source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr5	1849828	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	3	B38,B39,C13
typical_cds_rare	Chr5	1849843	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	4	A11,B100,B24,C23
typical_cds_rare	Chr5	1849885	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	2	B104,B23
lof_cds	Chr5	1849899	T	TTA	INDEL	2bp_insertion	frameshift_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	2	B11,C37
typical_cds_rare	Chr5	1849899	T	TTA	INDEL	2bp_insertion	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	2	B11,C37
typical_cds_rare	Chr5	1849908	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	3	A11,B140,D2
lof_cds	Chr5	1849918	T	TGG	INDEL	2bp_insertion	frameshift_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	2	B69,C68
typical_cds_rare	Chr5	1849918	T	TGG	INDEL	2bp_insertion	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	2	B69,C68
lof_cds	Chr5	1849937	G	GAA	INDEL	2bp_insertion	frameshift_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	30	A18,A2,A20,A22,B113,B12,B126,B135,B139,B2,B33,B39,B41,B46,B55,B71,B72,B73,B75,B89,C15,C52,C57,C70,C72,C78,C8,C85,D4,D5
typical_cds_rare	Chr5	1849961	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	2	C4,C54
lof_cds	Chr5	1849963	TCA	T	INDEL	2bp_deletion	frameshift_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	20	A16,B101,B102,B117,B137,B3,B36,B46,B61,B97,C17,C21,C25,C31,C47,C52,C53,C6,C79,C86
lof_cds	Chr5	1849966	A	AGG	INDEL	2bp_insertion	frameshift_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	13	B117,B3,B36,B46,B61,C17,C21,C25,C31,C53,C6,C79,C86
typical_cds_rare	Chr5	1849970	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	3	A24,A7,C73
typical_cds_rare	Chr5	1849971	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	2	A10,B131
typical_cds_rare	Chr5	1849984	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	2	A10,B131
lof_cds	Chr5	1850010	GCT	G	INDEL	2bp_deletion	frameshift_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	2	B1,C30
typical_cds_rare	Chr5	1850010	GCT	G	INDEL	2bp_deletion	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	2	B1,C30
typical_cds_rare	Chr5	1850065	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	1	B36
lof_cds	Chr5	1850100	A	AAC	INDEL	2bp_insertion	frameshift_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	37	A16,A18,A23,A4,A7,A8,B107,B108,B121,B128,B138,B15,B17,B21,B49,B60,B70,B78,B79,B82,B84,B97,B98,C2,C23,C35,C4,C40,C45,C49,C54,C64,C70,C77,C80,D10,D8
typical_cds_rare	Chr5	1850138	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	1	C81
typical_cds_rare	Chr5	1850192	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	4	B117,B136,C71,D10
typical_cds_rare	Chr5	1850200	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	4	A5,B136,C71,D10
typical_cds_rare	Chr5	1850289	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	1	D10
typical_cds_rare	Chr5	1850317	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	3	B38,B39,C13
typical_cds_rare	Chr5	1850364	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	3	A3,B137,B79
typical_cds_rare	Chr5	1850366	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	4	C31,C51,C68,D4
typical_cds_rare	Chr5	1850419	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	1	B13
lof_cds	Chr5	1850423	TCG	T	INDEL	2bp_deletion	frameshift_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	74	A1,A14,A15,A16,A18,A2,A23,B101,B104,B105,B113,B114,B12,B120,B121,B122,B128,B129,B132,B15,B18,B21,B22,B23,B25,B30,B4,B49,B52,B60,B68,B70,B71,B72,B75,B78,B81,B82,B84,B85,B87,B89,B99,C11,C12,C14,C16,C17,C30,C35,C36,C39,C4,C40,C43,C44,C45,C46,C47,C49,C54,C61,C63,C69,C74,C76,C77,C8,C81,C84,D10,D6,D8,D9
lof_cds	Chr5	1850426	G	GAA	INDEL	2bp_insertion	frameshift_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	91	A1,A14,A15,A16,A18,A2,A23,B101,B102,B104,B105,B113,B114,B12,B120,B121,B122,B128,B129,B132,B135,B138,B15,B16,B18,B21,B22,B23,B25,B30,B39,B4,B49,B52,B54,B60,B63,B64,B68,B70,B71,B72,B75,B78,B81,B82,B84,B85,B87,B89,B99,C11,C12,C14,C15,C16,C17,C21,C30,C35,C36,C39,C4,C40,C43,C45,C46,C47,C49,C54,C55,C6,C60,C61,C63,C69,C74,C76,C79,C8,C81,C84,C86,C87,D1,D10,D3,D5,D6,D8,D9
typical_cds_rare	Chr5	1850443	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	4	B129,B72,B95,C40
lof_cds	Chr5	1850450	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	1	B13
typical_cds_rare	Chr5	1850450	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	1	B13
typical_cds_rare	Chr5	1850460	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	3	A8,B60,D6
lof_cds	Chr5	1850493	T	TCA	INDEL	2bp_insertion	frameshift_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	3	C14,C42,C51
typical_cds_rare	Chr5	1850493	T	TCA	INDEL	2bp_insertion	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	3	C14,C42,C51
typical_cds_rare	Chr5	1850502	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	4	C14,C42,C51,D6
lof_cds	Chr5	1850505	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	1	C39
typical_cds_rare	Chr5	1850505	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	1	C39
typical_cds_rare	Chr5	1850514	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	1	A21
typical_cds_rare	Chr5	1850515	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	5	B136,B44,B52,C18,D10
typical_cds_rare	Chr5	1850556	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	4	B15,B17,C11,D8
typical_cds_rare	Chr5	1850576	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	4	B10,B87,C28,C75
lof_cds	Chr5	1850590	A	ACG	INDEL	2bp_insertion	frameshift_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	4	A1,B70,B79,C48
typical_cds_rare	Chr5	1850590	A	ACG	INDEL	2bp_insertion	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	4	A1,B70,B79,C48
typical_cds_rare	Chr5	1850622	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	3	B6,B86,C23
lof_cds	Chr5	1850639	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	6	A2,B104,B4,C53,C76,D4
typical_cds_rare	Chr5	1850650	TGG	*	INDEL	2bp_deletion	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	5	A2,B104,B4,C71,C76
lof_cds	Chr5	1850654	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	2	B139,B140
typical_cds_rare	Chr5	1850654	AG	A	INDEL	1bp_deletion	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	2	B139,B140
typical_cds_rare	Chr5	1850670	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	4	A2,B104,B4,C76
typical_cds_rare	Chr5	1850685	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	3	B118,B4,C76
lof_cds	Chr5	1850691	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	8	A21,A6,B128,B140,B18,B38,B55,C61
lof_cds	Chr5	1850710	G	GAC	INDEL	2bp_insertion	frameshift_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	85	A10,A11,A16,A19,A2,A20,A21,A24,A25,A4,A5,A6,B105,B109,B113,B13,B132,B134,B135,B136,B137,B140,B2,B21,B28,B33,B34,B36,B37,B40,B41,B44,B45,B47,B48,B5,B53,B58,B59,B67,B72,B73,B75,B76,B77,B79,B82,B83,B86,B89,B9,B90,B95,C22,C23,C24,C25,C27,C3,C30,C31,C33,C35,C38,C39,C42,C43,C44,C45,C49,C51,C54,C55,C57,C64,C65,C7,C71,C72,C73,C77,C8,C86,D10,D4
lof_cds	Chr5	1850721	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	88	A10,A11,A16,A19,A2,A20,A21,A24,A25,A4,A5,A6,B105,B109,B113,B12,B13,B132,B134,B135,B136,B137,B139,B140,B2,B21,B28,B33,B34,B36,B37,B40,B41,B44,B45,B47,B48,B5,B53,B58,B59,B67,B72,B73,B76,B77,B79,B82,B83,B86,B89,B9,B90,B92,B95,C22,C23,C24,C25,C27,C3,C30,C31,C33,C35,C38,C39,C42,C43,C44,C45,C49,C51,C54,C55,C57,C63,C64,C65,C7,C71,C72,C73,C77,C8,C86,D10,D4
lof_cds	Chr5	1850723	ATT	A	INDEL	2bp_deletion	frameshift_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	3	A7,B22,C60
typical_cds_rare	Chr5	1850723	ATT	A	INDEL	2bp_deletion	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	3	A7,B22,C60
typical_cds_rare	Chr5	1850787	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	3	A7,B22,B55
typical_cds_rare	Chr5	1850814	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	2	B41,C86
typical_cds_rare	Chr5	1850838	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	1	B13
typical_cds_rare	Chr5	1850901	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	1	C29
typical_cds_rare	Chr5	1850924	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	1	C29
typical_cds_rare	Chr5	1850951	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	1	B24
typical_cds_rare	Chr5	1851128	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	3	B66,B78,C46
lof_cds	Chr5	1851664	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	9	A1,A11,A21,B100,B105,B57,B84,C56,C59
lof_cds	Chr5	1851666	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	4	A3,B105,B111,B32
typical_cds_rare	Chr5	1851666	GA	G	INDEL	1bp_deletion	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	4	A3,B105,B111,B32
typical_cds_rare	Chr5	1851676	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	4	B16,C11,C20,C55
typical_cds_rare	Chr5	1851677	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	3	B22,B91,C74
typical_cds_rare	Chr5	1851678	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	3	B66,B78,C46
typical_cds_rare	Chr5	1851691	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	5	A3,B105,B111,B28,B32
typical_cds_rare	Chr5	1851700	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	4	A24,B44,B52,C18
lof_cds	Chr5	1851742	TCA	T	INDEL	2bp_deletion	frameshift_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	52	A10,A11,A13,A15,A21,A22,A3,A9,B100,B105,B111,B124,B128,B13,B139,B19,B22,B24,B32,B33,B36,B5,B57,B65,B67,B70,B74,B81,B84,B93,C18,C20,C22,C24,C34,C36,C4,C46,C48,C50,C56,C57,C59,C65,C72,C74,C77,C84,D11,D3,D7,D8
lof_cds	Chr5	1851745	T	TTG	INDEL	2bp_insertion	frameshift_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	64	A1,A10,A11,A13,A15,A21,A22,A3,A8,A9,B10,B100,B105,B110,B111,B123,B124,B128,B13,B139,B17,B19,B22,B24,B26,B32,B33,B36,B49,B5,B57,B65,B67,B70,B74,B81,B84,B93,B99,C18,C20,C22,C24,C34,C36,C4,C46,C48,C5,C50,C56,C57,C59,C62,C65,C72,C74,C77,C83,C84,D11,D3,D7,D8
typical_cds_rare	Chr5	1851764	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	1	B85
typical_cds_rare	Chr5	1851810	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	1	B112
typical_cds_rare	Chr5	1851837	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	3	B134,C2,C55
lof_cds	Chr5	1851866	GGA	G	INDEL	2bp_deletion	frameshift_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	11	A1,A21,A3,B111,B32,B84,B93,C18,C24,C72,C74
lof_cds	Chr5	1851869	A	AGT	INDEL	2bp_insertion	frameshift_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	11	A1,A21,A3,B111,B32,B84,B93,C18,C24,C72,C74
typical_cds_rare	Chr5	1851882	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	3	B19,B32,C1
typical_cds_rare	Chr5	1851884	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	5	A9,B129,B27,C11,D8
typical_cds_rare	Chr5	1851915	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	1	C1
typical_cds_rare	Chr5	1851923	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	4	A3,B105,C16,C30
typical_cds_rare	Chr5	1851935	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	5	A18,B36,B78,C2,C29
lof_cds	Chr5	1851965	GGC	G	INDEL	2bp_deletion	frameshift_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	2	B33,C8
typical_cds_rare	Chr5	1851965	GGC	G	INDEL	2bp_deletion	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	2	B33,C8
lof_cds	Chr5	1851972	C	CAT	INDEL	2bp_insertion	frameshift_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	2	B33,C8
typical_cds_rare	Chr5	1851972	C	CAT	INDEL	2bp_insertion	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	2	B33,C8
typical_cds_rare	Chr5	1852001	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	2	A13,C16
typical_cds_rare	Chr5	1852056	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	3	B38,B39,C13
typical_cds_rare	Chr5	1852073	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	1	B86
typical_cds_rare	Chr5	1852117	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	1	C74
typical_cds_rare	Chr5	1852124	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131024758	SmilChr05G000242	131024758	rna-XM_057954297.1	4	B134,C2,C55,D11