A	AAT	INDEL	2bp_insertion	frameshift_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	4	A4,A7,B124,B85
typical_cds_rare	Chr5	1191440	A	AAT	INDEL	2bp_insertion	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	4	A4,A7,B124,B85
lof_cds	Chr5	1191448	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	C19
typical_cds_rare	Chr5	1191448	G	GA	INDEL	1bp_insertion	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	C19
lof_cds	Chr5	1191464	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	3	B115,B62,C66
typical_cds_rare	Chr5	1191464	G	GA	INDEL	1bp_insertion	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	3	B115,B62,C66
lof_cds	Chr5	1191467	ACT	A	INDEL	2bp_deletion	frameshift_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	2	B52,C10
typical_cds_rare	Chr5	1191467	ACT	A	INDEL	2bp_deletion	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	2	B52,C10
lof_cds	Chr5	1191471	C	CAA	INDEL	2bp_insertion	frameshift_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	2	B52,C10
typical_cds_rare	Chr5	1191471	C	CAA	INDEL	2bp_insertion	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	2	B52,C10
typical_cds_rare	Chr5	1191478	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	2	B61,C16
typical_cds_rare	Chr5	1191484	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	5	B61,C10,C16,C19,C8
typical_cds_rare	Chr5	1191498	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	B47
typical_cds_rare	Chr5	1191520	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	2	B47,C48
typical_cds_rare	Chr5	1191549	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	B104
typical_cds_rare	Chr5	1191599	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	2	B59,C75
typical_cds_rare	Chr5	1191601	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	B138
typical_cds_rare	Chr5	1191672	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	2	B118,B31
lof_cds	Chr5	1191697	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	B75
typical_cds_rare	Chr5	1191697	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	B75
typical_cds_rare	Chr5	1191730	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	4	B10,B115,B60,C27
typical_cds_rare	Chr5	1191731	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	3	B75,B96,C46
lof_cds	Chr5	1191737	T	TCA	INDEL	2bp_insertion	frameshift_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	4	B139,B19,B28,C5
typical_cds_rare	Chr5	1191737	T	TCA	INDEL	2bp_insertion	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	4	B139,B19,B28,C5
typical_cds_rare	Chr5	1191753	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	B104
lof_cds	Chr5	1191772	TTC	T	INDEL	2bp_deletion	frameshift_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	A20
typical_cds_rare	Chr5	1191772	TTC	T	INDEL	2bp_deletion	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	A20
typical_cds_rare	Chr5	1191775	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	2	B55,B96
typical_cds_rare	Chr5	1191781	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	5	A2,B139,B19,B28,C5
typical_cds_rare	Chr5	1191816	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	B55
typical_cds_rare	Chr5	1191857	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	3	B35,C18,C55
lof_cds	Chr5	1191895	C	CG	INDEL	1bp_insertion	frameshift_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	A20
typical_cds_rare	Chr5	1191895	C	CG	INDEL	1bp_insertion	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	A20
typical_cds_rare	Chr5	1191925	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	2	B86,C65
typical_cds_rare	Chr5	1191970	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	4	B138,B54,B61,D6
lof_cds	Chr5	1192013	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	4	B26,C32,C44,C68
typical_cds_rare	Chr5	1192013	GA	G	INDEL	1bp_deletion	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	4	B26,C32,C44,C68
typical_cds_rare	Chr5	1192049	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	3	B38,B95,C45
typical_cds_rare	Chr5	1192071	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	B35
typical_cds_rare	Chr5	1192125	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	A10
typical_cds_rare	Chr5	1192161	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	C8
typical_cds_rare	Chr5	1192348	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	2	A24,C51
typical_cds_rare	Chr5	1192349	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	C37
typical_cds_rare	Chr5	1192410	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	5	A14,B11,B15,B20,B6
typical_cds_rare	Chr5	1192423	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	4	A14,B11,B20,B6
typical_cds_rare	Chr5	1192449	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	5	A14,B11,B20,B6,D9
typical_cds_rare	Chr5	1192495	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	3	B76,B82,C65
typical_cds_rare	Chr5	1192526	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	5	B135,B28,B46,B71,C78
typical_cds_rare	Chr5	1192535	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	2	B118,B31
typical_cds_rare	Chr5	1192695	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	3	A10,B131,C86
typical_cds_rare	Chr5	1192743	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	4	B113,B137,B5,B77
typical_cds_rare	Chr5	1192745	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	3	B78,C8,D7
lof_cds	Chr5	1192776	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	C56
typical_cds_rare	Chr5	1192776	TC	T	INDEL	1bp_deletion	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	C56
typical_cds_rare	Chr5	1192793	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	B26
typical_cds_rare	Chr5	1192814	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	D5
lof_cds	Chr5	1192846	G	GTA	INDEL	2bp_insertion	frameshift_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	4	B113,B137,B5,B77
typical_cds_rare	Chr5	1192846	G	GTA	INDEL	2bp_insertion	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	4	B113,B137,B5,B77
lof_cds	Chr5	1192991	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	B104
typical_cds_rare	Chr5	1192991	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	B104
typical_cds_rare	Chr5	1193099	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	C87
typical_cds_rare	Chr5	1193200	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	B31
typical_cds_rare	Chr5	1193240	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	B31
lof_cds	Chr5	1193274	TTA	T	INDEL	2bp_deletion	frameshift_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	C69
typical_cds_rare	Chr5	1193274	TTA	T	INDEL	2bp_deletion	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	C69
typical_cds_rare	Chr5	1193329	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	4	B119,B135,B40,C42
typical_cds_rare	Chr5	1193356	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	2	C69,C73
lof_cds	Chr5	1193410	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	B19
typical_cds_rare	Chr5	1193410	T	TG	INDEL	1bp_insertion	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	B19
typical_cds_rare	Chr5	1193441	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	C59
typical_cds_rare	Chr5	1193444	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	2	B46,C78
typical_cds_rare	Chr5	1193447	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	B108
lof_cds	Chr5	1193471	ACT	A	INDEL	2bp_deletion	frameshift_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	55	A13,A14,A16,A18,A20,A22,A7,B100,B102,B117,B119,B125,B127,B129,B130,B131,B135,B136,B16,B2,B3,B36,B38,B39,B40,B41,B54,B65,B67,B77,B86,B90,B91,B92,B94,B95,B98,B99,C1,C22,C31,C33,C40,C42,C49,C53,C56,C61,C65,C7,C71,C74,C80,D11,D8
lof_cds	Chr5	1193477	C	CGG	INDEL	2bp_insertion	frameshift_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	56	A13,A14,A16,A18,A20,A22,A7,B100,B102,B117,B119,B125,B127,B129,B130,B131,B135,B136,B16,B2,B3,B36,B38,B39,B40,B41,B54,B65,B67,B77,B78,B86,B90,B91,B92,B94,B95,B98,B99,C1,C22,C31,C33,C40,C42,C49,C53,C56,C61,C65,C7,C71,C74,C80,D11,D8
typical_cds_rare	Chr5	1193485	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	2	B46,C78
typical_cds_rare	Chr5	1193489	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	D1
lof_cds	Chr5	1193491	A	AAG	INDEL	2bp_insertion	frameshift_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	C87
typical_cds_rare	Chr5	1193491	A	AAG	INDEL	2bp_insertion	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	C87
typical_cds_rare	Chr5	1193505	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	B42
typical_cds_rare	Chr5	1193523	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	3	B77,B86,C65
lof_cds	Chr5	1193544	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	B32
typical_cds_rare	Chr5	1193544	TG	T	INDEL	1bp_deletion	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	B32
typical_cds_rare	Chr5	1193560	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	1	C46
typical_cds_rare	Chr5	1193597	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	4	B140,B15,B32,C82
typical_cds_rare	Chr5	1193615	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	2	B94,C78
typical_cds_rare	Chr5	1193647	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	2	A8,B136
typical_cds_rare	Chr5	1193653	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	2	B64,C46
typical_cds_rare	Chr5	1193688	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	3	B110,B44,C6
typical_cds_rare	Chr5	1193690	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	3	B110,B44,C6
typical_cds_rare	Chr5	1193708	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	4	B138,B61,B98,D6
typical_cds_rare	Chr5	1193759	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026605	SmilChr05G000147	131026605	rna-XM_057956515.1	2	C16,C87