source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr5	3137535	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	3	B124,C23,C81
typical_cds_rare	Chr5	3137577	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	1	B109
lof_cds	Chr5	3137585	C	CAA	INDEL	2bp_insertion	frameshift_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	17	B1,B127,B130,B22,B36,B65,B71,C1,C34,C44,C5,C57,C64,C66,C72,C77,C8
lof_cds	Chr5	3137613	A	AC	INDEL	1bp_insertion	frameshift_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	7	A2,B100,B125,B26,B90,B92,C83
typical_cds_rare	Chr5	3137621	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	4	B13,B31,B97,C60
lof_cds	Chr5	3137647	TTC	T	INDEL	2bp_deletion	frameshift_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	18	B10,B110,B125,B128,B129,B132,B17,B22,B28,B34,B82,B83,B86,B91,C21,C36,C55,D9
lof_cds	Chr5	3137652	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	23	B10,B110,B125,B128,B129,B130,B132,B17,B22,B28,B34,B36,B71,B82,B83,B86,B91,C21,C34,C36,C44,C55,D9
typical_cds_rare	Chr5	3137654	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	5	B130,B36,B71,C34,C44
lof_cds	Chr5	3138316	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	17	A14,A20,A22,B101,B18,B22,B48,B6,B7,B73,B80,B9,C1,C42,C45,C59,C67
lof_cds	Chr5	3138340	CG	C	INDEL	1bp_deletion	frameshift_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	44	A11,A2,A23,A3,B10,B100,B125,B129,B132,B133,B134,B14,B17,B19,B2,B20,B26,B28,B29,B30,B33,B34,B4,B44,B46,B49,B7,B70,B78,B85,B87,C16,C18,C25,C30,C43,C59,C61,C71,C79,C82,C85,D1,D10
lof_cds	Chr5	3138342	TCG	T	INDEL	2bp_deletion	frameshift_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	40	A11,A2,A23,A3,B10,B100,B125,B129,B132,B133,B134,B14,B17,B19,B2,B20,B26,B28,B29,B30,B33,B34,B4,B44,B49,B7,B70,B78,B85,C16,C18,C25,C30,C43,C59,C61,C79,C82,C85,D10
lof_cds	Chr5	3138343	CG	C	INDEL	1bp_deletion	frameshift_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	40	A13,A24,A3,A4,A6,A9,B115,B119,B132,B16,B26,B36,B41,B44,B47,B48,B5,B69,B74,B88,B90,C11,C17,C2,C27,C32,C37,C45,C46,C48,C49,C52,C65,C68,C75,C79,D10,D3,D7,D9
lof_cds	Chr5	3138346	CTT	C	INDEL	2bp_deletion	frameshift_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	1	B48
typical_cds_rare	Chr5	3138346	CTT	C	INDEL	2bp_deletion	CDS_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	1	B48
lof_cds	Chr5	3138366	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	4	A7,B27,B40,C42
typical_cds_rare	Chr5	3138366	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	4	A7,B27,B40,C42
lof_cds	Chr5	3138368	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	3	B60,C13,C42
typical_cds_rare	Chr5	3138368	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	3	B60,C13,C42
typical_cds_rare	Chr5	3138375	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	1	D8
lof_cds	Chr5	3138376	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	2	B27,B40
typical_cds_rare	Chr5	3138376	T	TC	INDEL	1bp_insertion	CDS_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	2	B27,B40
lof_cds	Chr5	3138378	A	ATC	INDEL	2bp_insertion	frameshift_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	4	B129,C13,C26,C38
typical_cds_rare	Chr5	3138378	A	ATC	INDEL	2bp_insertion	CDS_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	4	B129,C13,C26,C38
typical_cds_rare	Chr5	3138389	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	2	B126,C86
lof_cds	Chr5	3138500	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	110	A10,A14,A19,A2,A25,A5,A6,A7,A8,A9,B102,B103,B105,B106,B109,B111,B112,B114,B122,B123,B127,B128,B13,B131,B134,B136,B138,B139,B14,B140,B15,B19,B20,B28,B3,B31,B32,B33,B34,B45,B49,B50,B51,B52,B53,B54,B55,B56,B57,B59,B6,B60,B62,B64,B65,B68,B7,B72,B73,B74,B75,B78,B8,B80,B81,B83,B9,B99,C10,C11,C17,C2,C20,C22,C23,C26,C27,C28,C29,C30,C31,C33,C35,C36,C37,C39,C4,C40,C42,C47,C51,C53,C55,C61,C65,C66,C69,C7,C72,C78,C79,C82,C9,D1,D11,D2,D3,D6,D8,D9
lof_cds	Chr5	3138519	GAA	G	INDEL	2bp_deletion	frameshift_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	183	A1,A10,A11,A13,A15,A16,A18,A19,A20,A21,A23,A24,A3,A4,A5,A6,A9,B1,B10,B100,B101,B102,B104,B106,B107,B108,B11,B110,B113,B115,B117,B118,B119,B12,B120,B123,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B134,B135,B137,B138,B14,B15,B16,B17,B18,B2,B20,B21,B22,B23,B24,B26,B27,B29,B30,B31,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B46,B47,B48,B49,B5,B51,B52,B55,B58,B6,B65,B66,B69,B70,B71,B74,B76,B78,B79,B80,B81,B82,B84,B87,B88,B89,B90,B91,B92,B93,B95,B97,B98,C1,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C24,C25,C3,C32,C34,C36,C37,C38,C4,C40,C41,C43,C44,C45,C46,C48,C49,C5,C50,C52,C54,C56,C57,C58,C6,C60,C61,C62,C64,C65,C66,C68,C69,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C80,C81,C83,C84,C85,C86,C87,D1,D10,D2,D4,D5,D6,D7,D9
lof_cds	Chr5	3138577	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	47	A10,A16,A18,A7,B102,B107,B108,B123,B128,B129,B13,B131,B134,B137,B15,B17,B2,B24,B30,B37,B4,B49,B6,B78,B80,B81,B84,B87,B93,B98,C12,C19,C25,C28,C30,C34,C4,C45,C49,C5,C56,C60,C73,C85,D1,D5,D9
lof_cds	Chr5	3138579	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	46	A10,A16,A18,A7,B102,B107,B108,B123,B128,B13,B131,B134,B137,B15,B17,B2,B24,B30,B37,B4,B49,B6,B78,B80,B81,B84,B87,B93,B98,C12,C19,C25,C28,C30,C34,C4,C45,C49,C5,C56,C60,C73,C85,D1,D5,D9
lof_cds	Chr5	3138601	GCC	G	INDEL	2bp_deletion	frameshift_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	2	B108,C5
typical_cds_rare	Chr5	3138601	GCC	G	INDEL	2bp_deletion	CDS_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	2	B108,C5
lof_cds	Chr5	3138620	T	TGG	INDEL	2bp_insertion	frameshift_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	194	A1,A11,A13,A14,A16,A18,A2,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A7,A9,B1,B100,B101,B102,B103,B104,B106,B108,B11,B111,B112,B113,B114,B117,B12,B120,B121,B123,B124,B125,B126,B127,B130,B131,B132,B134,B135,B136,B137,B14,B15,B16,B18,B19,B20,B22,B23,B26,B27,B28,B29,B3,B30,B31,B32,B33,B35,B36,B37,B4,B40,B41,B42,B44,B45,B47,B48,B49,B5,B50,B51,B53,B54,B55,B56,B57,B58,B59,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B74,B75,B78,B79,B8,B81,B82,B83,B86,B88,B89,B90,B91,B92,B93,B94,B95,B96,B98,B99,C1,C10,C11,C14,C15,C16,C19,C2,C20,C21,C22,C24,C25,C26,C29,C3,C32,C34,C35,C36,C38,C39,C4,C40,C41,C42,C43,C44,C46,C47,C48,C49,C5,C50,C51,C53,C54,C55,C56,C57,C58,C59,C6,C61,C62,C63,C64,C65,C66,C68,C69,C7,C70,C72,C74,C75,C76,C77,C78,C8,C80,C81,C82,C84,C86,C87,C9,D11,D2,D4,D5,D7,D9
lof_cds	Chr5	3138654	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	1	D1
typical_cds_rare	Chr5	3138654	A	AG	INDEL	1bp_insertion	CDS_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	1	D1
lof_cds	Chr5	3138661	G	GTA	INDEL	2bp_insertion	frameshift_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	1	D1
typical_cds_rare	Chr5	3138661	G	GTA	INDEL	2bp_insertion	CDS_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	1	D1
lof_cds	Chr5	3138706	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	10	A3,A6,B104,B137,B17,B2,B71,C16,C65,C79
typical_cds_rare	Chr5	3138783	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	4	B38,B39,B78,C13
lof_cds	Chr5	3138843	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	226	A1,A10,A14,A15,A16,A19,A2,A20,A21,A22,A23,A25,A3,A4,A5,A6,A8,A9,B1,B100,B101,B103,B105,B106,B108,B109,B11,B110,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B13,B130,B131,B132,B133,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B26,B27,B28,B29,B3,B31,B32,B33,B34,B35,B36,B37,B38,B39,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B6,B60,B62,B63,B64,B65,B66,B67,B68,B69,B71,B72,B73,B74,B75,B77,B79,B8,B80,B81,B82,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B94,B96,B97,B98,B99,C10,C11,C13,C14,C15,C16,C17,C18,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C46,C47,C49,C5,C50,C51,C52,C53,C54,C55,C57,C58,C59,C6,C60,C61,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D11,D2,D3,D5,D6,D7,D8,D9
lof_cds	Chr5	3138889	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	25	A15,A2,A24,A3,B10,B100,B125,B133,B17,B20,B23,B26,B44,B7,B70,B87,B97,B98,C16,C2,C40,C43,C61,C82,D4
lof_cds	Chr5	3138891	GAC	G	INDEL	2bp_deletion	frameshift_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	4	B118,B120,B59,B64
typical_cds_rare	Chr5	3138891	GAC	G	INDEL	2bp_deletion	CDS_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	4	B118,B120,B59,B64
typical_cds_rare	Chr5	3138980	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	2	A11,B83
lof_cds	Chr5	3138999	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	2	B68,C45
typical_cds_rare	Chr5	3138999	T	TC	INDEL	1bp_insertion	CDS_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	2	B68,C45
lof_cds	Chr5	3139002	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	72	A1,A11,A13,A16,A19,A20,A21,A6,A7,B1,B101,B108,B110,B118,B120,B121,B123,B128,B129,B130,B135,B138,B15,B16,B22,B24,B27,B28,B35,B36,B37,B40,B42,B43,B45,B46,B47,B48,B51,B58,B59,B64,B71,B77,B81,B85,B91,B94,C1,C11,C13,C14,C23,C32,C38,C41,C42,C44,C49,C5,C59,C6,C66,C68,C74,C75,C76,C77,C8,C81,D10,D4
typical_cds_rare	Chr5	3139010	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	1	B113
lof_cds	Chr5	3139014	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	2	B13,C60
typical_cds_rare	Chr5	3139014	T	TA	INDEL	1bp_insertion	CDS_variant	LOC130985133	SmilChr05G000415	130985133	rna-XM_057907936.1	2	B13,C60