source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr5	4333695	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130985233	SmilChr05G000576	130985233	rna-XM_057908074.1,rna-XM_057908076.1	1	B140
typical_cds_rare	Chr5	4333707	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130985233	SmilChr05G000576	130985233	rna-XM_057908074.1,rna-XM_057908076.1	4	A15,B114,B122,D11
typical_cds_rare	Chr5	4333866	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130985233	SmilChr05G000576	130985233	rna-XM_057908074.1,rna-XM_057908076.1	3	B7,B79,C27
typical_cds_rare	Chr5	4333917	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130985233	SmilChr05G000576	130985233	rna-XM_057908074.1,rna-XM_057908076.1	2	A7,C44
typical_cds_rare	Chr5	4334363	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130985233	SmilChr05G000576	130985233	rna-XM_057908074.1,rna-XM_057908076.1	2	B14,B55
lof_cds	Chr5	4334377	CCT	C	INDEL	2bp_deletion	frameshift_variant	LOC130985233	SmilChr05G000576	130985233	rna-XM_057908074.1,rna-XM_057908076.1	4	B14,B55,C40,D2
typical_cds_rare	Chr5	4334377	CCT	C	INDEL	2bp_deletion	CDS_variant	LOC130985233	SmilChr05G000576	130985233	rna-XM_057908074.1,rna-XM_057908076.1	4	B14,B55,C40,D2
lof_cds	Chr5	4334381	C	CTA	INDEL	2bp_insertion	frameshift_variant	LOC130985233	SmilChr05G000576	130985233	rna-XM_057908074.1,rna-XM_057908076.1	5	B14,B55,C40,D2,D9
typical_cds_rare	Chr5	4334381	C	CTA	INDEL	2bp_insertion	CDS_variant	LOC130985233	SmilChr05G000576	130985233	rna-XM_057908074.1,rna-XM_057908076.1	5	B14,B55,C40,D2,D9
lof_cds	Chr5	4334389	G	GT	INDEL	1bp_insertion	frameshift_variant	LOC130985233	SmilChr05G000576	130985233	rna-XM_057908074.1,rna-XM_057908076.1	5	B14,B55,C40,D2,D9
typical_cds_rare	Chr5	4334389	G	GT	INDEL	1bp_insertion	CDS_variant	LOC130985233	SmilChr05G000576	130985233	rna-XM_057908074.1,rna-XM_057908076.1	5	B14,B55,C40,D2,D9
lof_cds	Chr5	4334392	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC130985233	SmilChr05G000576	130985233	rna-XM_057908074.1,rna-XM_057908076.1	5	B14,B55,C40,D2,D9
typical_cds_rare	Chr5	4334392	TC	T	INDEL	1bp_deletion	CDS_variant	LOC130985233	SmilChr05G000576	130985233	rna-XM_057908074.1,rna-XM_057908076.1	5	B14,B55,C40,D2,D9
lof_cds	Chr5	4334551	A	ACC	INDEL	2bp_insertion	frameshift_variant	LOC130985233	SmilChr05G000576	130985233	rna-XM_057908074.1,rna-XM_057908076.1	32	A15,A23,A9,B110,B111,B112,B122,B140,B19,B2,B27,B31,B32,B34,B46,B51,B63,B69,B79,B82,B86,B95,C26,C30,C34,C62,C7,C74,C75,C80,D2,D6
lof_cds	Chr5	4334553	CGG	C	INDEL	2bp_deletion	frameshift_variant	LOC130985233	SmilChr05G000576	130985233	rna-XM_057908074.1,rna-XM_057908076.1	31	A15,A23,A9,B110,B112,B140,B19,B2,B21,B27,B31,B32,B34,B46,B51,B54,B63,B69,B79,B82,B86,B95,C26,C30,C34,C62,C7,C75,C80,D2,D6
typical_cds_rare	Chr5	4334725	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130985233	SmilChr05G000576	130985233	rna-XM_057908074.1,rna-XM_057908076.1	1	B30
lof_cds	Chr5	4334730	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC130985233	SmilChr05G000576	130985233	rna-XM_057908074.1,rna-XM_057908076.1	55	A10,A20,A25,B10,B100,B103,B105,B109,B125,B126,B129,B130,B138,B21,B22,B26,B29,B33,B4,B40,B42,B43,B44,B45,B57,B58,B61,B63,B65,B67,B7,B70,B71,B80,B83,B91,B98,C12,C19,C23,C35,C36,C44,C5,C65,C66,C67,C73,C76,C77,C82,C84,C87,D1,D10
typical_cds_rare	Chr5	4334764	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130985233	SmilChr05G000576	130985233	rna-XM_057908074.1,rna-XM_057908076.1	1	B97
typical_cds_rare	Chr5	4334781	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130985233	SmilChr05G000576	130985233	rna-XM_057908074.1,rna-XM_057908076.1	5	B124,B135,B138,C66,C87
typical_cds_rare	Chr5	4334997	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130985233	SmilChr05G000576	130985233	rna-XM_057908074.1,rna-XM_057908076.1	4	B126,B134,B76,D7
typical_cds_rare	Chr5	4335544	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130985233	SmilChr05G000576	130985233	rna-XM_057908074.1,rna-XM_057908076.1	1	C80
typical_cds_rare	Chr5	4335547	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130985233	SmilChr05G000576	130985233	rna-XM_057908074.1,rna-XM_057908076.1	3	B7,B79,C27
typical_cds_rare	Chr5	4335757	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130985233	SmilChr05G000576	130985233	rna-XM_057908074.1,rna-XM_057908076.1	1	C51
lof_cds	Chr5	4339148	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC130985233	SmilChr05G000576	130985233	rna-XM_057908074.1,rna-XM_057908076.1	2	B42,B43
typical_cds_rare	Chr5	4339148	TC	T	INDEL	1bp_deletion	CDS_variant	LOC130985233	SmilChr05G000576	130985233	rna-XM_057908074.1,rna-XM_057908076.1	2	B42,B43
lof_cds	Chr5	4339166	G	GC	INDEL	1bp_insertion	frameshift_variant	LOC130985233	SmilChr05G000576	130985233	rna-XM_057908074.1,rna-XM_057908076.1	226	A1,A10,A11,A13,A14,A15,A18,A19,A2,A20,A21,A22,A23,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B117,B118,B119,B12,B120,B121,B122,B125,B126,B128,B129,B13,B131,B133,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B20,B21,B22,B23,B24,B25,B26,B28,B29,B3,B30,B31,B32,B33,B34,B35,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B51,B54,B55,B56,B57,B58,B59,B6,B60,B61,B64,B65,B66,B67,B68,B69,B7,B70,B72,B73,B74,B75,B77,B78,B79,B80,B82,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C49,C5,C51,C52,C53,C54,C55,C56,C57,C58,C59,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C71,C73,C74,C75,C76,C78,C8,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D3,D4,D5,D6,D7,D9
lof_cds	Chr5	4339170	CCT	C	INDEL	2bp_deletion	frameshift_variant	LOC130985233	SmilChr05G000576	130985233	rna-XM_057908074.1,rna-XM_057908076.1	226	A1,A10,A11,A13,A14,A15,A18,A19,A2,A20,A21,A22,A23,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B117,B118,B119,B12,B120,B121,B122,B125,B126,B128,B129,B13,B131,B133,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B20,B21,B22,B23,B24,B25,B26,B28,B29,B3,B30,B31,B32,B33,B34,B35,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B51,B54,B55,B56,B58,B59,B6,B60,B61,B64,B65,B66,B67,B68,B69,B7,B70,B72,B73,B74,B75,B77,B78,B79,B80,B82,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C49,C5,C51,C52,C53,C54,C55,C56,C57,C58,C59,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C71,C73,C74,C75,C76,C78,C8,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D9
lof_cds	Chr5	4339174	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC130985233	SmilChr05G000576	130985233	rna-XM_057908074.1,rna-XM_057908076.1	212	A1,A10,A11,A13,A14,A15,A18,A19,A2,A20,A21,A22,A23,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B109,B11,B110,B111,B112,B113,B114,B117,B118,B119,B12,B120,B121,B122,B125,B126,B128,B129,B13,B131,B133,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B20,B21,B22,B23,B24,B26,B28,B29,B3,B30,B31,B32,B33,B34,B35,B37,B38,B39,B4,B40,B41,B42,B44,B45,B46,B47,B48,B49,B5,B50,B51,B54,B55,B57,B58,B6,B60,B61,B65,B66,B68,B69,B7,B70,B73,B74,B75,B77,B78,B79,B80,B82,B83,B84,B85,B87,B88,B89,B90,B91,B93,B94,B95,B97,B98,B99,C1,C10,C13,C14,C15,C16,C17,C18,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C32,C33,C34,C35,C36,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C49,C5,C51,C52,C53,C54,C56,C57,C58,C59,C60,C61,C62,C63,C64,C65,C66,C68,C69,C7,C71,C73,C74,C75,C76,C78,C79,C8,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D9
lof_cds	Chr5	4339201	C	CCT	INDEL	2bp_insertion	frameshift_variant	LOC130985233	SmilChr05G000576	130985233	rna-XM_057908074.1,rna-XM_057908076.1	223	A1,A10,A11,A13,A14,A15,A18,A19,A2,A20,A21,A22,A23,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B109,B11,B110,B111,B112,B113,B114,B117,B118,B119,B12,B120,B121,B122,B123,B125,B126,B128,B129,B13,B131,B133,B134,B135,B136,B138,B139,B14,B140,B15,B16,B17,B18,B19,B20,B21,B22,B23,B24,B25,B26,B28,B29,B3,B30,B31,B32,B33,B34,B35,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B51,B54,B55,B56,B57,B58,B59,B6,B60,B61,B65,B66,B67,B68,B69,B7,B70,B72,B73,B74,B75,B77,B78,B79,B80,B82,B83,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C13,C14,C15,C16,C17,C18,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C32,C33,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C49,C5,C51,C52,C53,C54,C55,C56,C57,C58,C59,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C71,C72,C73,C74,C75,C76,C78,C8,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D9
lof_cds	Chr5	4339205	GTT	G	INDEL	2bp_deletion	frameshift_variant	LOC130985233	SmilChr05G000576	130985233	rna-XM_057908074.1,rna-XM_057908076.1	221	A1,A10,A11,A13,A14,A15,A18,A19,A2,A20,A21,A22,A23,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B109,B11,B110,B111,B112,B113,B114,B117,B118,B119,B12,B120,B121,B122,B123,B125,B126,B128,B129,B13,B131,B133,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B20,B21,B22,B23,B24,B25,B26,B28,B29,B3,B30,B31,B32,B33,B34,B35,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B51,B54,B55,B56,B57,B58,B59,B6,B60,B61,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B74,B75,B77,B78,B79,B80,B82,B83,B85,B87,B88,B89,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C13,C14,C15,C16,C17,C18,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C32,C33,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C49,C5,C51,C52,C54,C55,C56,C57,C58,C59,C60,C61,C62,C63,C64,C65,C66,C67,C68,C7,C71,C72,C73,C74,C75,C76,C78,C8,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D9
lof_cds	Chr5	4339255	C	CCA	INDEL	2bp_insertion	frameshift_variant	LOC130985233	SmilChr05G000576	130985233	rna-XM_057908074.1,rna-XM_057908076.1	165	A1,A11,A13,A14,A18,A19,A2,A21,A22,A23,A25,A3,A4,A5,A6,A8,B1,B10,B101,B102,B105,B106,B107,B11,B110,B111,B112,B113,B114,B118,B119,B12,B121,B122,B123,B125,B126,B128,B13,B131,B132,B133,B134,B136,B137,B138,B139,B14,B140,B16,B18,B21,B22,B23,B25,B26,B28,B3,B30,B31,B32,B33,B35,B37,B39,B40,B41,B45,B47,B48,B49,B5,B50,B53,B54,B56,B57,B58,B60,B61,B62,B65,B66,B68,B69,B7,B71,B72,B73,B74,B75,B78,B79,B80,B82,B83,B85,B87,B88,B89,B90,B91,B92,B94,B96,B99,C13,C15,C16,C17,C18,C21,C22,C23,C24,C26,C28,C3,C30,C32,C35,C36,C37,C38,C4,C40,C41,C42,C43,C44,C45,C46,C49,C50,C51,C55,C58,C59,C61,C62,C63,C64,C65,C66,C67,C68,C7,C73,C74,C75,C76,C8,C82,C84,C85,C86,C87,C9,D2,D3,D4,D5,D6,D8,D9
lof_cds	Chr5	4339262	ATG	A	INDEL	2bp_deletion	frameshift_variant	LOC130985233	SmilChr05G000576	130985233	rna-XM_057908074.1,rna-XM_057908076.1	137	A1,A11,A13,A14,A19,A2,A21,A23,A24,A25,A3,A4,A6,B10,B102,B105,B106,B107,B11,B110,B111,B112,B113,B114,B118,B119,B12,B121,B122,B123,B125,B13,B131,B133,B134,B136,B137,B138,B139,B14,B140,B16,B18,B21,B22,B23,B25,B26,B28,B3,B30,B32,B35,B39,B4,B40,B45,B47,B48,B49,B5,B50,B56,B57,B58,B60,B62,B65,B66,B68,B69,B7,B72,B73,B74,B75,B79,B82,B83,B85,B87,B88,B89,B90,B92,B94,B99,C13,C15,C16,C21,C22,C23,C24,C28,C3,C32,C35,C36,C37,C38,C4,C40,C41,C42,C43,C44,C45,C46,C49,C50,C51,C55,C58,C59,C61,C62,C63,C64,C66,C67,C68,C73,C74,C75,C76,C8,C82,C85,C86,C87,C9,D3,D4,D5,D8,D9
lof_cds	Chr5	4339326	A	ACT	INDEL	2bp_insertion	frameshift_variant	LOC130985233	SmilChr05G000576	130985233	rna-XM_057908074.1,rna-XM_057908076.1	7	B119,B13,B139,B16,B26,B47,B83
lof_cds	Chr5	4339778	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC130985233	SmilChr05G000576	130985233	rna-XM_057908074.1,rna-XM_057908076.1	33	A19,B103,B104,B105,B115,B118,B120,B126,B130,B138,B139,B24,B42,B43,B52,B59,B7,B70,B71,B76,B85,B92,B97,B98,C11,C2,C48,C60,C69,C82,C87,D10,D11
lof_cds	Chr5	4339876	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC130985233	SmilChr05G000576	130985233	rna-XM_057908074.1	86	A13,A15,A19,A24,A5,A9,B102,B103,B104,B107,B108,B111,B115,B118,B120,B126,B128,B130,B131,B138,B139,B17,B19,B25,B27,B3,B36,B42,B43,B44,B47,B5,B52,B54,B55,B56,B58,B59,B61,B67,B7,B70,B71,B72,B8,B81,B85,B88,B9,B90,B92,B96,B97,B99,C1,C10,C11,C12,C17,C18,C2,C26,C27,C28,C30,C37,C40,C42,C49,C5,C53,C55,C60,C65,C67,C69,C71,C82,C83,C87,D10,D11,D2,D3,D5,D8
lof_cds	Chr5	4339976	T	TCA	INDEL	2bp_insertion	frameshift_variant	LOC130985233	SmilChr05G000576	130985233	rna-XM_057908074.1,rna-XM_057908076.1	50	A13,A24,A9,B102,B107,B108,B111,B128,B131,B138,B17,B19,B3,B36,B44,B47,B5,B54,B56,B58,B60,B72,B8,B9,B90,B92,B96,B99,C10,C11,C12,C18,C26,C27,C30,C37,C42,C49,C5,C53,C55,C65,C67,C69,C71,C83,C87,D2,D5,D8
lof_cds	Chr5	4339977	TGA	T	INDEL	2bp_deletion	frameshift_variant	LOC130985233	SmilChr05G000576	130985233	rna-XM_057908074.1,rna-XM_057908076.1	41	A13,A24,A9,B102,B107,B111,B128,B138,B17,B3,B36,B44,B47,B5,B54,B58,B60,B8,B90,B92,B96,B99,C10,C11,C12,C18,C26,C27,C30,C37,C42,C5,C53,C65,C67,C69,C71,C87,D2,D5,D8